mRNA_S-dermatodea_contig13290.1955.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13290.1955.1
Unique NamemRNA_S-dermatodea_contig13290.1955.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13290.1955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13290contigS-dermatodea_contig13290:4494..4854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-03_003160.2
Hectar predicted targeting categoryother localisation
Exons1
Model size362
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.4340143-CDS-S-dermatodea_contig13290:4493..48531622924281.4340143-CDS-S-dermatodea_contig13290:4493..4853Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13290 4494..4853 +
1694079148.1762974-CDS-S-dermatodea_contig13290:4493..48531694079148.1762974-CDS-S-dermatodea_contig13290:4493..4853Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13290 4494..4853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13290.1955.1prot_S-dermatodea_contig13290.1955.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13290 4494..4853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13290.1955.1

>prot_S-dermatodea_contig13290.1955.1 ID=prot_S-dermatodea_contig13290.1955.1|Name=mRNA_S-dermatodea_contig13290.1955.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
HRHRCSRTGAAAMSLFSISRDQRLSRWDLVETLAPPRMPTGEKKRADSSN
NNASTGADEDDGLVVGAPGVKVEISSTPDSREEQCATAAAPAESPARSNS
VRRAGTSRRGGDDPNGAWRR
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mRNA from alignment at S-dermatodea_contig13290:4494..4854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13290.1955.1 ID=mRNA_S-dermatodea_contig13290.1955.1|Name=mRNA_S-dermatodea_contig13290.1955.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=361bp|location=Sequence derived from alignment at S-dermatodea_contig13290:4494..4854+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CATCGTCACCGCTGTTCGCGTACAGGAGCAGCAGCTATGTCGTTGTTCAG
CATCTCCCGCGACCAAAGGCTGTCGCGGTGGGATCTGGTGGAAACCTTAG
CGCCGCCACGCATGCCGACGGGAGAAAAAAAACGCGCAGATAGCAGTAAC
AATAACGCTTCCACCGGTGCAGATGAAGACGACGGTCTCGTCGTCGGTGC
GCCAGGAGTCAAGGTCGAAATTTCGTCCACGCCCGATAGCCGGGAGGAGC
AGTGCGCCACCGCCGCTGCACCCGCCGAATCACCCGCCCGTTCCAACTCG
GTCCGAAGGGCAGGAACATCTCGACGAGGTGGGGACGACCCGAACGGCGC
GTGGAGGCGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig13290:4494..4854+

>mRNA_S-dermatodea_contig13290.1955.1 ID=mRNA_S-dermatodea_contig13290.1955.1|Name=mRNA_S-dermatodea_contig13290.1955.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig13290:4494..4854+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CATCGTCACCGCTGTTCGCGTACAGGAGCAGCAGCTATGTCGTTGTTCAG
CATCTCCCGCGACCAAAGGCTGTCGCGGTGGGATCTGGTGGAAACCTTAG
CGCCGCCACGCATGCCGACGGGAGAAAAAAAACGCGCAGATAGCAGTAAC
AATAACGCTTCCACCGGTGCAGATGAAGACGACGGTCTCGTCGTCGGTGC
GCCAGGAGTCAAGGTCGAAATTTCGTCCACGCCCGATAGCCGGGAGGAGC
AGTGCGCCACCGCCGCTGCACCCGCCGAATCACCCGCCCGTTCCAACTCG
GTCCGAAGGGCAGGAACATCTCGACGAGGTGGGGACGACCCGAACGGCGC
GTGGAGGCGGCATCGTCACCGCTGTTCGCGTACAGGAGCAGCAGCTATGT
CGTTGTTCAGCATCTCCCGCGACCAAAGGCTGTCGCGGTGGGATCTGGTG
GAAACCTTAGCGCCGCCACGCATGCCGACGGGAGAAAAAAAACGCGCAGA
TAGCAGTAACAATAACGCTTCCACCGGTGCAGATGAAGACGACGGTCTCG
TCGTCGGTGCGCCAGGAGTCAAGGTCGAAATTTCGTCCACGCCCGATAGC
CGGGAGGAGCAGTGCGCCACCGCCGCTGCACCCGCCGAATCACCCGCCCG
TTCCAACTCGGTCCGAAGGGCAGGAACATCTCGACGAGGTGGGGACGACC
CGAACGGCGCGTGGAGGCGG
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