mRNA_S-dermatodea_contig13290.1954.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13290.1954.1
Unique NamemRNA_S-dermatodea_contig13290.1954.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13290.1954.1 vs. uniprot
Match: D7FVQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ9_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 5.470e-16
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   22 ARLPPFPGIAPVLEYRAHQMGVLCVAVDVPA-DGGRFLIVTGGDDQAICIAEVEVVD 189
            A  PP   + PVLEYRAHQMGVLC+AV VPA + GR ++VTGGDDQAIC+AE+EV +
Sbjct:   88 AAAPPCHALVPVLEYRAHQMGVLCMAVHVPAGERGRVVVVTGGDDQAICVAELEVAE 144
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BLAST of mRNA_S-dermatodea_contig13290.1954.1 vs. uniprot
Match: A0A6H5KMH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.450e-14
Identity = 52/100 (52.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:   79 MGVLCVAVDVPA-DGGRFLIVTGGDDQAICIAEVEVV---------DRTREASDAERCQAEETRDDLGRGEG-APARSRAFTVRIAGGSPETIDGAAGSA 345
            MGVLC+AV VPA + GR +IVTGGDDQAIC+AE+EVV           TR ASD     ++ +R   G+G G  PAR R   VR+  GSP+  +GAAGSA
Sbjct:    1 MGVLCMAVHVPAGEAGRVVIVTGGDDQAICVAELEVVVVLDDGRCSPTTRIASDRGPSSSQGSR---GQGGGEVPARERRSAVRLVAGSPQVFEGAAGSA 97
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13290.1954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVQ9_ECTSI5.470e-1666.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMH9_9PHAE5.450e-1452.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13290contigS-dermatodea_contig13290:2358..4352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-03_003160.1
Hectar predicted targeting categoryother localisation
Exons3
Model size345
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13290.1954.1prot_S-dermatodea_contig13290.1954.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13290 2358..4352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.502444-CDS-S-dermatodea_contig13290:2357..24351622924281.502444-CDS-S-dermatodea_contig13290:2357..2435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13290 2358..2435 +
1694079148.1873722-CDS-S-dermatodea_contig13290:2357..24351694079148.1873722-CDS-S-dermatodea_contig13290:2357..2435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13290 2358..2435 +
1622924281.5134697-CDS-S-dermatodea_contig13290:3422..36251622924281.5134697-CDS-S-dermatodea_contig13290:3422..3625Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13290 3423..3625 +
1694079148.1976264-CDS-S-dermatodea_contig13290:3422..36251694079148.1976264-CDS-S-dermatodea_contig13290:3422..3625Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13290 3423..3625 +
1622924281.5233347-CDS-S-dermatodea_contig13290:4288..43521622924281.5233347-CDS-S-dermatodea_contig13290:4288..4352Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13290 4289..4352 +
1694079148.206735-CDS-S-dermatodea_contig13290:4288..43521694079148.206735-CDS-S-dermatodea_contig13290:4288..4352Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13290 4289..4352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13290.1954.1

>prot_S-dermatodea_contig13290.1954.1 ID=prot_S-dermatodea_contig13290.1954.1|Name=mRNA_S-dermatodea_contig13290.1954.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=115bp
MDGDKAPARLPPFPGIAPVLEYRAHQMGVLCVAVDVPADGGRFLIVTGGD
DQAICIAEVEVVDRTREASDAERCQAEETRDDLGRGEGAPARSRAFTVRI
AGGSPETIDGAAGSA
