mRNA_S-dermatodea_contig13300.1962.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13300.1962.1
Unique NamemRNA_S-dermatodea_contig13300.1962.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13300.1962.1 vs. uniprot
Match: D8LLG9_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG9_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 3.570e-44
Identity = 111/228 (48.68%), Postives = 131/228 (57.46%), Query Frame = 1 
Query:   76 VTVTGLISSLSDRGRWDEAGRVLEIAARTGAIPSSSLDGEFEVDVSRLPSAVAKVKVRATLQRILAASRTSKTE----DPASEVLQDLVFVTGTGSVAKP--AASSRPQHASDSYDP-------------------------------------GAVDSPDGGANSAAASTG-WRAQRYSDRSFNLGLLLVEDMRTAYEPPLRAKAPPEMAGCLVVKAEDLEAWVAAQ 627
            VTV  LISSLSDRGRWD+A RV+EIA +TGAIP+SSLD +FEVDVS+LP A+AKVK R TLQRIL   R S          S  L+DLVFVTGTGS  KP  A  +    A D  D                                       +V++    A+ AAA  G WR  R+SDRSF LG +LVE +RTA+ PPL+A+    +AGCLVVK EDLE W AAQ
Sbjct:  906 VTVGELISSLSDRGRWDDAQRVVEIAEKTGAIPASSLDSDFEVDVSQLPPAIAKVKARGTLQRILDVWRESSGNAEGGGATSSPLEDLVFVTGTGSATKPSPAPDTAAPWAGDVIDDDGSAGDGKDIVIDVTVSDDTSTTSTESARAEPTXXXSASVETMGTAASGAAAGRGGWRVARFSDRSFGLGRVLVEHLRTAFNPPLKAQPREFVAGCLVVKVEDLETWAAAQ 1133
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BLAST of mRNA_S-dermatodea_contig13300.1962.1 vs. uniprot
Match: A0A835YR37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR37_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.380e-8
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   91 LISSLSDRGRWDEAGRVLEIAARTGAIPSSSLDGEFEVDVSRLPSAVAKVKVRATLQRILAASRTSKTEDPASEVLQDLVFVTGTG 348
            ++++L + G  + A  V   A   GA+P S LD ++E DVS LP AVA++KVRA L+ +LAA+R S      +   +DLVFV GTG
Sbjct:    1 MVTALEEGGLREAADAVYADATARGALPDSVLDSDWEFDVSALPPAVARLKVRAVLRGVLAAAR-SXXXXXXAPAAEDLVFVCGTG 85
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13300.1962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLG9_ECTSI3.570e-4448.68PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YR37_9STRA1.380e-844.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13300contigS-dermatodea_contig13300:35..2822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue1.5e-40
Seed eggNOG ortholog2880.D8LLG9
KEGG koko:K17710
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size663
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13300.1962.1prot_S-dermatodea_contig13300.1962.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13300 62..2792 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.8915021-UTR-S-dermatodea_contig13300:34..611622924281.8915021-UTR-S-dermatodea_contig13300:34..61Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13300 35..61 +
1694079148.45395-UTR-S-dermatodea_contig13300:34..611694079148.45395-UTR-S-dermatodea_contig13300:34..61Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13300 35..61 +
1622924281.9212787-UTR-S-dermatodea_contig13300:2792..28221622924281.9212787-UTR-S-dermatodea_contig13300:2792..2822Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13300 2793..2822 +
