mRNA_S-dermatodea_contig13305.1964.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13305.1964.1
Unique NamemRNA_S-dermatodea_contig13305.1964.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13305.1964.1 vs. uniprot
Match: D8LKQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ3_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 3.230e-44
Identity = 230/455 (50.55%), Postives = 251/455 (55.16%), Query Frame = 1 
Query:    7 GGRGSGTSTPMLAPSSSY-RGSPRGSTNGSVEDFGSGNDAAAPALGRASSSSAVSDASGVGSTIGGGGAAXSILXXXXXXXXXXXX----------------------ALDGSDVAVGKFAGNSGGGG----DGELPACLVGILDSFFGG------------RSRSGGE-----------------PPLRSPSTITGIDVEVGRAAFALLGVHDLDDIKHLSGAGIIAPESPERFCHLSDEVVAAAAAVLSSAVRGNAPADGFGLAATVATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSCAVIPVPIEGF-------SKEADGDAGT-ATVAAVADEMLRLDLDSLAVDCNAGQGQRNDGTRLLDVSAPDDGXXXXXXXXXXXXXXXAVGPSPLKTVRITGTAEEVQLAEYLIRVRTAGRDMAAA 1179
            GGRGSGTSTP+L+ S S  R SPRGS  GSVEDFG      APA              G     GGGG    +L     XXXXXXX                      AL    + +G  +GN  G G    DGELP+CLVGILDSF GG            RS SGG                  PPLRSPSTITGI++EVGR+AFA LG   LDDIK LSGAGI APESPE + HLSDE  AA  AV SSA RGNAP DG GLAA                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TS      P EGF          +DG A T   +AAV   + RL LD+     N+     N  +  L  +    G       XXXXXXXX  GP+ LKTV+ITGTAEEVQLAEYLIRV T G +MAAA
Sbjct:   12 GGRGSGTSTPLLSSSVSVSRDSPRGSA-GSVEDFG------APAT------------IGAADMNGGGGMDRPLLTRGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXAGALHRGGM-LGNMSGNGTGNGGVSDDGELPSCLVGILDSFLGGGGKSYVSDGNSIRSGSGGXXXXXXXXXXXXXXXXAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYYHLSDEAAAAMGAVYSSAARGNAPCDGVGLAAA----------------NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSS-----PFEGFRLREGVRGNMSDGAATTPGAIAAVTGGVSRLVLDTT----NSXXXXXNGVSPSLASAV---GHVSGGLAXXXXXXXXTAGPNSLKTVKITGTAEEVQLAEYLIRVSTTGGNMAAA 418
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BLAST of mRNA_S-dermatodea_contig13305.1964.1 vs. uniprot
Match: A0A6H5L8U0_9PHAE (KH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U0_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.250e-38
Identity = 233/459 (50.76%), Postives = 252/459 (54.90%), Query Frame = 1 
