mRNA_S-dermatodea_contig13328.1971.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13328.1971.1
Unique NamemRNA_S-dermatodea_contig13328.1971.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13328.1971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13328contigS-dermatodea_contig13328:2328..2909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size582
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924282.4660265-UTR-S-dermatodea_contig13328:2327..25731622924282.4660265-UTR-S-dermatodea_contig13328:2327..2573Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13328 2328..2573 +
1694079148.807765-UTR-S-dermatodea_contig13328:2327..25731694079148.807765-UTR-S-dermatodea_contig13328:2327..2573Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13328 2328..2573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924282.4743867-CDS-S-dermatodea_contig13328:2573..29091622924282.4743867-CDS-S-dermatodea_contig13328:2573..2909Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13328 2574..2909 +
1694079148.8154361-CDS-S-dermatodea_contig13328:2573..29091694079148.8154361-CDS-S-dermatodea_contig13328:2573..2909Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13328 2574..2909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13328.1971.1prot_S-dermatodea_contig13328.1971.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13328 2574..2909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13328.1971.1

>prot_S-dermatodea_contig13328.1971.1 ID=prot_S-dermatodea_contig13328.1971.1|Name=mRNA_S-dermatodea_contig13328.1971.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
MLHRRLDEPKPRGLEDSNRHAACRLRKAPSRPHAPTSASRQNKTLMGTDN
SKPGTKPTATDTPARLQQAEEERRASLGEPTTGQKNTPATYKGGTASQKQ
KTNEPANNSYSV
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mRNA from alignment at S-dermatodea_contig13328:2328..2909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13328.1971.1 ID=mRNA_S-dermatodea_contig13328.1971.1|Name=mRNA_S-dermatodea_contig13328.1971.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig13328:2328..2909+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCAACATTTTTTGGAGACAGAAGAAACGGCATTACCCCTGCCCGCCAG
ACGTAATTTCGCGCTATTAACTTTCGATAAACCGAGACCACGAGGCGTAT
TGACAAAATGCCTAAGAATGTCGACTGCGAAAAGAGCCCCCTCGACGCAA
CTGGGCGCTTTGAACAAACCCAACACCCACGACGCGTGATGACAGCAGCC
AATACGGCGCAGACTGTAGAGAACCCCCGACCTCGGCCTCGCGCAAATGC
TACACAGGCGTCTTGACGAACCAAAGCCACGAGGTTTAGAAGACAGCAAC
CGACACGCTGCCTGCCGGCTACGAAAAGCCCCCTCTAGACCTCATGCGCC
TACATCAGCGTCTCGACAAAACAAAACGCTGATGGGTACAGATAACAGCA
AGCCCGGCACCAAGCCTACCGCGACGGACACGCCGGCGCGATTACAACAG
GCCGAGGAGGAGAGGAGGGCCTCGCTCGGGGAACCCACCACCGGACAAAA
AAACACGCCGGCGACCTATAAGGGGGGCACCGCGTCGCAAAAACAGAAAA
CAAATGAGCCCGCAAATAATAGCTACAGTGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13328:2328..2909+

>mRNA_S-dermatodea_contig13328.1971.1 ID=mRNA_S-dermatodea_contig13328.1971.1|Name=mRNA_S-dermatodea_contig13328.1971.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig13328:2328..2909+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTACACAGGCGTCTTGACGAACCAAAGCCACGAGGTTTAGAAGACAG
CAACCGACACGCTGCCTGCCGGCTACGAAAAGCCCCCTCTAGACCTCATG
CGCCTACATCAGCGTCTCGACAAAACAAAACGCTGATGGGTACAGATAAC
AGCAAGCCCGGCACCAAGCCTACCGCGACGGACACGCCGGCGCGATTACA
ACAGGCCGAGGAGGAGAGGAGGGCCTCGCTCGGGGAACCCACCACCGGAC
AAAAAAACACGCCGGCGACCTATAAGGGGGGCACCGCGTCGCAAAAACAG
AAAACAAATGAGCCCGCAAATAATAGCTACAGTGTGATGCTACACAGGCG
TCTTGACGAACCAAAGCCACGAGGTTTAGAAGACAGCAACCGACACGCTG
CCTGCCGGCTACGAAAAGCCCCCTCTAGACCTCATGCGCCTACATCAGCG
TCTCGACAAAACAAAACGCTGATGGGTACAGATAACAGCAAGCCCGGCAC
CAAGCCTACCGCGACGGACACGCCGGCGCGATTACAACAGGCCGAGGAGG
AGAGGAGGGCCTCGCTCGGGGAACCCACCACCGGACAAAAAAACACGCCG
GCGACCTATAAGGGGGGCACCGCGTCGCAAAAACAGAAAACAAATGAGCC
CGCAAATAATAGCTACAGTGTG
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