1694079148.4879723-UTR-S-dermatodea_contig13300:2792..28221694079148.4879723-UTR-S-dermatodea_contig13300:2792..2822Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13300 2793..2822 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.9023967-CDS-S-dermatodea_contig13300:61..2771622924281.9023967-CDS-S-dermatodea_contig13300:61..277Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13300 62..277 +
1694079148.4664137-CDS-S-dermatodea_contig13300:61..2771694079148.4664137-CDS-S-dermatodea_contig13300:61..277Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13300 62..277 +
1622924281.9127116-CDS-S-dermatodea_contig13300:2402..27921622924281.9127116-CDS-S-dermatodea_contig13300:2402..2792Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13300 2403..2792 +
1694079148.4766233-CDS-S-dermatodea_contig13300:2402..27921694079148.4766233-CDS-S-dermatodea_contig13300:2402..2792Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13300 2403..2792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13300.1962.1

>prot_S-dermatodea_contig13300.1962.1 ID=prot_S-dermatodea_contig13300.1962.1|Name=mRNA_S-dermatodea_contig13300.1962.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=202bp
MKLLASMVQADLTPDAVTVTGLISSLSDRGRWDEAGRVLEIAARTGAIPS
SSLDGEFEVDVSRLPSAVAKVKVRATLQRILAASRTSKTEDPASEVLQDL
VFVTGTGSVAKPAASSRPQHASDSYDPGAVDSPDGGANSAAASTGWRAQR
YSDRSFNLGLLLVEDMRTAYEPPLRAKAPPEMAGCLVVKAEDLEAWVAAQ
G*
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mRNA from alignment at S-dermatodea_contig13300:35..2822+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13300.1962.1 ID=mRNA_S-dermatodea_contig13300.1962.1|Name=mRNA_S-dermatodea_contig13300.1962.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2788bp|location=Sequence derived from alignment at S-dermatodea_contig13300:35..2822+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGACGCGGAGGCCAGCACGAGCTCTCCATGAAGCTCCTGGCCTCCATGGT
GCAGGCCGACCTCACCCCCGACGCCGTAACGGTGACGGGTTTAATATCGT
CTCTGTCGGACCGTGGGAGGTGGGACGAGGCTGGCCGGGTGCTCGAGATT
GCGGCGCGCACGGGCGCGATCCCCTCGTCGTCGCTCGACGGGGAGTTCGA
GGTGGATGTTAGCCGTCTTCCGTCTGCGGTTGCCAAGGTTAAGGTGCGTG
CGCGTGCCTTTTGTGTGTTTTGTTTAGTGTTTGTGTGGTTTTTATGTGTT
TTTCTTGTGTGTTGTGTGTTTTGCGTCTGTGTGAGTGAGTGTTTTGTGTG
CGGTGTGTTTTGCCTATTAATAGCGTGTTATTTTTTGTGCCTGTCCGTGT
TGTGTGTTTTGTGTACAACTGTGTTTTCGTGTTTGGTTTTGTTGTGTGTG
TGTTACCGGTGTAAAATCGTGCTTGCGTGTTCTGCGTTTGTGCGTTTGTG
CGTTTGTGCGTGTGCACATTGAAGCGAAGCGAGGTAGGGCGTTTGCCGAT
CGGGAAAACTGCCTGTGTGGTCCGGGTAGTTTGAAGGTCGAGGAAAGAGA
GGTTGATAACGAAAGTGCGAAAAGCACATTGTCCTGTCATATGTGATGCG
TACATACGGAGATACTTCAGGGAATGTCGGCGAGCCGCTGAAGCGCGCGG
CACAGAAGTGCGTCATTAGAGTCGAAGCACTTGGGAGGAACCCTACCCGT
TGTAACGACGACAAACGAGATCTGAAAGAGATAGATAAGTCAAAGAGCCG
AAGCACAAACCTCTCACGGGGGTACACATATTATCAGGACCAAGTTTGTG
CTCAAGAGTGTATTCGAGCCTCGTTTTAAAGATATTTCCCCTAGTAGCTT
GAAAGAAAATAGTTTGTTTTGATTGAACGTTTCAGGTCGGAAGGTTAGCA
GATAGATGCTGCAAGGCCAGATCAGGTTGATTGATGGTAGATTGTGTTGG
GTACATGATACTGTTTGGCACATTTGGTCCTGACTACTGTGTACCCCCGT
AATGCTGTAGTGTGTGTTTGGTTGTATGGTTTTCCACTCTTCCAGGGAGT
CAGCTGGTGACATCGACTTCTCGGTAAGGTGGAGGTGATGAGTTCAATCA
ACCGTTTCCCGCCGGATTTATAGAAGCAAGCGTATTTTCTGTTCTTTGCC
GCCGACAGCTTCCGCGAGAGCTTGCGTAAGCAAAGTCCGAGATAAAATTG
TCAGCTGCGCGAGCGTTGAGCCCGATGCGCGAAAAAAACCTTAAGGCAAG
TACGGGGGGGAAGATGGGATCATCGATCCCTTGTGACCACAGACGGAATC