Query:    7 GGRGSGTSTPMLAPSSSY-RGSPRGSTNGSVEDFGSGNDAAAPALGRASSSSAVSDASGVGSTIGGGGAAXSILXXXXXXXXXXXXALDGSDVA---------------------VGKFAGNSGGGG----DGELPACLVGILDSFFGGRSRS-------------------------------GGEPPLRSPSTITGIDVEVGRAAFALLGVHDLDDIKHLSGAGIIAPESPERFCHLSDEVVAAAAAVLSSAVRGNAPADGFGLAATVATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSCAVIPVPIEGFS-KEA-----DGDAGTA--TVAAVADEMLRLDLDSLAVDCNAGQGQRNDGTRLLDVS---APDDGXXXXXXXXXXXXXXXAVGPSPLKTVRITGTAEEVQLAEYLIRVRTAGRDMAAA 1179
            GGR SGTSTP+L+ S S  + SPRGS  GSVEDFG+      PA              G     GGGG    +L    XXXXXXXX                             +G  +GN    G    DGELP+CLVGILDSF GG  +S                               G  PPLRSPSTITGI++EVGR+AFA LG   LDDIK LSGAGI APESPE +CHLSDE +AA  AV SSA RGNAP DG GLAA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             P EGF  KE       G A T    +AAV   + RL L         G            VS   A   G      XXXXXXXXX  GP+ LKTV+ITGTAEEVQLAEYLIRVRT G +MAAA
Sbjct:  407 GGRVSGTSTPLLSSSVSVSKDSPRGSA-GSVEDFGT------PAT------------IGAADMNGGGGMDRQLLTRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVLHRGGMLGNMSGNXXXXGGVSDDGELPSCLVGILDSFLGGGGKSYVSDGNGIRSGSGNXGSVGNSNANEKNGNNNGAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYCHLSDEALAAMGAVYSSAARGNAPCDGVGLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSS-----------PFEGFGLKEGVRGNMGGGAATTPGAIAAVTGGVSRLGL---------GTTMSXXXXXXXXVSPSLASAVGQVSGGLXXXXXXXXXTAGPNSLKTVKITGTAEEVQLAEYLIRVRTTGGNMAAA 826
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13305.1964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKQ3_ECTSI3.230e-4450.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8U0_9PHAE1.250e-3850.76KH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13305contigS-dermatodea_contig13305:3523..4704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004400.1
Exons1
Model size1182
Cds size1182
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.9973776-CDS-S-dermatodea_contig13305:3522..47041622924281.9973776-CDS-S-dermatodea_contig13305:3522..4704Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13305 3523..4704 +
1694079148.521855-CDS-S-dermatodea_contig13305:3522..47041694079148.521855-CDS-S-dermatodea_contig13305:3522..4704Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13305 3523..4704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13305.1964.1prot_S-dermatodea_contig13305.1964.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13305 3523..4704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13305.1964.1

>prot_S-dermatodea_contig13305.1964.1 ID=prot_S-dermatodea_contig13305.1964.1|Name=mRNA_S-dermatodea_contig13305.1964.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=394bp
