mRNA_S-dermatodea_contig13290.1953.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13290.1953.1
Unique NamemRNA_S-dermatodea_contig13290.1953.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13290.1953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13290contigS-dermatodea_contig13290:465..1834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size537
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13290.1953.1prot_S-dermatodea_contig13290.1953.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13290 684..1834 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.3780084-UTR-S-dermatodea_contig13290:464..6831622924281.3780084-UTR-S-dermatodea_contig13290:464..683Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13290 465..683 +
1694079148.143369-UTR-S-dermatodea_contig13290:464..6831694079148.143369-UTR-S-dermatodea_contig13290:464..683Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13290 465..683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.389683-CDS-S-dermatodea_contig13290:683..7361622924281.389683-CDS-S-dermatodea_contig13290:683..736Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13290 684..736 +
1694079148.1530707-CDS-S-dermatodea_contig13290:683..7361694079148.1530707-CDS-S-dermatodea_contig13290:683..736Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13290 684..736 +
1622924281.4000638-CDS-S-dermatodea_contig13290:1569..18341622924281.4000638-CDS-S-dermatodea_contig13290:1569..1834Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13290 1570..1834 +
1694079148.1628664-CDS-S-dermatodea_contig13290:1569..18341694079148.1628664-CDS-S-dermatodea_contig13290:1569..1834Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13290 1570..1834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13290.1953.1

>prot_S-dermatodea_contig13290.1953.1 ID=prot_S-dermatodea_contig13290.1953.1|Name=mRNA_S-dermatodea_contig13290.1953.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
MGVNVGGRLQKMSLAHRRSWAPFHHPDSEVASPRASDNVLVRATRIGDPG
RGHGCRRGKRRFGGRRLRRRGNHFSAPAWKRRPRWCRSKRAPIAGCREVD
GLGGTT
back to top

mRNA from alignment at S-dermatodea_contig13290:465..1834+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13290.1953.1 ID=mRNA_S-dermatodea_contig13290.1953.1|Name=mRNA_S-dermatodea_contig13290.1953.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1370bp|location=Sequence derived from alignment at S-dermatodea_contig13290:465..1834+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CATTCCCCCCTAAAGGTCCCCAGCCACGCCACCCGTTCTGCCACCCCTAC
ACGACGGTAGCTCAAACGCTCCCGTCGCACGAGTCGTCTGTGGGCGCGGT
CGCAGTCGGAATTTGTGCAAAACATTCCTGTCCAGGTCGTGATATACGAG
CGGTGATTGTTTCCGGGGGCGGGAAAATGGAGCTTCGGGCTTGGGGCTTC
GCGGGCCCGGATAGGGGCGATGGGGGTGAACGTGGGAGGAAGGCTACAGA
AGATGTCGCTGGCGCACCGCCGGTAAGTGATGTCCTGGATTTTTCTGTTT
CGCCGCACGTGTTGATGGATGGTGCGGCGCGAAATTGATGTCGTTTCCAC
CGCACTTTATACGGACACATGAGGCTTTTTTTTACAGATGTTCTTGCTTT
GGTTCAGGCAGGCGGTTGTTTTAGTCCCAGTATTACGTCGTGGTAAACCT
TGCTCTGTCCTGAACGGGAACTTTGTTTTTTTCAGTGGCAACGGTTAAGA
GATAAGGGGTCGTAAAATGTTGCGACGTTTTTTTGTTTTTGTTTTTGTTT
TCCCAAGCGTTGTGCTACAGTAGTTGGCCGTGCCACTCAGCGGCGCTACA
GTACATAGTTCCGTCCAGGCACTCGCAAAGCCAAAATTTCGAGAAATCCA
ATCAAACAAATTTCGATGCGCCTCGCCTAGATAATGCTGAATTGCACGTC
GAGACACAAACAAACGCAAACGTAAAAAAATTGAACAATCACGATCAAAT
GTTTTTGATGCGCATCGCCTGCAACTTATTCTATCGCAGCCAGGGGCAGG
GACACGCCTTGGCAACGTTAATCTTACTCTCCTCTAAAAGAACAACAAAA
GTCGCTATAACCTTCCCACCCTCCCCCTGGGGGATAAGAAGTCGCCTGAG
AAGGCGAGAAGTGATGTAGACAGCATATGAAAAACAATTTTGGGTCACGT
TTGGCAGAGTAAAAAGGCACGATTGGCCATCGGCGGTCGATCGATCCTGT
GGGAACACTGATACGTTAGCTAGAGAACGCGTGATCAGTGATCTAACAGC
TAAGGCATGCAAAACATGAGTACCCCCCCCCCCCCCCCGCCCCTCCCCTG
TCCAGTTCCTGGGCTCCCTTCCACCACCCCGACTCCGAAGTCGCCTCTCC
ACGCGCATCGGATAATGTGCTTGTGCGTGCTACCCGCATTGGCGATCCCG
GCCGCGGACACGGTTGCCGACGCGGAAAGCGCCGTTTTGGCGGCCGGAGA
CTCAGGCGGCGGGGTAACCATTTTTCAGCTCCGGCATGGAAGCGGAGACC
CCGGTGGTGCAGGTCGAAGCGAGCCCCGATCGCGGGTTGCCGGGAGGTGG
ATGGCCTCGGGGGAACGACC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13290:465..1834+

>mRNA_S-dermatodea_contig13290.1953.1 ID=mRNA_S-dermatodea_contig13290.1953.1|Name=mRNA_S-dermatodea_contig13290.1953.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig13290:465..1834+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGGTGAACGTGGGAGGAAGGCTACAGAAGATGTCGCTGGCGCACCG
CCGATGGGGGTGAACGTGGGAGGAAGGCTACAGAAGATGTCGCTGGCGCA
CCGCCGTTCCTGGGCTCCCTTCCACCACCCCGACTCCGAAGTCGCCTCTC
CACGCGCATCGGATAATGTGCTTGTGCGTGCTACCCGCATTGGCGATCCC
GGCCGCGGACACGGTTGCCGACGCGGAAAGCGCCGTTTTGGCGGCCGGAG
ACTCAGGCGGCGGGGTAACCATTTTTCAGCTCCGGCATGGAAGCGGAGAC
CCCGGTGGTGCAGGTCGAAGCGAGCCCCGATCGCGGGTTGCCGGGAGGTG
GATGGCCTCGGGGGAACGACCTTCCTGGGCTCCCTTCCACCACCCCGACT
CCGAAGTCGCCTCTCCACGCGCATCGGATAATGTGCTTGTGCGTGCTACC
CGCATTGGCGATCCCGGCCGCGGACACGGTTGCCGACGCGGAAAGCGCCG
TTTTGGCGGCCGGAGACTCAGGCGGCGGGGTAACCATTTTTCAGCTCCGG
CATGGAAGCGGAGACCCCGGTGGTGCAGGTCGAAGCGAGCCCCGATCGCG
GGTTGCCGGGAGGTGGATGGCCTCGGGGGAACGACC
back to top