mRNA_S-dermatodea_contig13294.1958.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13294.1958.1
Unique NamemRNA_S-dermatodea_contig13294.1958.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13294.1958.1 vs. uniprot
Match: D7FGT9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT9_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.570e-18
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:  808 ARGGDATLVELLTGPVGRADPGLRDGEGNQALHIAEACGHLGVVKVMVEKAGADLG 975
            ARGGD  LVELLTGP+GRAD GLRDG G+QALHIA  CGHLGVVKV+VEKAGADLG
Sbjct:  423 ARGGDTDLVELLTGPLGRADIGLRDGTGSQALHIAAGCGHLGVVKVLVEKAGADLG 478
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BLAST of mRNA_S-dermatodea_contig13294.1958.1 vs. uniprot
Match: A0A6H5KTJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ5_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.410e-17
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:  811 RGGDATLVELLTGPVGRADPGLRDGEGNQALHIAEACGHLGVVKVMVEKAGADLG 975
            RGGD  LVELLTGP GRAD GLRDG G+QALHIA  CGHLGVVKV+VEKAGADLG
Sbjct:  170 RGGDTDLVELLTGPFGRADIGLRDGTGSQALHIAAGCGHLGVVKVLVEKAGADLG 224
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BLAST of mRNA_S-dermatodea_contig13294.1958.1 vs. uniprot
Match: A0A6H5KW62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW62_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 7.740e-6
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 QIVKLLVGVYGAEFAQPASNGSTPLHWAAARGNLAVV 111
            QIVKLL GVYGAE A PA NGSTPLHWAA++G   V+
Sbjct:  180 QIVKLLAGVYGAEAAVPAGNGSTPLHWAASKGRRGVM 216
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13294.1958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FGT9_ECTSI2.570e-1883.93Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KTJ5_9PHAE1.410e-1783.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW62_9PHAE7.740e-672.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13294contigS-dermatodea_contig13294:874..4776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue4.9e-17
Seed eggNOG ortholog2880.D7FGT9
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size993
Cds size993
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13294.1958.1prot_S-dermatodea_contig13294.1958.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13294 874..4776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.665581-CDS-S-dermatodea_contig13294:873..13151622924281.665581-CDS-S-dermatodea_contig13294:873..1315Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13294 874..1315 -
1694079148.3062654-CDS-S-dermatodea_contig13294:873..13151694079148.3062654-CDS-S-dermatodea_contig13294:873..1315Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13294 874..1315 -
1622924281.6758516-CDS-S-dermatodea_contig13294:2204..23411622924281.6758516-CDS-S-dermatodea_contig13294:2204..2341Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13294 2205..2341 -
