mRNA_S-dermatodea_contig13287.1949.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13287.1949.1
Unique NamemRNA_S-dermatodea_contig13287.1949.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13287.1949.1 vs. uniprot
Match: A0A6H5JDL7_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL7_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 4.550e-82
Identity = 329/614 (53.58%), Postives = 356/614 (57.98%), Query Frame = 1 
Query:    1 HRRSELTLRACSCVKQYLRCSLALAVLRQVQRSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKASPRPAGRAAWQCKPLAVDDAAHAANVAAVKGAGL--GSGEGRQATGGLGLGWVAGAGXXXXXXXXXXXXXXXXAGRGRGGVAVRLGMHWAPAVQLMHHRGVQALINVVDAMLSQRTMGADTALYALDALGTAALCPLVYPELCRPGTNNSTEGGAQSSSTSALSHT---AASTSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXGWALPHNRLGVEVLLEAAGGVRQRDTGAVMCAALKVLETCCRPHKACGPPVQSVAGSAAGGAMMASSSAPGLSTAAXXXXXXXXXXXXAFGHRSG----------------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYATRXXXXXXXXXXXXXXXXKXXGEGERSVDDRLQRPMRKLIRERNGIRVLVGLLRYRRQAAAADAVRLRAALCLLGLAHDVQIAQVLEKMRITTTLSDTVRAGPVVNR 1761
            HRR+++TL AC CV+QYLRCSLALAVL+Q    GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                              R  GR AWQCKPLAVDDA+HAANVAAVKG G   G GEGR A G                             R R  V VRLGM W+PAVQLMHHRG+QALINVVDAMLSQRT GA+  +YALDALGTAALCPLVYPE CR G N+    G +SSST A   +   AA + P           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                      ALP NRLGV+VLL+AA GVRQ+D G VMCAAL VL+ CCRPHK CGP +Q    +++  A     +A G STA XXXXXXXXXXXX                             G                                                 XXX                G G+  VDDRLQRPMRKLIRE NG+RVLVGLLRYRRQ  AADAVRLRAA+CLLGLAHDV IAQ+LEKMRIT TLSDTVRAGPVV R
Sbjct:  700 HRRTQVTLGACGCVRQYLRCSLALAVLKQ---RGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVTPPSPSLS--------------------RAPGRQAWQCKPLAVDDASHAANVAAVKGQGGLGGGGEGRTAAG----------------------------VRDREAVTVRLGMQWSPAVQLMHHRGMQALINVVDAMLSQRT-GAEAVVYALDALGTAALCPLVYPEFCRAGPNSPAGDGERSSSTPARDGSDGEAARSQPPLPPQPGGGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------ALPRNRLGVDVLLDAAAGVRQKDPG-VMCAALDVLDRCCRPHKGCGPLIQPGTATSSFAA-----TAGGDSTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGTADGCGGVVGAEFKRPSASGDPAVAIGYRNNLRLVSGGRSSPRGXXXXXXXVTFAAGSRRDGSGSAQGSGDCVVDDRLQRPMRKLIRESNGLRVLVGLLRYRRQVVAADAVRLRAAMCLLGLAHDVHIAQMLEKMRITATLSDTVRAGPVVGR 1233
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BLAST of mRNA_S-dermatodea_contig13287.1949.1 vs. uniprot
Match: D7FHI0_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI0_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 1.130e-78
Identity = 341/612 (55.72%), Postives = 367/612 (59.97%), Query Frame = 1 
