mRNA_S-dermatodea_contig13297.1960.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13297.1960.1
Unique NamemRNA_S-dermatodea_contig13297.1960.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13297.1960.1 vs. uniprot
Match: F0YCD1_AURAN (DUF667 domain-containing protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=F0YCD1_AURAN)

HSP 1 Score: 360 bits (924), Expect = 4.900e-118
Identity = 181/208 (87.02%), Postives = 187/208 (89.90%), Query Frame = 3 
Query:  321 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEASPFKYIRYENDFKDIELGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQ 944
            MFRNTFQSGFLS+LYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEI+GTNVST +ITCPADA +TLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE                  GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPI K+
Sbjct:    1 MFRNTFQSGFLSVLYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIMGTNVSTNYITCPADAKRTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE------------------GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPIQKE 190
[Close]
BLAST of mRNA_S-dermatodea_contig13297.1960.1 vs. uniprot
Match: A0A7S3T0V3_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3T0V3_EMIHU)

HSP 1 Score: 362 bits (930), Expect = 1.510e-117
Identity = 186/227 (81.94%), Postives = 195/227 (85.90%), Query Frame = 3 
Query:  300 GRGAGRAMFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEASPFKYIRYENDFKDIELGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQDG----QGQQAP 968
            G   G+AMF+NTFQSGFLSILYSIGSKPLQIW+++VRNGHIKRITD DIQSSVLEI+ TN+STT+ITCP DASKTLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE                  GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPI KQ      QGQ AP
Sbjct:   85 GSALGKAMFKNTFQSGFLSILYSIGSKPLQIWEREVRNGHIKRITDNDIQSSVLEIMSTNISTTYITCPDDASKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE------------------GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPIQKQAAAQQEQGQAAP 293
[Close]
BLAST of mRNA_S-dermatodea_contig13297.1960.1 vs. uniprot
Match: A0A0G4IXT0_PLABS (DUF667 domain-containing protein n=9 Tax=Eukaryota TaxID=2759 RepID=A0A0G4IXT0_PLABS)

HSP 1 Score: 357 bits (915), Expect = 7.190e-117
Identity = 181/208 (87.02%), Postives = 185/208 (88.94%), Query Frame = 3 
Query:  321 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEASPFKYIRYENDFKDIELGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQ 944
            MFRNTFQSGFLSILYSIGSKPLQIWDK+VRNGHIKRITDQDIQSSVLEI+GTNVST FITCPA+   TLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE                  GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPI KQ
Sbjct:    1 MFRNTFQSGFLSILYSIGSKPLQIWDKEVRNGHIKRITDQDIQSSVLEIMGTNVSTNFITCPANPKNTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE------------------GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPIQKQ 190
[Close]
BLAST of mRNA_S-dermatodea_contig13297.1960.1 vs. uniprot
Match: A0A812SKJ0_SYMMI (Bug22 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SKJ0_SYMMI)

HSP 1 Score: 357 bits (916), Expect = 8.050e-117
Identity = 183/219 (83.56%), Postives = 190/219 (86.76%), Query Frame = 3 
