mRNA_S-dermatodea_contig13308.1966.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13308.1966.1
Unique NamemRNA_S-dermatodea_contig13308.1966.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13308.1966.1 vs. uniprot
Match: A0A6H5KJW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.530e-10
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    4 RLSQSEEALRRCKHEEGRLRSRCLELENLLTETRGTLEEQSKVSGSLRREAARAHAEAEAARKQ 195
            RL QS++ LR C+ EE R R+RC +LE  L E R  LEEQ  V+ S+RR AARAH +AEAARKQ
Sbjct:   11 RLVQSQQELRCCRKEEERSRARCSQLETRLAEARDCLEEQKSVTSSMRRAAARAHEDAEAARKQ 74
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BLAST of mRNA_S-dermatodea_contig13308.1966.1 vs. uniprot
Match: D8LCW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW4_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 8.790e-10
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    4 RLSQSEEALRRCKHEEGRLRSRCLELENLLTETRGTLEEQSKVSGSLRREAARAHAEAEAARKQ 195
            RL QS+E LR C+ EE R R+RC +LE  L E R  LEEQ  V+ S+RR AARAH +AEAARKQ
Sbjct: 1075 RLVQSQEELRCCRKEEERSRARCSQLETRLAEARDCLEEQKSVTASMRRAAARAHDDAEAARKQ 1138
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13308.1966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJW4_9PHAE3.530e-1059.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCW4_ECTSI8.790e-1060.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13308contigS-dermatodea_contig13308:4826..6541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size196
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924282.2017195-CDS-S-dermatodea_contig13308:4825..49521622924282.2017195-CDS-S-dermatodea_contig13308:4825..4952Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13308 4826..4952 -
1694079148.621485-CDS-S-dermatodea_contig13308:4825..49521694079148.621485-CDS-S-dermatodea_contig13308:4825..4952Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13308 4826..4952 -
1622924282.2131045-CDS-S-dermatodea_contig13308:6473..65411622924282.2131045-CDS-S-dermatodea_contig13308:6473..6541Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13308 6474..6541 -
1694079148.6325788-CDS-S-dermatodea_contig13308:6473..65411694079148.6325788-CDS-S-dermatodea_contig13308:6473..6541Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13308 6474..6541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13308.1966.1prot_S-dermatodea_contig13308.1966.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13308 4826..6541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13308.1966.1

>prot_S-dermatodea_contig13308.1966.1 ID=prot_S-dermatodea_contig13308.1966.1|Name=mRNA_S-dermatodea_contig13308.1966.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=65bp
HRLSQSEEALRRCKHEEGRLRSRCLELENLLTETRGTLEEQSKVSGSLRR
EAARAHAEAEAARKQ