Query:    1 HRRSELTLRACSCVKQYLRCSLALAVLRQ--VQRSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKASPRPAGRAAWQCKPLAVDDAAHAANVAAVKGAGLGSGEGRQATGGLGLGWVAGAGXXXXXXXXXXXXXXXXAG-RGRGGVAVRLGMHWAPAVQLMHHRGVQALINVVDAMLSQRTMGADTALYALDALGTAALCPLVYPELCRPGTNNSTEGGAQSSSTSALSHTAASTSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXGWALPHNRLGVEVLLEAAGGVRQRDTGAVMCAALKVLETCCRPHKACGPPVQ---SVAGSAAGGAMMASSSAPG-----------------LSTAAXXXXXXXXXXXXAFGHRSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYATRXXXXXXXXXXXXXXXXKXXGEG--ERSVDDRLQRPMRKLIRERNGIRVLVGLLRYRRQAAAADAVRLRAALCLLGLAHDVQIAQVLEKMRITTTLSDTVRAGPVVNR 1761
            HRR+++TL AC CV+QYLRCSLALAVL+Q  V  +GG  XXXXXXXXXXXXXXXXXXXXXXXXXXXX                                   R  GR AWQCKPLAVDDA+HAANVAAVKG            GGLG GW                     AG R R  V VRLGMHW+PAVQLMHHRG+QALINVVD MLSQR MGA+T +YALDALGTA LCPLVYPE CR G N+   G                   XXXXXXXXXXXXXXXXXXXXXXXX                XXXXXXXXXX XXXXXX     XXXXXXX  ALP NRLGV+VLL+AA GVRQ+D G VMCAAL VL+ CCRPHK CGP +Q   + +  AA     ++++ PG                 L    XXXXXXXXXXXX      GG                                            X    XXXXXXXXXXXXXXXX XX     +R VDDRLQRPMRKLIRE NG+RVLVGLLRYRRQ  AADAVRLRAALCLLGLAHDV IAQ+LEKMRITTTLSDTVRAGPVV R
Sbjct:  649 HRRTQVTLGACGCVRQYLRCSLALAVLKQRGVSAAGGHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVTPPSPSLS-------------------------RAPGRPAWQCKPLAVDDASHAANVAAVKG-----------QGGLGGGWEG----------------RTAAGVRDREAVTVRLGMHWSPAVQLMHHRGMQALINVVDDMLSQR-MGAETVVYALDALGTAVLCPLVYPEFCRAGPNSPAGGXXX-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLQPRGGRASSGGEGRXXXXXXXXXXXXXXXXXEGDEGXXXXXXXXGALPRNRLGVDVLLDAAAGVRQKDPG-VMCAALNVLDRCCRPHKGCGPLIQPGTATSSFAATDGGDSTATQPGXXXXXXXXXXXXXXXRPLHAXXXXXXXXXXXXXXXXXXXRGGTADGRGGDVGAEVKRPSASGDPTAAAGHRDNLRLASGGRSTPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRVVDDRLQRPMRKLIRESNGLRVLVGLLRYRRQVVAADAVRLRAALCLLGLAHDVHIAQMLEKMRITTTLSDTVRAGPVVGR 1195
[Close]
BLAST of mRNA_S-dermatodea_contig13287.1949.1 vs. uniprot
Match: A0A5D6YBX6_9STRA (LisH domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBX6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.720e-13
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 1 
Query: 1516 RSVDDRLQRPMRKLIRERNGIRVLVGLLRYRRQAAAADAVRLRAALCLLGLAHDVQIAQVLEKMRITTTLSDTVRAGPVV 1755
            RS DD++ RP+RKL RERN I+V V LLRY+R    ADA+RL A   LLGL+ D QIAQ+LEKM+I   LSD +R  P++
Sbjct:  780 RSKDDKMLRPVRKLARERNAIKVCVQLLRYKRSVQNADAIRLLATRALLGLSRDKQIAQILEKMQIGQLLSDLIRNEPIL 859
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BLAST of mRNA_S-dermatodea_contig13287.1949.1 vs. uniprot
Match: A0A8J5IYG7_9STRA (LisH domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IYG7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 9.530e-12
Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 1 
Query: 1516 RSVDDRLQRPMRKLIRERNGIRVLVGLLRYRRQAAAADAVRLRAALCLLGLAHDVQIAQVLEKMRITTTLSDTVRAGPVV 1755
            ++ DD++ RP+RKL RERN I+V V LLRY+R    ADA+RL A   LLGL+ D  I+Q+LEKM++   LSD +R+ PV+
Sbjct:  633 KAKDDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLATRALLGLSRDRHISQILEKMQVGQLLSDMIRSDPVL 712
[Close]
BLAST of mRNA_S-dermatodea_contig13287.1949.1 vs. uniprot
Match: G5A448_PHYSP (LisH domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A448_PHYSP)