Query:  321 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEASPFKYIRYENDFKDIELGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQDGQGQQAPLAA 977
            MFRNT+QSGFLSILYSIGSKPLQIWDKKVRNGHIKR+TD DIQSSVLEI+GTNVSTTFI CPAD  KTLGIKLPFLVMI+KNL+KYFTFEV VLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE                  GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPIT+Q    QQ P +A
Sbjct:    1 MFRNTYQSGFLSILYSIGSKPLQIWDKKVRNGHIKRMTDPDIQSSVLEIMGTNVSTTFIQCPADPKKTLGIKLPFLVMIIKNLRKYFTFEVMVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE------------------GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITQQQ---QQQPASA 198
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BLAST of mRNA_S-dermatodea_contig13297.1960.1 vs. uniprot
Match: F4NX01_BATDJ (DUF667 domain-containing protein n=13 Tax=Eukaryota TaxID=2759 RepID=F4NX01_BATDJ)

HSP 1 Score: 356 bits (913), Expect = 1.430e-116
Identity = 179/209 (85.65%), Postives = 186/209 (89.00%), Query Frame = 3 
Query:  321 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEASPFKYIRYENDFKDIELGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQD 947
            MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITD DIQSSVLEI+GTNVST +ITCPA  ++TLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLD+                  GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPI KQ+
Sbjct:    1 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSSVLEIIGTNVSTNYITCPAQQNRTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDD------------------GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPIQKQN 191
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BLAST of mRNA_S-dermatodea_contig13297.1960.1 vs. uniprot
Match: A0A1R2AXQ3_9CILI (DUF667 domain-containing protein n=11 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AXQ3_9CILI)

HSP 1 Score: 355 bits (910), Expect = 5.000e-116
Identity = 177/208 (85.10%), Postives = 186/208 (89.42%), Query Frame = 3 
Query:  321 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEASPFKYIRYENDFKDIELGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQ 944
            MF+NTFQSGFLSILYSIGSKPLQIWDK VRNGHIKRITD DIQSSVLEI+GTNVSTTFITCPAD ++TLGIKLPFLVMI+KNLKKYFTFEVQVLDDKN+RRRFRASNYQSTTRVKPFICTMPMRLDE                  GWNQIQFNLSDFTRRAYGTNYIETLRVQ+HANCR+RRIYFSDRLYSEEELPPEFKLFLP+ KQ
Sbjct:    8 MFKNTFQSGFLSILYSIGSKPLQIWDKSVRNGHIKRITDTDIQSSVLEIMGTNVSTTFITCPADPNQTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNIRRRFRASNYQSTTRVKPFICTMPMRLDE------------------GWNQIQFNLSDFTRRAYGTNYIETLRVQLHANCRLRRIYFSDRLYSEEELPPEFKLFLPLQKQ 197
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BLAST of mRNA_S-dermatodea_contig13297.1960.1 vs. uniprot
Match: A0A1I8Q6M5_STOCA (DUF667 domain-containing protein n=3 Tax=Bilateria TaxID=33213 RepID=A0A1I8Q6M5_STOCA)

HSP 1 Score: 355 bits (910), Expect = 5.760e-116
Identity = 178/207 (85.99%), Postives = 184/207 (88.89%), Query Frame = 3 
Query:  321 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEASPFKYIRYENDFKDIELGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITK 941