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mRNA from alignment at S-dermatodea_contig13290:2358..4352+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13290.1954.1 ID=mRNA_S-dermatodea_contig13290.1954.1|Name=mRNA_S-dermatodea_contig13290.1954.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1995bp|location=Sequence derived from alignment at S-dermatodea_contig13290:2358..4352+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATGGGGACAAGGCGCCCGCGCGGTTGCCGCCTTTTCCGGGAATTGC
TCCCGTTCTGGAGTACCGTGCGCATCAGGTGCGGTAGTGGCGGTGCCTGG
GCCCCTACCTGCTTGCGCGGATCGAGTTTTCTTTCTTTTTTTCTTACAAG
TAACAGTTGTAGATCAGAGTGTAAGTAATCGGTGAGCTGCGGGAGTGCCG
AACCCAATGCGCTCGCGATAAAAACCTTAGGCAAGGATGGGGGATAAGAT
AAGAGAGATGGGATGATCCCTTGTGACCACAGGCGGATCTCGGAAAAGCC
GGTCTAACATTTGTGTGAACAAAGGAAAAACCAGTTCACACGCGCATCCC
TAACTCACAGAAACACTTAGTTCTATTCCAGGGGTTTAAACCTACCGTAG
ATACGTCCTGTACATCATGTTGGGGGATACGCTTAACAAAACAACAGGTG
CTGTATTATTGCAAGGGATCCGGTCAAGCGCAAGCATTGGTTTGGCAATG
GAATGTGTTTAGCGAAGTTTGTTTGCCACAGCGGGAACCGGCACACAGCT
TTGCGACGTCAACGTTGTGCCCTAAGGTGTGCGGACGGGGTGAAAAAGTG
AAAAAACCGCAGAGGCCTTGGCGCAGGGGGGTGTGGGCGTACCGGATGCT
GTCTTTTTTTGTCTGCTTGGGGTATTGCTGTGTTTTGGCGGCGTTTCTAT
GTTATGTGTTCGAATTTTGTCAAACGTAGTTGTACATATCATCGGCAGAC
ATTGTCGGACTGCAGCGCCGCTCATCACCTCGACGCTCAGGGGAGATCGG
GCAGATGGGCTGTGTCATGGCAGCGTTTGCAAGCGCTTTGTGCAATTCGA
ATTGTTGTTAAACGTAGCACCATCGGGAGTCATTATCTTGACCAATTTCA
GTAGTGTAGTGTATGAGGACGCTCCCGAAGCGAACACTTAGGATTTACAG
GTGAATGTTAACACATACGAGGACATAAGAGAAGAATTCGTTTTTCTAAA
TGTTTGAGCTTTTGCAGCAACACTCGCCCCCTAAACGAACCTCGCGCTTT
CCGACGATCGCGCAGATGGGCGTCCTCTGCGTGGCCGTTGACGTGCCAGC
GGACGGGGGGCGGTTTTTAATCGTCACGGGAGGTGACGACCAGGCGATCT
GTATCGCGGAAGTGGAGGTGGTCGACCGCACGAGAGAGGCAAGCGACGCC
GAGCGTTGTCAGGCAGAGGAAACCCGGGACGACCTTGGACGGGGCGAGGG
AGCGCCTGCGAGGAGTAGGTACGCGATTAGAGCTAGGCCTTCTCGCGGTA
GGATCAACTGCTTTCAAGTTCGGTGTTTTGTGTGTCTGACTGAGTCGGGT
CGAACTTAGACGATCGGCTGGAATCGTTGTAACAAAAAAAAACATACATC
GATTGATCAGTGCGGTAGGGAAGCCTTGTTCGAGAGTGGGCGCGTGTCGT
CTCAGATGCGACTCTCGTTGCCTGAAATTGAATGTAGTATGTAATGCAAT
CCGCTGGTAGAGCAAAAAACCAAACGCAGTACGTCTGCGGTGGACCGCAG
TTATTTTATTTTGTGTTTGTCGAGACACGCTCTTGCGACTTGGTCGTCAT
CAGAACCAAACCCGACGCAGTACATACAGCGGAGGTGAATAGTAATCAAG
ACGAACTTCTGCTGAATAGCGAATTCAAAATTAAACGGCTTTTACGTTTT
TTTTTTTCTGTTTTTGAGGCAATACGAAAGCCAATTTTCGGCAAAAAACA
CTTCCTGTGCGCCGCGGCTGTCTAAAAAAACAAACGAAGAAAACCGCCCT
CGATATAAACTGCCCTAAGCGAAGTGCACCTTGCTTGGCACCGAGAGGTT
GCTGTAGACTCCGCTTCTATCACGTCACCCATTACCCCGCCATTCCTACC
CCCACCCCCCCCCTCCCCGCCGCGTACCCAGAGCGTTCACGGTTCGGATC
GCGGGGGGGTCGCCGGAGACAATAGACGGGGCGGCCGGATCAGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13290:2358..4352+

>mRNA_S-dermatodea_contig13290.1954.1 ID=mRNA_S-dermatodea_contig13290.1954.1|Name=mRNA_S-dermatodea_contig13290.1954.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at S-dermatodea_contig13290:2358..4352+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATGGGGACAAGGCGCCCGCGCGGTTGCCGCCTTTTCCGGGAATTGC
TCCCGTTCTGGAGTACCGTGCGCATCAGATGGATGGGGACAAGGCGCCCG
CGCGGTTGCCGCCTTTTCCGGGAATTGCTCCCGTTCTGGAGTACCGTGCG
CATCAGATGGGCGTCCTCTGCGTGGCCGTTGACGTGCCAGCGGACGGGGG
GCGGTTTTTAATCGTCACGGGAGGTGACGACCAGGCGATCTGTATCGCGG
AAGTGGAGGTGGTCGACCGCACGAGAGAGGCAAGCGACGCCGAGCGTTGT
CAGGCAGAGGAAACCCGGGACGACCTTGGACGGGGCGAGGGAGCGCCTGC
GAGGAGTAGATGGGCGTCCTCTGCGTGGCCGTTGACGTGCCAGCGGACGG
GGGGCGGTTTTTAATCGTCACGGGAGGTGACGACCAGGCGATCTGTATCG
CGGAAGTGGAGGTGGTCGACCGCACGAGAGAGGCAAGCGACGCCGAGCGT
TGTCAGGCAGAGGAAACCCGGGACGACCTTGGACGGGGCGAGGGAGCGCC
TGCGAGGAGTAGAGCGTTCACGGTTCGGATCGCGGGGGGGTCGCCGGAGA
CAATAGACGGGGCGGCCGGATCAGCGAGCGTTCACGGTTCGGATCGCGGG
GGGGTCGCCGGAGACAATAGACGGGGCGGCCGGATCAGCG
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