HSP 1 Score: 79.7 bits (195), Expect = 1.010e-11
Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 1 
Query: 1516 RSVDDRLQRPMRKLIRERNGIRVLVGLLRYRRQAAAADAVRLRAALCLLGLAHDVQIAQVLEKMRITTTLSDTVRAGPVV 1755
            ++ DD++ RP+RKL RERN I+V V LLRY+R    ADA+RL A   LLGL+ D  I+Q+LEKM++   LSD +R+ PV+
Sbjct:  787 KAKDDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLATRALLGLSRDRHISQILEKMQVGQLLSDMIRSDPVL 866
[Close]
BLAST of mRNA_S-dermatodea_contig13287.1949.1 vs. uniprot
Match: A0A425C4X6_9STRA (LisH domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425C4X6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.730e-11
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1 
Query: 1516 RSVDDRLQRPMRKLIRERNGIRVLVGLLRYRRQAAAADAVRLRAALCLLGLAHDVQIAQVLEKMRITTTLSDTVRAGPVV 1755
            ++ DD++ RP+RKL RERN I+V V LLRY+R    ADA+RL +   LLGL+ D  I+Q+LEKM++   LSD +R+ PV+
Sbjct:  489 KAKDDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLSTRALLGLSRDRHISQILEKMQVGQLLSDMIRSDPVL 568
[Close]
BLAST of mRNA_S-dermatodea_contig13287.1949.1 vs. uniprot
Match: A0A484EBA6_BRELC (LisH domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBA6_BRELC)

HSP 1 Score: 79.0 bits (193), Expect = 1.770e-11
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1 
Query: 1516 RSVDDRLQRPMRKLIRERNGIRVLVGLLRYRRQAAAADAVRLRAALCLLGLAHDVQIAQVLEKMRITTTLSDTVRAGPVV 1755
            ++ DD++ RP+RKL RERN I+V V LLRY+R    ADA+RL A   LLGL+ D  I+Q++EKM++   LSD +R+ PV+
Sbjct:  782 KAKDDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLATRALLGLSRDRHISQIIEKMQVGQLLSDMIRSDPVL 861
[Close]
BLAST of mRNA_S-dermatodea_contig13287.1949.1 vs. uniprot
Match: A0A662Y0Y0_9STRA (LisH domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0Y0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.780e-11
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 1 
Query: 1516 RSVDDRLQRPMRKLIRERNGIRVLVGLLRYRRQAAAADAVRLRAALCLLGLAHDVQIAQVLEKMRITTTLSDTVRAGPVV 1755
            ++ DD++ RP+RKL RERN I+V V LLRY+R    ADA+RL A   LLGL+ D  I+Q+LEKM+I   LSD +R  PV+
Sbjct:  778 KAKDDKVLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLATRALLGLSRDRHISQILEKMQIGQLLSDMIRTEPVL 857
[Close]
BLAST of mRNA_S-dermatodea_contig13287.1949.1 vs. uniprot
Match: A0A0P1AL32_PLAHL (HIV-1 Vpr-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AL32_PLAHL)

HSP 1 Score: 78.6 bits (192), Expect = 2.200e-11
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1 
Query: 1516 RSVDDRLQRPMRKLIRERNGIRVLVGLLRYRRQAAAADAVRLRAALCLLGLAHDVQIAQVLEKMRITTTLSDTVRAGPVV 1755
            ++ DD++ RP+RKL RERN I+V V LLRY+R    ADA+RL A   LLGL+ D  I+Q++EKM++   LSD +R+ PV+
Sbjct:  778 KAKDDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLATRSLLGLSRDRHISQIIEKMQVGQLLSDMIRSDPVL 857
[Close]
BLAST of mRNA_S-dermatodea_contig13287.1949.1 vs. uniprot
Match: A0A3M6VCW5_9STRA (LisH domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCW5_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.340e-11