            MF+NTFQSGFLS+LYSIGSKPLQIWDKKVRNGHIKRITD DIQS VLEIVGTNVSTTFITCPAD  KTLGIKLPFLVMI+KN+KKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE                  GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRR+YFSDRLYSE+ELPPEFKLFLPI K
Sbjct:    1 MFKNTFQSGFLSVLYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFITCPADPKKTLGIKLPFLVMIIKNVKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE------------------GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPPEFKLFLPIQK 189
[Close]
BLAST of mRNA_S-dermatodea_contig13297.1960.1 vs. uniprot
Match: A0A0G4GPC9_9ALVE (DUF667 domain-containing protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0G4GPC9_9ALVE)

HSP 1 Score: 355 bits (910), Expect = 6.870e-116
Identity = 176/216 (81.48%), Postives = 188/216 (87.04%), Query Frame = 3 
Query:  321 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEASPFKYIRYENDFKDIELGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQDGQGQQAP 968
            MF+NTFQSGFLSILYS+GSKPLQIWDK+V+NGHIKR+TD DIQSSVLEI+GTNVST FITCPAD +KTLGIKLPFLVMI+KNLKKYFTFEVQVLDDKN+RRRFRASNYQSTTRVKPFICTMPMRLDE                  GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCR+RRIYFSDRLYSE+ELPPEFKLFLP+ K   Q  Q P
Sbjct:    1 MFKNTFQSGFLSILYSVGSKPLQIWDKQVQNGHIKRLTDSDIQSSVLEIMGTNVSTNFITCPADPTKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNIRRRFRASNYQSTTRVKPFICTMPMRLDE------------------GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRVRRIYFSDRLYSEDELPPEFKLFLPVQKTQQQTAQQP 198
[Close]
BLAST of mRNA_S-dermatodea_contig13297.1960.1 vs. uniprot
Match: CFA20_DROME (Cilia- and flagella-associated protein 20 n=39 Tax=Endopterygota TaxID=33392 RepID=CFA20_DROME)

HSP 1 Score: 354 bits (909), Expect = 7.580e-116
Identity = 177/207 (85.51%), Postives = 184/207 (88.89%), Query Frame = 3 
Query:  321 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEASPFKYIRYENDFKDIELGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITK 941
            MF+NTFQSGFLSILYSIGSKPLQ+WDKKVRNGHIKRITD DIQS VLEIVGTNVSTTFITCPAD  KTLGIKLPFLVMI+KN+KKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE                  GWNQIQFNLSDFTRRAYGTNY+ETLRVQIHANCRIRR+YFSDRLYSE+ELPPEFKLFLPI K
Sbjct:    1 MFKNTFQSGFLSILYSIGSKPLQLWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFITCPADPKKTLGIKLPFLVMIIKNMKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE------------------GWNQIQFNLSDFTRRAYGTNYVETLRVQIHANCRIRRVYFSDRLYSEDELPPEFKLFLPIQK 189
[Close]
BLAST of mRNA_S-dermatodea_contig13297.1960.1 vs. uniprot
Match: A0A6U3TV15_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6U3TV15_9STRA)

HSP 1 Score: 356 bits (913), Expect = 7.800e-116
Identity = 180/214 (84.11%), Postives = 187/214 (87.38%), Query Frame = 3 
Query:  321 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEASPFKYIRYENDFKDIELGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQDGQGQQ 962
            MFRNTFQSGFLSILYSIGSKPLQIWD  VRNGHIKRITD DIQSSVLEI+GTNVST +I CPA++ KTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE                  GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPI K+D + +Q