1694079148.3168342-CDS-S-dermatodea_contig13294:2204..23411694079148.3168342-CDS-S-dermatodea_contig13294:2204..2341Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13294 2205..2341 -
1622924281.6864374-CDS-S-dermatodea_contig13294:2791..29531622924281.6864374-CDS-S-dermatodea_contig13294:2791..2953Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13294 2792..2953 -
1694079148.3268754-CDS-S-dermatodea_contig13294:2791..29531694079148.3268754-CDS-S-dermatodea_contig13294:2791..2953Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13294 2792..2953 -
1622924281.6998997-CDS-S-dermatodea_contig13294:3673..37841622924281.6998997-CDS-S-dermatodea_contig13294:3673..3784Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13294 3674..3784 -
1694079148.3405015-CDS-S-dermatodea_contig13294:3673..37841694079148.3405015-CDS-S-dermatodea_contig13294:3673..3784Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13294 3674..3784 -
1622924281.7094648-CDS-S-dermatodea_contig13294:4635..47761622924281.7094648-CDS-S-dermatodea_contig13294:4635..4776Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13294 4636..4776 -
1694079148.353559-CDS-S-dermatodea_contig13294:4635..47761694079148.353559-CDS-S-dermatodea_contig13294:4635..4776Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13294 4636..4776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13294.1958.1

>prot_S-dermatodea_contig13294.1958.1 ID=prot_S-dermatodea_contig13294.1958.1|Name=mRNA_S-dermatodea_contig13294.1958.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=331bp
QIVKLLVGVYGAEFAQPASNGSTPLHWAAARGNLAVVRIILGTFCAQMDV
KDEKGNTPCLIAARHGRIKTVELLLDRFKAKASSITAHDRKRTNLLHAAC
EMGHGELASMLIERYKMSVEDQDRKGLTPLARAAQRNQVGVFRLLVEKHG
ARLDTLTAKKSGLLHVACEAGAMDVTKVLMDEHGFEVDARNAAGDTPTLV
AAAGGHADILALLVDAHGASLDAADARGAGPLHKACERRRSGAASVLLES
YGLPADQTDPTGATPLHVTARGGDATLVELLTGPVGRADPGLRDGEGNQA
LHIAEACGHLGVVKVMVEKAGADLGEGVCV*
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mRNA from alignment at S-dermatodea_contig13294:874..4776-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13294.1958.1 ID=mRNA_S-dermatodea_contig13294.1958.1|Name=mRNA_S-dermatodea_contig13294.1958.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3903bp|location=Sequence derived from alignment at S-dermatodea_contig13294:874..4776- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATCGTCAAGCTGCTCGTGGGCGTGTATGGAGCGGAGTTTGCTCAGCC
CGCTAGCAACGGGTCTACGCCGCTTCACTGGGCTGCGGCCAGAGGCAACC
TGGCGGTCGTTCGGATTATCCTCGGAACCTTCTGTGCGCAGGTATGCTCG
GTACTGCTGTCTGTGTCCGTGCACAAGGCGAGTAATTTCTGCAAGAAGAT
CGCGATGATTTGGCTCCTGCCTGCAGCTTTGGATCGATCGTTTCCAAGCA
CAGCTGTAGTGGTCACACCTGTTAAGTTTGTTCGCCGGATAGATCTCTCT
CGCACGCGTTTTACGTACGTAGAGCCCCGCGTACATGAGGCTTGTAGAAG
GAAGCGGGCCATAGCCGTTGACCGTTCCGTCTGCTGCTGCACACACACGG
AAGCGATCAATCCGAGATTTCTGTTTTTCTCTGCGTCCAGGAGAAATCAA
CTCGGTGATGACGTGCCCGTTCGCTGTCCGTTGTCTGTGCTGTACCATTG
GAAAAAGGGGCCTTTTTCCAAAGTTCTGTACAATAGTTGAAGTCAGCACT
TGTTTTATCTGCACACAATAGAACGCAACCCGGAACGAGACTACAACAGA