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1 
Query: 1516 RSVDDRLQRPMRKLIRERNGIRVLVGLLRYRRQAAAADAVRLRAALCLLGLAHDVQIAQVLEKMRITTTLSDTVRAGPVV 1755
            ++ DD++ RP+RKL RERN I+V V LLRY+R    ADA+RL +   LLGL+ D  I+Q+LEKM++   LSD +R+ PV+
Sbjct:  776 KAKDDKMLRPVRKLARERNAIKVCVYLLRYKRSVQNADAIRLLSTRALLGLSRDRHISQILEKMQVGQLLSDMIRSDPVL 855
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13287.1949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JDL7_9PHAE4.550e-8253.58LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FHI0_ECTSI1.130e-7855.72LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A5D6YBX6_9STRA3.720e-1357.50LisH domain-containing protein n=1 Tax=Pythium bra... [more]
A0A8J5IYG7_9STRA9.530e-1252.50LisH domain-containing protein n=1 Tax=Phytophthor... [more]
G5A448_PHYSP1.010e-1152.50LisH domain-containing protein n=1 Tax=Phytophthor... [more]
A0A425C4X6_9STRA1.730e-1151.25LisH domain-containing protein n=1 Tax=Peronospora... [more]
A0A484EBA6_BRELC1.770e-1151.25LisH domain-containing protein n=1 Tax=Bremia lact... [more]
A0A662Y0Y0_9STRA1.780e-1153.75LisH domain-containing protein n=2 Tax=Nothophytop... [more]
A0A0P1AL32_PLAHL2.200e-1151.25HIV-1 Vpr-binding protein n=1 Tax=Plasmopara halst... [more]
A0A3M6VCW5_9STRA2.340e-1151.25LisH domain-containing protein n=2 Tax=Peronospora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13287contigS-dermatodea_contig13287:887..6676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score289.3
Seed ortholog evalue4.1e-75
Seed eggNOG ortholog2880.D7FHI0
Preferred nameVPRBP
KEGG koko:K10744,ko:K11789
KEGG Pathwayko03030,map03030
GOsGO:0000122,GO:0000151,GO:0001650,GO:0001775,GO:0002200,GO:0002376,GO:0002520,GO:0002521,GO:0002562,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016301,GO:0016310,GO:0016444,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0018107,GO:0018193,GO:0018210,GO:0019219,GO:0019222,GO:0019538,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0030331,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0034641,GO:0035173,GO:0035184,GO:0035212,GO:0035257,GO:0035258,GO:0035405,GO:0036211,GO:0040008,GO:0042113,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045321,GO:0045892,GO:0045934,GO:0046483,GO:0046649,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051427,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990164,GO:1990234,GO:1990244,GO:1990245,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.histone kinase activity (H2A-T120 specific)
EggNOG OGsKOG1832@1,KOG1832@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03032,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size1764
Cds size1764
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13287.1949.1prot_S-dermatodea_contig13287.1949.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13287 887..6676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.0000358-CDS-S-dermatodea_contig13287:886..14801622924281.0000358-CDS-S-dermatodea_contig13287:886..1480Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13287 887..1480 +