Sbjct:    1 MFRNTFQSGFLSILYSIGSKPLQIWDATVRNGHIKRITDPDIQSSVLEIMGTNVSTNYIVCPAESKKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDE------------------GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPIVKRDEENEQ 196
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13297.1960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YCD1_AURAN4.900e-11887.02DUF667 domain-containing protein n=3 Tax=Ochrophyt... [more]
A0A7S3T0V3_EMIHU1.510e-11781.94Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A0G4IXT0_PLABS7.190e-11787.02DUF667 domain-containing protein n=9 Tax=Eukaryota... [more]
A0A812SKJ0_SYMMI8.050e-11783.56Bug22 protein n=1 Tax=Symbiodinium microadriaticum... [more]
F4NX01_BATDJ1.430e-11685.65DUF667 domain-containing protein n=13 Tax=Eukaryot... [more]
A0A1R2AXQ3_9CILI5.000e-11685.10DUF667 domain-containing protein n=11 Tax=Stentor ... [more]
A0A1I8Q6M5_STOCA5.760e-11685.99DUF667 domain-containing protein n=3 Tax=Bilateria... [more]
A0A0G4GPC9_9ALVE6.870e-11681.48DUF667 domain-containing protein n=2 Tax=Eukaryota... [more]
CFA20_DROME7.580e-11685.51Cilia- and flagella-associated protein 20 n=39 Tax... [more]
A0A6U3TV15_9STRA7.800e-11684.11Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13297contigS-dermatodea_contig13297:896..5642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score388.7
Seed ortholog evalue1.9e-105
Seed eggNOG ortholog2880.D7G852
Preferred nameDUF667
GOsGO:0000003,GO:0000226,GO:0000375,GO:0000377,GO:0000398,GO:0001578,GO:0003006,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005879,GO:0005881,GO:0005929,GO:0005930,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009987,GO:0010467,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0018094,GO:0018193,GO:0018200,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0031514,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032879,GO:0032886,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0035082,GO:0036064,GO:0036126,GO:0036211,GO:0040011,GO:0040012,GO:0040017,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0046483,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048520,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050795,GO:0051179,GO:0051234,GO:0051270,GO:0051272,GO:0051641,GO:0051674,GO:0051704,GO:0060259,GO:0060271,GO:0060295,GO:0060296,GO:0060632,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0072594,GO:0090304,GO:0097014,GO:0097223,GO:0097540,GO:0097545,GO:0097722,GO:0097729,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901317,GO:1901360,GO:1901564,GO:1902019,GO:1902093,GO:1990716,GO:2000145,GO:2000147,GO:2000155,GO:2000253
EggNOG free text desc.regulation of cilium movement involved in cell motility
EggNOG OGsKOG3213@1,KOG3213@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFlagellar Associated Protein
Ec32 orthologEc-12_001470.1
Exons3
Model size2046
Cds size663
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13297.1960.1prot_S-dermatodea_contig13297.1960.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13297 1216..4579 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.779489-UTR-S-dermatodea_contig13297:895..12151622924281.779489-UTR-S-dermatodea_contig13297:895..1215Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13297 896..1215 +