TAGGRGSGTSTPMLAPSSSYRGSPRGSTNGSVEDFGSGNDAAAPALGRAS
SSSAVSDASGVGSTIGGGGAAVSILDAGGARSGGGGSALDGSDVAVGKFA
GNSGGGGDGELPACLVGILDSFFGGRSRSGGEPPLRSPSTITGIDVEVGR
AAFALLGVHDLDDIKHLSGAGIIAPESPERFCHLSDEVVAAAAAVLSSAV
RGNAPADGFGLAATVATAAAANQAISSSSSSSSSSSAAAAAATATAAAAA
AVTTSTAATTAAAAATTAAASASTSCAVIPVPIEGFSKEADGDAGTATVA
AVADEMLRLDLDSLAVDCNAGQGQRNDGTRLLDVSAPDDGGSGGAVGGGG
GGGGGAVGPSPLKTVRITGTAEEVQLAEYLIRVRTAGRDMAAA*
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mRNA from alignment at S-dermatodea_contig13305:3523..4704+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13305.1964.1 ID=mRNA_S-dermatodea_contig13305.1964.1|Name=mRNA_S-dermatodea_contig13305.1964.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1182bp|location=Sequence derived from alignment at S-dermatodea_contig13305:3523..4704+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGGCTGGTGGGAGGGGGAGCGGCACCAGCACCCCGATGCTGGCTCCGTC
CTCCTCCTACAGAGGCTCACCGCGCGGAAGCACCAACGGTTCCGTCGAGG
ACTTCGGATCCGGAAACGACGCCGCCGCCCCAGCGCTCGGCCGCGCGTCC
TCTTCGTCGGCCGTTTCGGATGCTTCCGGCGTTGGCTCCACCATCGGTGG
AGGTGGTGCGGCGGTTTCCATTCTCGACGCCGGCGGCGCCCGCAGCGGCG
GCGGTGGCAGCGCGCTCGACGGCAGCGATGTGGCGGTCGGAAAATTTGCT
GGCAACAGCGGAGGCGGCGGCGACGGGGAGCTTCCGGCGTGCCTCGTCGG
CATCCTCGACTCCTTCTTCGGGGGAAGATCCAGGAGCGGCGGCGAGCCGC
CCCTGCGAAGCCCCTCGACGATAACGGGGATCGACGTGGAGGTGGGGCGC
GCGGCCTTCGCCCTCCTCGGCGTGCACGACCTGGACGACATCAAGCACCT
CTCCGGTGCAGGGATCATCGCCCCGGAGTCGCCCGAGAGGTTCTGTCACC
TCTCGGACGAGGTCGTCGCCGCCGCCGCCGCAGTTCTTTCCTCCGCGGTC
CGCGGCAACGCTCCCGCGGACGGGTTCGGTCTCGCGGCAACGGTTGCCAC
GGCGGCCGCAGCAAACCAGGCGATCTCGTCTTCCTCCTCCTCCTCTTCCT
CCTCCTCCGCCGCCGCCGCCGCTGCCACTGCCACTGCTGCTGCTGCTGCT
GCCGTCACCACGTCCACCGCAGCCACCACCGCCGCCGCCGCTGCGACCAC
CGCCGCGGCTTCCGCTTCTACATCTTGCGCTGTCATCCCCGTCCCCATCG
AGGGTTTCAGCAAGGAGGCGGACGGCGATGCCGGGACCGCCACCGTTGCC
GCGGTGGCCGACGAAATGTTGCGCCTTGACCTGGACAGCCTCGCCGTCGA
TTGCAATGCCGGGCAGGGGCAGAGGAATGACGGCACGAGGCTCTTGGACG
TCTCCGCTCCTGACGACGGGGGGAGCGGTGGGGCGGTGGGCGGTGGCGGG
GGTGGTGGCGGCGGCGCCGTGGGTCCTAGCCCTCTGAAGACCGTTCGGAT
TACTGGGACAGCGGAAGAGGTACAGCTGGCCGAGTACCTCATTCGGGTCC
GGACCGCCGGCCGCGACATGGCGGCGGCTTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13305:3523..4704+

>mRNA_S-dermatodea_contig13305.1964.1 ID=mRNA_S-dermatodea_contig13305.1964.1|Name=mRNA_S-dermatodea_contig13305.1964.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2364bp|location=Sequence derived from alignment at S-dermatodea_contig13305:3523..4704+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGGCTGGTGGGAGGGGGAGCGGCACCAGCACCCCGATGCTGGCTCCGTC