1694079147.8243237-CDS-S-dermatodea_contig13287:886..14801694079147.8243237-CDS-S-dermatodea_contig13287:886..1480Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13287 887..1480 +
1622924281.0122235-CDS-S-dermatodea_contig13287:2714..28191622924281.0122235-CDS-S-dermatodea_contig13287:2714..2819Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13287 2715..2819 +
1694079147.8348832-CDS-S-dermatodea_contig13287:2714..28191694079147.8348832-CDS-S-dermatodea_contig13287:2714..2819Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13287 2715..2819 +
1622924281.0223727-CDS-S-dermatodea_contig13287:3617..42991622924281.0223727-CDS-S-dermatodea_contig13287:3617..4299Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13287 3618..4299 +
1694079147.854975-CDS-S-dermatodea_contig13287:3617..42991694079147.854975-CDS-S-dermatodea_contig13287:3617..4299Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13287 3618..4299 +
1622924281.031328-CDS-S-dermatodea_contig13287:4464..47751622924281.031328-CDS-S-dermatodea_contig13287:4464..4775Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13287 4465..4775 +
1694079147.8662229-CDS-S-dermatodea_contig13287:4464..47751694079147.8662229-CDS-S-dermatodea_contig13287:4464..4775Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13287 4465..4775 +
1622924281.0443065-CDS-S-dermatodea_contig13287:6604..66761622924281.0443065-CDS-S-dermatodea_contig13287:6604..6676Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13287 6605..6676 +
1694079147.8771179-CDS-S-dermatodea_contig13287:6604..66761694079147.8771179-CDS-S-dermatodea_contig13287:6604..6676Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13287 6605..6676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13287.1949.1

>prot_S-dermatodea_contig13287.1949.1 ID=prot_S-dermatodea_contig13287.1949.1|Name=mRNA_S-dermatodea_contig13287.1949.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=588bp
HRRSELTLRACSCVKQYLRCSLALAVLRQVQRSGGGGGTGQQQQQQQQQQ
QQQQGQQGSTSASGRGGGGSSGGGGGGGTAGAGAGISTAAVASPSPKASP
RPAGRAAWQCKPLAVDDAAHAANVAAVKGAGLGSGEGRQATGGLGLGWVA
GAGGVGGVGGVGGGGGAVGAGRGRGGVAVRLGMHWAPAVQLMHHRGVQAL
INVVDAMLSQRTMGADTALYALDALGTAALCPLVYPELCRPGTNNSTEGG
AQSSSTSALSHTAASTSPSQPSPLSAGAANASPGNTNTRSGGGGGSGGGG
GGSSSWGRSRSTGDGGIGVSGGAGGVDGGGGGSGSGGGWALPHNRLGVEV
LLEAAGGVRQRDTGAVMCAALKVLETCCRPHKACGPPVQSVAGSAAGGAM
MASSSAPGLSTAAAAGHAAGSAAGRAFGHRSGGGGGSAAAASAAASASSS
AAGAGPASGEGFRAPAGGAGAGAAESRDYATRGSGGGGGGGGGGGGGRKG
GGEGERSVDDRLQRPMRKLIRERNGIRVLVGLLRYRRQAAAADAVRLRAA
LCLLGLAHDVQIAQVLEKMRITTTLSDTVRAGPVVNR*
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mRNA from alignment at S-dermatodea_contig13287:887..6676+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13287.1949.1 ID=mRNA_S-dermatodea_contig13287.1949.1|Name=mRNA_S-dermatodea_contig13287.1949.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5790bp|location=Sequence derived from alignment at S-dermatodea_contig13287:887..6676+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CATCGCAGGTCGGAGCTGACACTCAGGGCCTGCAGCTGCGTGAAGCAGTA
