mRNA_S-dermatodea_contig133.1961.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig133.1961.1
Unique NamemRNA_S-dermatodea_contig133.1961.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig133.1961.1 vs. uniprot
Match: D8LED3_ECTSI (WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LED3_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.090e-10
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 GPCDPSPCLNGGSCSLDPGGGHVCSCASNFGGMQCQTDTS 123
            G C+P+PC+NGGSC +DP GG+ CSC S++GGM C+TD +
Sbjct:  399 GACNPNPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVT 438
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BLAST of mRNA_S-dermatodea_contig133.1961.1 vs. uniprot
Match: D8LED1_ECTSI (PR1-like metalloprotease n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED1_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.090e-10
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 GPCDPSPCLNGGSCSLDPGGGHVCSCASNFGGMQCQTDTS 123
            G C+P+PC+NGGSC +DP GG+ CSC S++GGM C+TD +
Sbjct:  412 GACNPNPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVT 451
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BLAST of mRNA_S-dermatodea_contig133.1961.1 vs. uniprot
Match: D7G7J6_ECTSI (Putative zinc metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J6_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.090e-10
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 GPCDPSPCLNGGSCSLDPGGGHVCSCASNFGGMQCQTDTS 123
            G C+P+PC+NGGSC +DP GG+ CSC S++GGM C+TD +
Sbjct:  503 GACNPNPCMNGGSCEVDPNGGYTCSCGSSYGGMMCETDVT 542
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BLAST of mRNA_S-dermatodea_contig133.1961.1 vs. uniprot
Match: D8LED2_ECTSI (Ig-like protein, group 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED2_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.470e-10
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    4 GPCDPSPCLNGGSCSLDPGGGHVCSCASNFGGMQCQTDTS 123
            G CDP+PC+NGGSC +DP GG+ CSC S++G M C+TD +
Sbjct:  125 GACDPNPCMNGGSCEVDPNGGYTCSCGSSYGAMMCETDVT 164
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BLAST of mRNA_S-dermatodea_contig133.1961.1 vs. uniprot
Match: D8LJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJN8_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.030e-10
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    4 GPCDPSPCLNGGSCSLDPGGGHVCSCASNFGGMQCQTDTS 123
            G C+P+PCLN GSC +DP GG+ CSC+S++GGM C+TDT+
Sbjct:  381 GECNPNPCLNEGSCEVDPNGGYSCSCSSSYGGMNCETDTT 420
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BLAST of mRNA_S-dermatodea_contig133.1961.1 vs. uniprot
Match: A0A0F6VYW7_9DELT (Uncharacterized protein n=2 Tax=Sandaracinus amylolyticus TaxID=927083 RepID=A0A0F6VYW7_9DELT)

HSP 1 Score: 50.4 bits (119), Expect = 8.290e-6
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    7 PCDPSPCLNGGSCSLDPGGGHVCSCASNFGGMQCQTD 117
            PC+PSPCLNGG+C  D  G   C+CA+ + G  C+TD
Sbjct:   70 PCEPSPCLNGGTCREDDDGAFTCTCAAGYEGETCETD 106
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BLAST of mRNA_S-dermatodea_contig133.1961.1 vs. uniprot
Match: A0A8B8B0W9_CRAVI (protocadherin Fat 4-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8B0W9_CRAVI)

HSP 1 Score: 48.9 bits (115), Expect = 2.100e-5
Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:    1 SGPCDPSPCLNGGSCSLDPGGGHVCSCASNFGGMQCQTDTSCECILDR 144
            S PC+P+PCLNGG+CS    G  VC+C   + G  CQT  S   +L +
Sbjct:   21 SNPCNPNPCLNGGTCSQSSSGSAVCACVQGWTGSLCQTQVSGGTLLHK 68
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig133.1961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LED3_ECTSI1.090e-1060.00WSC domain protein n=3 Tax=Ectocarpus TaxID=2879 R... [more]
D8LED1_ECTSI1.090e-1060.00PR1-like metalloprotease n=2 Tax=Ectocarpus silicu... [more]
D7G7J6_ECTSI1.090e-1060.00Putative zinc metalloendopeptidase n=1 Tax=Ectocar... [more]
D8LED2_ECTSI1.470e-1060.00Ig-like protein, group 2 n=1 Tax=Ectocarpus silicu... [more]
D8LJN8_ECTSI2.030e-1062.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0F6VYW7_9DELT8.290e-654.05Uncharacterized protein n=2 Tax=Sandaracinus amylo... [more]
A0A8B8B0W9_CRAVI2.100e-545.83protocadherin Fat 4-like n=1 Tax=Crassostrea virgi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig133contigS-dermatodea_contig133:29853..30011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog2880.D8LED4
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E9TD@1,2SG44@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.861587-CDS-S-dermatodea_contig133:29852..300111622924281.861587-CDS-S-dermatodea_contig133:29852..30011Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig133 29853..30011 +
1694079148.4387374-CDS-S-dermatodea_contig133:29852..300111694079148.4387374-CDS-S-dermatodea_contig133:29852..30011Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig133 29853..30011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig133.1961.1prot_S-dermatodea_contig133.1961.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig133 29853..30011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig133.1961.1

>prot_S-dermatodea_contig133.1961.1 ID=prot_S-dermatodea_contig133.1961.1|Name=mRNA_S-dermatodea_contig133.1961.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
SGPCDPSPCLNGGSCSLDPGGGHVCSCASNFGGMQCQTDTSCECILDREV
SI*
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mRNA from alignment at S-dermatodea_contig133:29853..30011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig133.1961.1 ID=mRNA_S-dermatodea_contig133.1961.1|Name=mRNA_S-dermatodea_contig133.1961.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at S-dermatodea_contig133:29853..30011+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAGGTCCGTGCGATCCAAGTCCCTGCCTGAACGGGGGATCGTGTTCACT
GGACCCTGGGGGTGGGCACGTGTGCTCATGTGCTTCGAACTTCGGAGGGA
TGCAGTGCCAAACTGATACGTCATGTGAGTGTATTCTCGATAGAGAGGTG
TCTATATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig133:29853..30011+

>mRNA_S-dermatodea_contig133.1961.1 ID=mRNA_S-dermatodea_contig133.1961.1|Name=mRNA_S-dermatodea_contig133.1961.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig133:29853..30011+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAGGTCCGTGCGATCCAAGTCCCTGCCTGAACGGGGGATCGTGTTCACT
GGACCCTGGGGGTGGGCACGTGTGCTCATGTGCTTCGAACTTCGGAGGGA
TGCAGTGCCAAACTGATACGTCATGTGAGTGTATTCTCGATAGAGAGGTG
TCTATATAGTCAGGTCCGTGCGATCCAAGTCCCTGCCTGAACGGGGGATC
GTGTTCACTGGACCCTGGGGGTGGGCACGTGTGCTCATGTGCTTCGAACT
TCGGAGGGATGCAGTGCCAAACTGATACGTCATGTGAGTGTATTCTCGAT
AGAGAGGTGTCTATATAG
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