AGTACGTATATATATAATATACATGATGGTATACGTACAGGCCCACCTCC
AACTCGCTTGGAAGCTCGCAAGCCCATGATGATCGAAAAAACACGAACGA
CGCGCTGCCCCCAAGCCCTGTCACGCCGCCGGTGGCCTCGAGAGCGCACG
ACCTCGACGTCAGGCGGGCGTTGCCTTTCGCGTTCGCACGTAGGCACTGG
CATAGGTCTCGATGCGCTGGGGAACCCTGTCAGGTTGTCGCGGCTGCTCG
AGGCAAGTAAAGCACGCCGCAGCAGCACAGCGCTGCCCTGATGGCGGTGC
TGCTAGTGCTGCTGCCGCTGCTATTGCTGCTCTGTAAAGTTGCAGACCGC
CCATTTAGCCGTGAGCTTTTCCTGCGTGATGGCTCCGTTCAGATGGACGT
AAAGGACGAGAAAGGAAACACCCCTTGCCTCATTGCCGCCCGCCACGGAC
GCATCAAGACGGTAGAGCTCCTGCTGGACCGCTTCAAGGCGAAGGCGAGT
TCCGTGCTTTGCTGTTTCAGCTTTTTTCAACCCCGCTATCATACTGCTGT
GTGTGTGTTTTCCGCACGGGTCGCGCTTTCTTTGCCTCTGAGAGGTCGAG
AGGCGTGTGTGTGTGAGCAATCTGCCGTAATGTTTGCGTCGTTTCCTTGC
GTCGTGTTTTTTTATGGTCGCGGCGGGCTCGTGGTTCGTGGCAGCACATG
TGTTTACAGAGCACCCGCTTTCGCGATACTCGTATATGCCGTATATAATG
CTAAAAAAGGATGCGGGTGGTTCTCAGGGTCTCGCGGGCTTGACTTGATT
ACAGCCTTACGCTATAGCCCACCTCTACGGCTTCTCACACGAGGTGGCGT
GTATAGGGAGGGACATGCGGCATACTTTCGCCGGCTAAGCAAAAAGAAAG
AGTCCGCGCGATTTGCGTCCAGTTTTAGCCCTGACCACCCAGAAGCGAGT
GGCTCTTCTGTGAGTCGCGCATACCCCGCCGGGCCAGCGCTAACTACTCA
GAAGCGAAATCGCTCTTGTGAGTCACCGCGTGCCGCGCCAAGCCCACGCT
TCTAATTTCCACGTTTTTGAGGCTAACGCCCGATTTGTGTAGAGGCGCCC
CGCGCGCCCGCTAGGGTATCGAGTAGCGGTACGTGGCCGACCACGCCCGT
CGCCGTTAACGCGAGCCACGACCTCTTCGCACGGCACATGGACAATTGTT
TTTTCTCCGTATTTTGTTTTCAGATAACGGCGCACGACAGGAAGAGAACA
AACCTTCTGCACGCGGCATGCGAGATGGGTCACGGGGAGCTGGCGAGTAT
GCTGATCGAACGGTATAAAATGAGCGTCGAAGATCAGGACCGCAAGGGCC
TGACTCCGCTCGCGAGGGCTGCTCAGCGGAATCAGGTGCGGTATTGCCTC
GTTTATTGCCTCGTTTTTTTTCATTTTTCCCGCTGTTGAGGTTCGCTTCT
GTACCCTGCCTGGTCGAGAGATGGGTTGGGCGGGGCAAAGTCGTCTCTGT
TTTATCCGCGGCGTTGTTGGATGGGCGGTGGGCGGTGCGGAGCATGATCG
CCGAGGGTGTGTGTTGGCGTACACACGCGCTTTCCGATTCTTCGCGAGCA
AGATGGCACGCACCGTGGTGCTGTGATGCTGTTGCTGCCGTGCCTACACA
CAAGCATAATGTCGGGCGTTCCTCTTGCGTGGCATGTTTGTTTCGATACC
GTGATCTATATGCTTCGGGTGGCGTAAAAAATTGCCGCGTCCGCGCGGTC
GTGCCTACAAGCTAACGCGCTCGTGGTGGTGGTGGTGGTGGTGGTGGTGG
TGGTGGGTGCTGCTGCTGCGCTGTTGGCTTCGAAGGTGGGCGTTTTTCGA
CTCCTGGTGGAGAAGCACGGCGCTCGATTAGACACGCTCACGGCGAAAAA
GAGCGGTTTGCTTCACGTAGCGTGCGAGGCCGGCGCGATGGACGTTACCA
AGGTGCTCATGGACGAACACGGGTGAGTTCTGTTTGGTTTTTTCAGGGGG
TGGATGATGAAATAAACAAGTACTGTTATACTGTTTACATCATAGGGGAC
GGACCGTTGGTACCCTTTTCTTAGCGCCATATGTTCTCACGATACGATGG
TTGAGCGTTTCAGTCCTCTCTCGCTTGAAGCTGATGGGGTCGGAGCAACC
CCAAAGAACCGGCGACAGGCGCCCTCCACCCACCGCGACCCGATACGCAG
CAATGCCGGGTGTTCGGGCTCCTAGCCTTGTGCGCGATTCGCCCTCGGCC
CCTCCCACACAAGCTTAACCGTTCCGTCCGCCACGCCAAACCGAACCCCT
CCCATTTATGCGCCCCTTCTTCCTGTGACTACAGCTTTTACCGGTACGTA
CTGTAACGACTCCAACGTATCAACGTCAGACCACCCCTCATCCTACCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCC
CCCCGCCCCCCCCGCGACCCNNNNNNNNNNTTTTTCTTCAGTTTTTCCCC
TTACCTTCTTTAAACACCCCCACCCTACAACGTCACCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCGCCCGGCGCCGCACCCCCAGACGCAGGCA
GTAGCCATACTGCGGTATCAGAAGTGGCCCGAAAACGCGAGACATGGAGT
AGATATCATAGGAAGAGGCACTTTTGGCCACCTTTGGCAAAGGGAGAAGA
AACGATTGCCCATCGGCGATTGATCGATCCTGTGGGAATCATGTTCCGTC
CTTCCGAGGATGCACACGCGTGGTCAATGGCCTAATAGAAAAGGCACGCG