1694079148.383935-UTR-S-dermatodea_contig13297:895..12151694079148.383935-UTR-S-dermatodea_contig13297:895..1215Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13297 896..1215 +
1622924281.8231883-UTR-S-dermatodea_contig13297:4579..56421622924281.8231883-UTR-S-dermatodea_contig13297:4579..5642Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13297 4580..5642 +
1694079148.4283879-UTR-S-dermatodea_contig13297:4579..56421694079148.4283879-UTR-S-dermatodea_contig13297:4579..5642Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13297 4580..5642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.7915878-CDS-S-dermatodea_contig13297:1215..12681622924281.7915878-CDS-S-dermatodea_contig13297:1215..1268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13297 1216..1268 +
1694079148.4004838-CDS-S-dermatodea_contig13297:1215..12681694079148.4004838-CDS-S-dermatodea_contig13297:1215..1268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13297 1216..1268 +
1622924281.8071253-CDS-S-dermatodea_contig13297:2850..32321622924281.8071253-CDS-S-dermatodea_contig13297:2850..3232Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13297 2851..3232 +
1694079148.408726-CDS-S-dermatodea_contig13297:2850..32321694079148.408726-CDS-S-dermatodea_contig13297:2850..3232Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13297 2851..3232 +
1622924281.8156507-CDS-S-dermatodea_contig13297:4351..45791622924281.8156507-CDS-S-dermatodea_contig13297:4351..4579Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13297 4352..4579 +
1694079148.4182503-CDS-S-dermatodea_contig13297:4351..45791694079148.4182503-CDS-S-dermatodea_contig13297:4351..4579Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13297 4352..4579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13297.1960.1

>prot_S-dermatodea_contig13297.1960.1 ID=prot_S-dermatodea_contig13297.1960.1|Name=mRNA_S-dermatodea_contig13297.1960.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=221bp
MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIV
GTNVSTTFITCPADASKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVR
RRFRASNYQSTTRVKPFICTMPMRLDEASPFKYIRYENDFKDIELGWNQI
QFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFK
LFLPITKQDGQGQQAPLAAT*
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mRNA from alignment at S-dermatodea_contig13297:896..5642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13297.1960.1 ID=mRNA_S-dermatodea_contig13297.1960.1|Name=mRNA_S-dermatodea_contig13297.1960.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4747bp|location=Sequence derived from alignment at S-dermatodea_contig13297:896..5642+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCAGCCGAGGCAATACAAGGCAAAGCACCCACCCACACCACGCCGCTGG
CTGATCGCGAGTGGCACACGAAGCGATACACATAGAGCAGCCGGCATAAC
TCCCACCAGCTGAGCGAAATCAACTTGCCCGCTCGCCGCGGCATACCTAC
GCTAGCTCGCCCTTACGAGAGGTTACCGAGTCTTCGCCGAGGAAAACAAG
CGGTCAAATATCTGCCGATCTGTCATAAACCAAAAGTTGGGGGTCGCTGT
CGCTGGCGCGCGCAGCAGCTAAGCAGCGCCTGTGCTTGACGCGGGCTGAG
GACGGGGGGCGGGGAGGGCCATGTTTCGGAACACGTTCCAGTCGGGCTTT