CGGATAAGGCAAGTCCGGTGCACGTGGATCCACTCACACACGCACGATTC
GCACACGGTTTCCCCATGTGGTTCAGCACCGGGGTTTCACTCAGCGACAC
TATTTTTTTCGCGTTGCCGAAAGTTTTCGGAGTGAAAATCGGAGGTGTTT
AATAAAACCCTGTTACACCCTCGCCGCCAAAAAGGCGGGAAAGCGACCAA
CGATACACAAGACCCCACGTACAAAAAGCCGCCACACAAAGCACCAGAAA
AGTGACCCCCTGAGACGTGCAACCCCCCTGCCTTTGAGGTTCGAGGTGGG
GTTGGTCAAGTTAGGGTTGGCTCTCGTGGCATGGAGCTGTAATACTGCTA
TATACAGGGCATGGGGTGGTTCGTGTAGTATGTCCTGTGAGCTCGGAGCC
CTTGGTCAAAGAGTTTTGTCTGTCCCCAATGGGGCGAAACGCATCACATC
CTATCGGACACCTGCCGAACATTGGATTGTTGGAACGCCAAGAGCAACCA
TTGACTTATGAGTGGTACTCCGCCAGGAGTACTCATATTAACAGATTATA
GTCCGTGTGTATCACAAATATACCGTCGTGTATGATGTGTGCGTGCGGCG
CTATTGCGTTCGCACGAAGATCAAAGCCCCTCTGCGGTACTTGGAGTATA
GTCACGCCTACTGAATGTGTAACATTTGGTTACCTTGTAGGTCTAATCAA
CCCATGGCATATCGTTTGGCTTCGCAACCGCAACGATGATGACCAGCAGC
TAGTCTCATCCTTGTGCAACGACGCCTGGNNNNNNNNNNAAAGCACGGGT
GATGGCTACAGCTGGTGTCATACATATGAAACGCAGCCTGGCTGGCCAAA
ACCAGGCATATCGCTCCGTCCCGGCATTGTTGGGACGCGTGGTCCGTGTC
CGTTTGGATACGACATGCGTTTAACTTAAGCACGCCCCGCCCCCCCACGC
GCGCCCCCACCCGCGCCCCCCCGCGCGCCTCCCCTGCCCCGCCCCCGCCC
CCCCTGTCAATTTCTAAGGTACGCGCGACGCTGCAAAGAATCCTTGCGGC
GTCAAGAACCAGCAAAACTGAAGACCCCGCCTCCGAGGTACTACAAGACC
TCGTTTTCGTCACCGGCACGGGAAGCGTCGCCAAACCCGCCGCGTCCTCC
CGCCCCCAGCACGCCAGCGATTCCTACGATCCTGGCGCGGTCGACAGCCC
CGACGGCGGCGCCAACTCGGCCGCGGCGAGCACGGGGTGGCGAGCGCAGC
GCTATTCCGACCGCAGTTTTAACCTCGGCCTGCTGCTGGTTGAGGATATG
AGGACGGCGTACGAGCCCCCCTTGCGAGCGAAGGCGCCGCCGGAGATGGC
CGGGTGCCTAGTTGTGAAGGCCGAGGATTTGGAAGCGTGGGTAGCGGCGC
AAGGGTAGCTCCGAAGAAGGGGGTGAGGGCGGAGCGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13300:35..2822+

>mRNA_S-dermatodea_contig13300.1962.1 ID=mRNA_S-dermatodea_contig13300.1962.1|Name=mRNA_S-dermatodea_contig13300.1962.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at S-dermatodea_contig13300:35..2822+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGCTCCTGGCCTCCATGGTGCAGGCCGACCTCACCCCCGACGCCGT
AACGGTGACGGGTTTAATATCGTCTCTGTCGGACCGTGGGAGGTGGGACG
AGGCTGGCCGGGTGCTCGAGATTGCGGCGCGCACGGGCGCGATCCCCTCG
TCGTCGCTCGACGGGGAGTTCGAGGTGGATGTTAGCCGTCTTCCGTCTGC
GGTTGCCAAGGTTAAGATGAAGCTCCTGGCCTCCATGGTGCAGGCCGACC
TCACCCCCGACGCCGTAACGGTGACGGGTTTAATATCGTCTCTGTCGGAC
CGTGGGAGGTGGGACGAGGCTGGCCGGGTGCTCGAGATTGCGGCGCGCAC
GGGCGCGATCCCCTCGTCGTCGCTCGACGGGGAGTTCGAGGTGGATGTTA
GCCGTCTTCCGTCTGCGGTTGCCAAGGTTAAGGTACGCGCGACGCTGCAA
AGAATCCTTGCGGCGTCAAGAACCAGCAAAACTGAAGACCCCGCCTCCGA
GGTACTACAAGACCTCGTTTTCGTCACCGGCACGGGAAGCGTCGCCAAAC
CCGCCGCGTCCTCCCGCCCCCAGCACGCCAGCGATTCCTACGATCCTGGC
GCGGTCGACAGCCCCGACGGCGGCGCCAACTCGGCCGCGGCGAGCACGGG
GTGGCGAGCGCAGCGCTATTCCGACCGCAGTTTTAACCTCGGCCTGCTGC
TGGTTGAGGATATGAGGACGGCGTACGAGCCCCCCTTGCGAGCGAAGGCG
CCGCCGGAGATGGCCGGGTGCCTAGTTGTGAAGGCCGAGGATTTGGAAGC
GTGGGTAGCGGCGCAAGGGTAGGTACGCGCGACGCTGCAAAGAATCCTTG
CGGCGTCAAGAACCAGCAAAACTGAAGACCCCGCCTCCGAGGTACTACAA
GACCTCGTTTTCGTCACCGGCACGGGAAGCGTCGCCAAACCCGCCGCGTC
CTCCCGCCCCCAGCACGCCAGCGATTCCTACGATCCTGGCGCGGTCGACA
GCCCCGACGGCGGCGCCAACTCGGCCGCGGCGAGCACGGGGTGGCGAGCG
CAGCGCTATTCCGACCGCAGTTTTAACCTCGGCCTGCTGCTGGTTGAGGA
TATGAGGACGGCGTACGAGCCCCCCTTGCGAGCGAAGGCGCCGCCGGAGA
TGGCCGGGTGCCTAGTTGTGAAGGCCGAGGATTTGGAAGCGTGGGTAGCG
GCGCAAGGGTAG
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