AAGCTTGAGCACCGCCCCCCCCCCCCTCCCCCCCGCCACCGCCCCCACCC
CCTACGAACAGATTCGAGGTGGACGCTAGGAACGCCGCCGGCGACACGCC
GACTCTCGTGGCAGCCGCAGGGGGGCACGCCGACATCCTAGCCCTCCTCG
TGGACGCGCACGGCGCAAGTCTCGACGCCGCGGACGCCAGAGGCGCCGGT
CCGCTCCACAAGGCGTGCGAGCGCCGGCGCTCCGGCGCGGCCTCCGTCCT
CCTGGAGTCGTACGGGTTGCCCGCGGACCAGACGGATCCGACGGGCGCGA
CTCCCCTGCATGTGACCGCTCGGGGCGGCGACGCCACCCTCGTGGAACTC
CTGACGGGACCGGTGGGGCGGGCGGATCCCGGCTTGAGGGACGGGGAGGG
AAATCAGGCGCTTCATATTGCGGAGGCATGTGGACACCTGGGGGTGGTGA
AGGTCATGGTGGAGAAGGCCGGCGCGGATCTCGGTGAGGGTGTGTGTGTG
TGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13294:874..4776-

>mRNA_S-dermatodea_contig13294.1958.1 ID=mRNA_S-dermatodea_contig13294.1958.1|Name=mRNA_S-dermatodea_contig13294.1958.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at S-dermatodea_contig13294:874..4776- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATCGTCAAGCTGCTCGTGGGCGTGTATGGAGCGGAGTTTGCTCAGCC
CGCTAGCAACGGGTCTACGCCGCTTCACTGGGCTGCGGCCAGAGGCAACC
TGGCGGTCGTTCGGATTATCCTCGGAACCTTCTGTGCGCAGCAGATCGTC
AAGCTGCTCGTGGGCGTGTATGGAGCGGAGTTTGCTCAGCCCGCTAGCAA
CGGGTCTACGCCGCTTCACTGGGCTGCGGCCAGAGGCAACCTGGCGGTCG
TTCGGATTATCCTCGGAACCTTCTGTGCGCAGATGGACGTAAAGGACGAG
AAAGGAAACACCCCTTGCCTCATTGCCGCCCGCCACGGACGCATCAAGAC
GGTAGAGCTCCTGCTGGACCGCTTCAAGGCGAAGGCGAGTTCCATGGACG
TAAAGGACGAGAAAGGAAACACCCCTTGCCTCATTGCCGCCCGCCACGGA
CGCATCAAGACGGTAGAGCTCCTGCTGGACCGCTTCAAGGCGAAGGCGAG
TTCCATAACGGCGCACGACAGGAAGAGAACAAACCTTCTGCACGCGGCAT
GCGAGATGGGTCACGGGGAGCTGGCGAGTATGCTGATCGAACGGTATAAA
ATGAGCGTCGAAGATCAGGACCGCAAGGGCCTGACTCCGCTCGCGAGGGC
TGCTCAGCGGAATCAGATAACGGCGCACGACAGGAAGAGAACAAACCTTC
TGCACGCGGCATGCGAGATGGGTCACGGGGAGCTGGCGAGTATGCTGATC
GAACGGTATAAAATGAGCGTCGAAGATCAGGACCGCAAGGGCCTGACTCC
GCTCGCGAGGGCTGCTCAGCGGAATCAGGTGGGCGTTTTTCGACTCCTGG
TGGAGAAGCACGGCGCTCGATTAGACACGCTCACGGCGAAAAAGAGCGGT
TTGCTTCACGTAGCGTGCGAGGCCGGCGCGATGGACGTTACCAAGGTGCT
CATGGACGAACACGGGTGGGCGTTTTTCGACTCCTGGTGGAGAAGCACGG
CGCTCGATTAGACACGCTCACGGCGAAAAAGAGCGGTTTGCTTCACGTAG
CGTGCGAGGCCGGCGCGATGGACGTTACCAAGGTGCTCATGGACGAACAC
GGATTCGAGGTGGACGCTAGGAACGCCGCCGGCGACACGCCGACTCTCGT
GGCAGCCGCAGGGGGGCACGCCGACATCCTAGCCCTCCTCGTGGACGCGC
ACGGCGCAAGTCTCGACGCCGCGGACGCCAGAGGCGCCGGTCCGCTCCAC
AAGGCGTGCGAGCGCCGGCGCTCCGGCGCGGCCTCCGTCCTCCTGGAGTC
GTACGGGTTGCCCGCGGACCAGACGGATCCGACGGGCGCGACTCCCCTGC
ATGTGACCGCTCGGGGCGGCGACGCCACCCTCGTGGAACTCCTGACGGGA
CCGGTGGGGCGGGCGGATCCCGGCTTGAGGGACGGGGAGGGAAATCAGGC
GCTTCATATTGCGGAGGCATGTGGACACCTGGGGGTGGTGAAGGTCATGG
TGGAGAAGGCCGGCGCGGATCTCGGTGAGGGTGTGTGTGTGTGAATTCGA
GGTGGACGCTAGGAACGCCGCCGGCGACACGCCGACTCTCGTGGCAGCCG
CAGGGGGGCACGCCGACATCCTAGCCCTCCTCGTGGACGCGCACGGCGCA
AGTCTCGACGCCGCGGACGCCAGAGGCGCCGGTCCGCTCCACAAGGCGTG
CGAGCGCCGGCGCTCCGGCGCGGCCTCCGTCCTCCTGGAGTCGTACGGGT
TGCCCGCGGACCAGACGGATCCGACGGGCGCGACTCCCCTGCATGTGACC
GCTCGGGGCGGCGACGCCACCCTCGTGGAACTCCTGACGGGACCGGTGGG
GCGGGCGGATCCCGGCTTGAGGGACGGGGAGGGAAATCAGGCGCTTCATA
TTGCGGAGGCATGTGGACACCTGGGGGTGGTGAAGGTCATGGTGGAGAAG
GCCGGCGCGGATCTCGGTGAGGGTGTGTGTGTGTGA
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