CTCTCCATCTTGTACAGCATAGGGTGAGTGAGCTGACTACGTGCCGTCTT
TCTGCGAAGGGTGGAATCTGCGTGCAATTGCCTCCAGTCGAGGTATGATC
TATCTGATATCTGATACGCTGAAGAACAAGACGTGCTTCTCTTACTGCGA
GGCAGGCTTTGTTGTAGCCCGCCGGGGCAGCGAAGTTGGCTGCGGGGGCG
ACATTGTGTTAGGAGCTGAGAGTGCACCTCTTTGATCCCTGCGGATATCT
ACTGTGCGGTCGTCTGGGCCTCTGAAGATGGCTTTGGTGCTGTCATAGTG
TTTGATAGTATCTGCAGCGTGAGAAACTCGAATGCTGCCTCCACTACGTA
CAAGTACGACTCGTGCTGCTGCTGTGCTGTTGGAGGCCTCTCTATACTGC
TACTGCTCTGTACACGATGGGGGTAGTCTGTGCTACTTAGCCACACAGCA
GTGGTATGACACTGCTGTGCGCAGTCGTCCGAACCGCAGCTGATGTGCCG
CAGTTCCTGAGCGTTACATCCAAACCTTGTAACACAAGCACTTTGTTATC
ATAGTACTGGAGGTACATTCAACCTGCTATCATACAAGTACCAAACCTTT
CGGGACTTAGGCTGTTTTCGGGTAACTGTTTGCTATTATGGTAACCAACA
GTTACCCGAAAACAGNNNNNNNNNNTAGTCCCAAAAGGGTAAATAATAAT
AGCAAACAAGTTACCCGAAAACAGCTTTAGCCCTAAAAGGGTTAAGCTCT
ATACATATTATAGCTCTACAGCAGTATTACTTGTATTAAATGTAATAGTA
TAGAGCTCTATGAAGACAACTTGCAGGGCCCAATTCCGCCCAGTTGTCGG
GAGAGTTCGCCATGCACGGCAGCAGCATGCACACACCCACCCCGTACAAA
TAAAAAAAGCGGTGCGCTGACTCTTTCCACTGCTATAATGTATCCAAGCA
CTTCTATGATATGCATACAAGTACCAGGTATCACACTTGTACATAGTCCT
CTCTGACTCCGAGCGTTTGGTCGTGTTCATTATTTGTTACCAGGTATTAT
ACCAGGTATGTCCTACAACCTATATTATAGTGTTATTTAAAGGTAGCTCC
GTGAGTTTTTTTTTTATTTTCTCGCTTTATCATTTGACCACGAGTGAGCG
AGATCGGCAGGCAGTTGGGTGGGACCGGCGTGGGTAGGTTGGTTGTAAGT
GTGGCAATTAACCAATCAAAAAAATCAAATCAAATCAAATCAAATCAAAT
CAAATCAATAAAATGGGAAGATCCTTGGACGGATCTGGGGTTTGTGGAGG
CGGTATATAATTATTATTAATAGTGGCGTCAGGTGTCAATATAGCTCTAG
TCCTAAGAGAACGCACGAGAACGGTTGGCTGGGCGCTTGCCTCAGAGAAA
CTCTGCAGCAGCAAAGAAGAGGGAGAGGCAGCAGCATCCAGAGGAGTAGA
CAACAAGGGTACTTCGCGATCGACTTATCCAGATTTTCAATGCCATAATT
CTTGAGCTAAAACGAAAAATCAAGATCAATCAATGCTCCCGCGTCGCGTG
CGCGTGCACGACTGATGTATTGACAACAACAACAACCTACGCGAACCGGC
GGCAGGTCGAAGCCATTGCAAATATGGGATAAAAAAGTGCGCAACGGGCA
CATCAAGCGCATCACGGACCAGGACATCCAGTCCTCCGTGCTCGAGATCG
TGGGCACCAACGTCTCCACCACGTTCATCACGTGCCCGGCGGACGCCAGC
AAGACCCTGGGCATCAAGCTCCCCTTCCTCGTGATGATCCTGAAGAACTT
GAAGAAGTACTTCACCTTCGAGGTTCAGGTGCTGGACGACAAGAATGTCC
GGAGGAGATTCCGCGCGTCGAACTACCAGAGCACGACGCGCGTCAAGCCG
TTCATCTGCACGATGCCCATGCGGTTGGACGAGGCGAGCCCATTCAAATA
CATAAGATATGAGAATGATTTCAAAGACATTGAGCTAGTAATAGTAATAG
AGCGTTGGGATCCCACCTTTTTTAGAACGGAAGGTAGGTAGCCCCATAAA
AATAAAAATAACTGGTTAAAAAAATATGGAGCGAGCGTTAGGGTCCCTCC
CACCTTTTTTCAAGAGGGAAATAGGATGGTCCAAGCTGTTAAACACACCT
ATGGAGGCTAGGCTCACTTGTTGCGTGTGATGCTATGATGTCATGTTATG
TATGGTGTTACAGTATATGGTGATGGTACAAGAGTCTTTGTCCTGAGCAA
TACCCCCCCCCCCCTGAAGCGAGAAAATATAAATATTATTAAACACAAAG
CGAGCTTTGGGTTCCAACTGTATTGTACTACTACTGTACAGTATATTGTA
CTATAATACTGTATTGTACAATTAATACTGTATTATATTCTATACTATAC
TACAGTATACTATACTATACTGTATTGTACTATAATAGTAGAGAGGAAAG
GTAAGGTGGCCCAAGCTAAGTAACTCAGTGGAGGTCTACGTTTGTGTATG
ATGCTATGGGGACCTACTACTGTTGTACTACTACACCTGTACTATTAATA
TTATACTATGCACTAGATTACATTGAAGGTGCTACATTGAAGATGCCTGC
CGATTAGGTACGGTCACGTTTTCCGATGGCCAGCCCGATACTACCACAAT
TAGTATCAATAGTGTTTCCTCGTCGTGATATTTCGGTCTAAAAACTGCTA
CTATACTATACCAATACAAATATGTCTTACTATATTAACCCTTTGGTACT
ATTAAGTTAGTAGTATTTGAATTAGTGTTAATAGGGCTCTCCGAAACGAC
CAAAACCTCTCTCGATGCCAGTCGACAGCTACAGCCCCGTTTCCCTTAGG
TTCAGTTCTCTCTCATTACTGAGTCATAACCCATGCGCTTCCCCAGGGCC
CCGCTTCAAGCACGCCTCATTACGGGCTAACCGGCGCTCCAAACAGGGGG
CTAGTACCAAAGGGCTAATATGTGGTATTGATAGGTTTATCCCATGGTTG
AGCGGTCGCCCCATGGCCCCCTCCTTCCTTCTTCCCCCACATACTGGACT