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mRNA from alignment at S-dermatodea_contig13308:4826..6541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13308.1966.1 ID=mRNA_S-dermatodea_contig13308.1966.1|Name=mRNA_S-dermatodea_contig13308.1966.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1716bp|location=Sequence derived from alignment at S-dermatodea_contig13308:4826..6541- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACCGTTTGTCCCAGAGCGAAGAGGCTCTCCGGCGCTGCAAGCACGAAGA
GGGGCGGTTGCGATCCAGGCACGTTCGCGACAACATTGCAATATTTAGGG
GAATCGTGTATTGCGATTATGAACGGCTTAGCTTCACCGCAACTGTAGCA
GAAGAAGCAGTACTAAGTGGCGACGACAGCATTGATTGGTTGTTATCTGC
CGCGGCACTGTTTGCTTGCGCTAATTGATCGGGCGGGTAAAGTTTGGATC
TCGTGGACAATGCGCATGCAGGAGCCCACTGAAACGTTAAAGCGGTTTCG
AAACACAGAGCGAGCGTTGGGGTCCCAGGTTTTTGAAGTCGAAGGAAGGA
AATAGCTCTATGGTCCTGGTTATAGCTATTACATATACCTATGGAGGCCT
ACGTTGCATGTGATGCTATCACACGGGTTTATGACATGTGTCATGAATTT
GGATCAACAATGCAAGACCCCCCCGACTCCCCCCCCCCTCCCACCTCCAC
CCCCACCCCCCGAAAAAAACTAAAACCGAGGTATACAGTAATCAAGTAAT
CAGGACCAATCTCACGACCATGAATACCCTAACAACAACAGAAGGGTCTC
GTGAAGAAAAAACAACACGATATGTTGTCATACGAAGTACCTGGTATACA
ACAACATCGACCATGAAATCTCGATAATTCCAGCCTATTTTTTCTTTTTT
AGGTTGAGACTTGTGGCAAATTGTAAATTTGGACCTGTCAACTATGGTCC
ACCGTAATATTTCAAAAAAATCAAGCGACCGTTGGGGTCCAACGGTTTTG
TAGGGGAGGAGATTATAGTAACGGTCATTACGGAGGTACACATTAATATT
AGTATAATAGTAGTGAGGAGAACATTTATGCTGGTGGCGCATTCAAATCT
TGTTTTCAACGTTGGCCCGACCGAACACCTTGCAATGTAATAGTTCATGG
TTTTTTATTGTCATTTTCAGCCCGGAAGAAGTGCAGATAGGTATTGTAAG
GCAACATATATATACCATATCCATCTATGGTTTGTTAAGTTGGGTATCAT
GAACGTTTTGTTTTATTTGGCCCTATTTGCGACTTTGTCCCGACGTGATA
AGTGACGACGGCAGCAATGTTTTCTGCTGCGGGCACTGTTTTACTCGCGC
TAATATCGGGCGTGCAGGATCTCATGGATAATCAGCAAGCAGGAACCCGG
CCTTTCGCTCGGTCCCGGCATTGTTGGGACGCGTGGCCTATGTCCGTACG
AATACGACATGCGTTTAACACAAGCAAATCCGAGAAGGCTGACCCCCCCC
CCCCCCCCGCGCTGCCGACTGACCCGAACGCTCAGTCCCGNNNNNNNNNN
AATAACCAAAGCGGAGACCCGCCTGTTCCGTCGCGCCCCGGTTTTTTGGG
GCGGGGGGCCTTTTTCCCCCCAAAACACCCATGGTTTTAAAAAAAACACC
CCCCCCCCCCCCCCCCCCCCTTTGTTCAATCCCACGCGCGCCTCATCACT
CACGCCATTTGCTTCTAGTTTTTTACGAAACCTCGCTGCAGTGAGTGACC
TCTAAACCCTGCCCCCTCTCTACCGACCCGCGCAAACAGGTGCCTCGAAC
TGGAAAACCTTCTGACGGAGACGCGCGGGACGCTGGAAGAGCAGAGCAAA
GTTTCCGGCTCTCTTAGGAGAGAGGCAGCCAGAGCGCACGCGGAGGCAGA
GGCGGCCAGGAAGCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13308:4826..6541-

>mRNA_S-dermatodea_contig13308.1966.1 ID=mRNA_S-dermatodea_contig13308.1966.1|Name=mRNA_S-dermatodea_contig13308.1966.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at S-dermatodea_contig13308:4826..6541- (Saccorhiza dermatodea SderLu1190fm monoicous)
CACCGTTTGTCCCAGAGCGAAGAGGCTCTCCGGCGCTGCAAGCACGAAGA
GGGGCGGTTGCGATCCAGCACCGTTTGTCCCAGAGCGAAGAGGCTCTCCG
GCGCTGCAAGCACGAAGAGGGGCGGTTGCGATCCAGGTGCCTCGAACTGG
AAAACCTTCTGACGGAGACGCGCGGGACGCTGGAAGAGCAGAGCAAAGTT
TCCGGCTCTCTTAGGAGAGAGGCAGCCAGAGCGCACGCGGAGGCAGAGGC
GGCCAGGAAGCAGGTGCCTCGAACTGGAAAACCTTCTGACGGAGACGCGC
GGGACGCTGGAAGAGCAGAGCAAAGTTTCCGGCTCTCTTAGGAGAGAGGC
AGCCAGAGCGCACGCGGAGGCAGAGGCGGCCAGGAAGCAG
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