CTCCTCCTACAGAGGCTCACCGCGCGGAAGCACCAACGGTTCCGTCGAGG
ACTTCGGATCCGGAAACGACGCCGCCGCCCCAGCGCTCGGCCGCGCGTCC
TCTTCGTCGGCCGTTTCGGATGCTTCCGGCGTTGGCTCCACCATCGGTGG
AGGTGGTGCGGCGGTTTCCATTCTCGACGCCGGCGGCGCCCGCAGCGGCG
GCGGTGGCAGCGCGCTCGACGGCAGCGATGTGGCGGTCGGAAAATTTGCT
GGCAACAGCGGAGGCGGCGGCGACGGGGAGCTTCCGGCGTGCCTCGTCGG
CATCCTCGACTCCTTCTTCGGGGGAAGATCCAGGAGCGGCGGCGAGCCGC
CCCTGCGAAGCCCCTCGACGATAACGGGGATCGACGTGGAGGTGGGGCGC
GCGGCCTTCGCCCTCCTCGGCGTGCACGACCTGGACGACATCAAGCACCT
CTCCGGTGCAGGGATCATCGCCCCGGAGTCGCCCGAGAGGTTCTGTCACC
TCTCGGACGAGGTCGTCGCCGCCGCCGCCGCAGTTCTTTCCTCCGCGGTC
CGCGGCAACGCTCCCGCGGACGGGTTCGGTCTCGCGGCAACGGTTGCCAC
GGCGGCCGCAGCAAACCAGGCGATCTCGTCTTCCTCCTCCTCCTCTTCCT
CCTCCTCCGCCGCCGCCGCCGCTGCCACTGCCACTGCTGCTGCTGCTGCT
GCCGTCACCACGTCCACCGCAGCCACCACCGCCGCCGCCGCTGCGACCAC
CGCCGCGGCTTCCGCTTCTACATCTTGCGCTGTCATCCCCGTCCCCATCG
AGGGTTTCAGCAAGGAGGCGGACGGCGATGCCGGGACCGCCACCGTTGCC
GCGGTGGCCGACGAAATGTTGCGCCTTGACCTGGACAGCCTCGCCGTCGA
TTGCAATGCCGGGCAGGGGCAGAGGAATGACGGCACGAGGCTCTTGGACG
TCTCCGCTCCTGACGACGGGGGGAGCGGTGGGGCGGTGGGCGGTGGCGGG
GGTGGTGGCGGCGGCGCCGTGGGTCCTAGCCCTCTGAAGACCGTTCGGAT
TACTGGGACAGCGGAAGAGGTACAGCTGGCCGAGTACCTCATTCGGGTCC
GGACCGCCGGCCGCGACATGGCGGCGGCTTAAACGGCTGGTGGGAGGGGG
AGCGGCACCAGCACCCCGATGCTGGCTCCGTCCTCCTCCTACAGAGGCTC
ACCGCGCGGAAGCACCAACGGTTCCGTCGAGGACTTCGGATCCGGAAACG
ACGCCGCCGCCCCAGCGCTCGGCCGCGCGTCCTCTTCGTCGGCCGTTTCG
GATGCTTCCGGCGTTGGCTCCACCATCGGTGGAGGTGGTGCGGCGGTTTC
CATTCTCGACGCCGGCGGCGCCCGCAGCGGCGGCGGTGGCAGCGCGCTCG
ACGGCAGCGATGTGGCGGTCGGAAAATTTGCTGGCAACAGCGGAGGCGGC
GGCGACGGGGAGCTTCCGGCGTGCCTCGTCGGCATCCTCGACTCCTTCTT
CGGGGGAAGATCCAGGAGCGGCGGCGAGCCGCCCCTGCGAAGCCCCTCGA
CGATAACGGGGATCGACGTGGAGGTGGGGCGCGCGGCCTTCGCCCTCCTC
GGCGTGCACGACCTGGACGACATCAAGCACCTCTCCGGTGCAGGGATCAT
CGCCCCGGAGTCGCCCGAGAGGTTCTGTCACCTCTCGGACGAGGTCGTCG
CCGCCGCCGCCGCAGTTCTTTCCTCCGCGGTCCGCGGCAACGCTCCCGCG
GACGGGTTCGGTCTCGCGGCAACGGTTGCCACGGCGGCCGCAGCAAACCA
GGCGATCTCGTCTTCCTCCTCCTCCTCTTCCTCCTCCTCCGCCGCCGCCG
CCGCTGCCACTGCCACTGCTGCTGCTGCTGCTGCCGTCACCACGTCCACC
GCAGCCACCACCGCCGCCGCCGCTGCGACCACCGCCGCGGCTTCCGCTTC
TACATCTTGCGCTGTCATCCCCGTCCCCATCGAGGGTTTCAGCAAGGAGG
CGGACGGCGATGCCGGGACCGCCACCGTTGCCGCGGTGGCCGACGAAATG
TTGCGCCTTGACCTGGACAGCCTCGCCGTCGATTGCAATGCCGGGCAGGG
GCAGAGGAATGACGGCACGAGGCTCTTGGACGTCTCCGCTCCTGACGACG
GGGGGAGCGGTGGGGCGGTGGGCGGTGGCGGGGGTGGTGGCGGCGGCGCC
GTGGGTCCTAGCCCTCTGAAGACCGTTCGGATTACTGGGACAGCGGAAGA
GGTACAGCTGGCCGAGTACCTCATTCGGGTCCGGACCGCCGGCCGCGACA
TGGCGGCGGCTTAA
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