CACACCACCACCACCACCACCACCACCACCACCACCACCACCGCCGCGTG
TACCAGGGTTGGAACCAGATTCAGTTCAACCTCAGCGACTTCACGCGCCG
AGCGTACGGCACGAACTACATCGAGACCCTGCGGGTGCAGATCCACGCGA
ACTGCCGCATTCGCCGCATCTACTTCTCCGACCGCCTCTACTCGGAGGAG
GAGCTCCCGCCGGAGTTCAAGCTCTTCCTCCCCATCACGAAGCAGGACGG
TCAGGGGCAGCAGGCGCCGCTCGCGGCCACCTGATATGGATAGGAAAGGA
AGAAAGAAATAATAGCCGCTTTTTTGTTTGTTTGTTTGCGGCTAGCCGCT
TCACGGCGGGCTGCGCGCTGCTATGCATACCTGAGGTGGGGATGGATGAA
AAAAGAAGGCTGTGTTAATTCACCGGATGCGCTTGGAGCTGAATCAAGCC
AGCGCGAGGCGGCACTCTAGCCAGCTTTAGCAGGGAAAGGGGGGAAGGAG
AGCGGTGATTGGTTGGCGCTTCTGTGGTCGGGGAACGGGGGGTCGGGCGG
TGATTGGCTAGCGCCCCTGTAGTCGGGGAAGAGAGGAGCAGTGATTGGCT
GGCGCCGCGCTGTATGATAGCAGCGGGACGCGCCCTCGCCGGTGCGTCGG
GGTTGGAACGCGGAGTTCCGCGATATTTGTATGTGCGTATTTTGTTTTGT
GTGTGATTTTGGCCTCCAAGTATTTTGGAACGCGTGGGTCGAAAGAGCGC
GGCGGGCATTCTGGCGTTTGCCCCGAGTCGAGAGAGAGAGAGAGAGAGAA
GAGTGTTGTCGGCGTGTTACGGCGGACACAGCTCAGGTCAGACGAACGAA
GGAATTATGTCGTGCTGCCTGAGGGGGGGGGCACAGTGTTCGGATGTATG
GGGCGTCTCGAAGGGTGGGGTAAAACAAGCCGACACGTACTTGAGAGGCC
ACCACACGGAGGGCAACCGACGGACCGCGCCGAATGCGAGTGGCTCCAGT
GTGCGAGCGACGGGATGATGAGCTTGAAAAGTCGACGAGCGCGAGCGCGC
GCGCGTGCGCATGCGCGTTATCCGCCACGATACGATATGGGCATGATAGG
GCCCTAAATCGTTGTTGGAAGTAAGCATGTTCGGGCGCCGTATTTTAATT
CATTCGGTGGATTGATTGATTGATTGACTGATTGATTGGCTGATTGATAT
ATTGACTGTTTTTTTTTGTTATTCATTAGCACCCGACTTGTGGTCAGATG
CTATATTATAGCAAAGAGTCAAGGAGAAACTAACTGATCGTATCTCTACA
TCTGCCATAATTCAGATTACCGTCCCTGGTACTTACTTATATATAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13297:896..5642+

>mRNA_S-dermatodea_contig13297.1960.1 ID=mRNA_S-dermatodea_contig13297.1960.1|Name=mRNA_S-dermatodea_contig13297.1960.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at S-dermatodea_contig13297:896..5642+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTTCGGAACACGTTCCAGTCGGGCTTTCTCTCCATCTTGTACAGCAT
AGGATGTTTCGGAACACGTTCCAGTCGGGCTTTCTCTCCATCTTGTACAG
CATAGGGTCGAAGCCATTGCAAATATGGGATAAAAAAGTGCGCAACGGGC
ACATCAAGCGCATCACGGACCAGGACATCCAGTCCTCCGTGCTCGAGATC
GTGGGCACCAACGTCTCCACCACGTTCATCACGTGCCCGGCGGACGCCAG
CAAGACCCTGGGCATCAAGCTCCCCTTCCTCGTGATGATCCTGAAGAACT
TGAAGAAGTACTTCACCTTCGAGGTTCAGGTGCTGGACGACAAGAATGTC
CGGAGGAGATTCCGCGCGTCGAACTACCAGAGCACGACGCGCGTCAAGCC
GTTCATCTGCACGATGCCCATGCGGTTGGACGAGGCGAGCCCATTCAAAT
ACATAAGATATGAGAATGATTTCAAAGACATTGAGCTAGTCGAAGCCATT
GCAAATATGGGATAAAAAAGTGCGCAACGGGCACATCAAGCGCATCACGG
ACCAGGACATCCAGTCCTCCGTGCTCGAGATCGTGGGCACCAACGTCTCC
ACCACGTTCATCACGTGCCCGGCGGACGCCAGCAAGACCCTGGGCATCAA
GCTCCCCTTCCTCGTGATGATCCTGAAGAACTTGAAGAAGTACTTCACCT
TCGAGGTTCAGGTGCTGGACGACAAGAATGTCCGGAGGAGATTCCGCGCG
TCGAACTACCAGAGCACGACGCGCGTCAAGCCGTTCATCTGCACGATGCC
CATGCGGTTGGACGAGGCGAGCCCATTCAAATACATAAGATATGAGAATG
ATTTCAAAGACATTGAGCTAGGTTGGAACCAGATTCAGTTCAACCTCAGC
GACTTCACGCGCCGAGCGTACGGCACGAACTACATCGAGACCCTGCGGGT
GCAGATCCACGCGAACTGCCGCATTCGCCGCATCTACTTCTCCGACCGCC
TCTACTCGGAGGAGGAGCTCCCGCCGGAGTTCAAGCTCTTCCTCCCCATC
ACGAAGCAGGACGGTCAGGGGCAGCAGGCGCCGCTCGCGGCCACCTGAGG
TTGGAACCAGATTCAGTTCAACCTCAGCGACTTCACGCGCCGAGCGTACG
GCACGAACTACATCGAGACCCTGCGGGTGCAGATCCACGCGAACTGCCGC
ATTCGCCGCATCTACTTCTCCGACCGCCTCTACTCGGAGGAGGAGCTCCC
GCCGGAGTTCAAGCTCTTCCTCCCCATCACGAAGCAGGACGGTCAGGGGC
AGCAGGCGCCGCTCGCGGCCACCTGA
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