CCTCCGCTGCAGCCTCGCGCTCGCGGTACTGCGGCAGGTGCAGCGCTCGG
GTGGCGGTGGGGGCACCGGTCAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGGGGCAGCAGGGGTCGACATCGGCGTCTGGACGCGGCGG
CGGCGGCAGTAGCGGTGGTGGTGGTGGTGGAGGCACCGCCGGAGCTGGCG
CGGGGATCTCAACGGCCGCGGTGGCATCGCCATCCCCGAAGGCGTCCCCG
CGCCCCGCCGGGCGTGCGGCTTGGCAGTGCAAACCCTTGGCGGTGGACGA
TGCCGCCCACGCCGCGAACGTGGCGGCGGTGAAGGGGGCGGGCCTTGGAA
GCGGGGAGGGGAGGCAGGCTACAGGGGGTCTGGGTCTGGGTTGGGTCGCG
GGCGCGGGTGGCGTCGGTGGCGTGGGTGGCGTTGGCGGGGGGGGGGGCGC
GGTTGGGGCTGGGAGGGGCCGGGGTGGGGTGGCGGTTCGGTTGGGGATGC
ACTGGGCTCCGGCTGTTCAGTTGATGCATCACCGGGGGGTGCAGGTGGGG
GGGACACACAGTGTAGTACAGTACAGTACTTGTAGGATGTGGCCTATACT
TGTACCGATATGCGGAATGAGCGCGAACGAAACATGTACTTGTAAAGGAT
TTTTAGTGTTTGGTTGAAAATGAACTATCGTAATATTTACTTTTTCTTTT
TTGCAGGATTTTCAAACTATCGTATGTTTCAATTGCATGTAACCTCCCCC
CGCCCCCCCCCCCCCCCCCCAACGCCCCCCTTCCAAAGCCCCCAACCCCC
TACCCCTCCAACTTTGGCCTNNNNNNNNNNTTTTTTTTGTTTTTTAAATC
TCTGTTTTTTTTTATATGTAGTGACGCTCCCCCCCCCCCCCCCCCCCCCC
CCCAAACGCCCACTGTCGAAAGCACGCACACTCGTACCTCTACACTTTGG
GCTTAGTGTTAAGAGTTTATATAGATTTTACTGTACATCTGCAACCGCCG
AAAGAGTCGTATTTTCCGGATCGTTAGGGTGGTGGGGAAGGGTCTGGGTC
GATGGGGCAAGGGTCATCTTGCTTTTGTTTTCCTCCGGGGGGGGGGTGTA
CTCATTGATCGTGCATGCCGTAGTCGTTAGACCATAGACCTCGCCTTCCT
ACAAAGCCNNNNNNNNNNCCCTTCACCCTTCTCTTCCATATGATACCCCC
ATCTCTCCGGAGCGGGGGGGGGGGGGGGGGGGGGTGTTCGTGAGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGTACTTAGACCGTATACCTATACTGAG
TTAGCTTGGGCCATCGTTTCCTCTACAAAAAGATTGAACCCCGACGTTCG
CTCTGTTGTGTTTTTGTAATTATTTTATTGTGTCGAGGGGTTCTTATGTC
GAACGCATGTCGTATCCAAACGGACATAGACCACGCGTCCCAGCAATGCC
GGGATGGCGCGATATGCCGGGTTTCTGCCGGCCGGGCTTCGTTTTTACAA
GGATGATGCAGTACCAGCTGTGTCTTCATCACCCTTGCGTAGATAGAATG
CTATCCTTGTGTGATGTTGCATTTGTTTTGGCGATTTTGTGGTTGACATG
ACCCGCCCACCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCNNNNNNNNNNGCTTTATTTTCCCTTTTGATTTTTTTTTCGTT
TCGCTTTTGTTGCCTTGTTTTTGTTTTCCGCGCCCCCCCCCCCCCCCCCC
TCCCCACCACCACCACCTGCGCGCCCAGGCCCTGATTAACGTGGTGGATG
CCATGCTCAGCCAGAGGACGATGGGAGCGGACACGGCTCTGTACGCCCTC
GATGCTCTCGGCACGGCGGCGCTCTGTCCTCTGGTACGTTGATTGGTCAT
ACATTTTTTGTTTTTTCAATCCGGTGGCGCGTTGGTTAGTTTTCGTCGTG
TGATATGCATAATACCTTGGTTGGTGTGAAGTGTGTGTGTGTGTGTGTTT
TTTTACTGCAGCAAAAATTCCGAGAAATCGTCGAGCTGCGGGACTGCCGA
ACCCAGTGCGCTATGATAAGCAAAGGTGAGAACGGGGGAGAGGTGGGATG
ATCCCTTGTGACCAGAGATACACCTCGGAGAAGCAAGTCTATNNNNNNNN
NNAAAAGGGGAAAGAAGGAATAATCCATTTAAACCAAAAAAAGAACTAGG
AAAAGAAAGTATATAAAAAAAAAAAAAAAAAAAAAAAAAGTGGGATGTGC
ATGGTAGTACAGCAGTGTATCATGCTGTGATGCTTAAGAAAGAGATGCTG
TGGCGTCGCCGTGCATCTCTTGGGAGGGTATTGTTGTAGCGATTACAAGA
TAGCGTTTTCGCTTGCTCCTTCGCTTTCAACTCTAGTATCTATATGTATT
GTGTCTTGTGTTTATCGTTATTATTATGATATCCCCGCGTTCATTCCACG
TCGCGACTTACGACGTGTTGAGCTACTATGACGTAACGTTATATTGTGGT
TCATGGGAGGATACTATGGCTTGACCGCGACTCCCATCCACAGCGGCGAC
GGCCGCGGCCGCGGCCAATATCTACTTGCTATGGCACTCCTGTTGTTCTA
CATAAACACGACACGTCTAGCTTCACACGGCTCAAGCTGACCCCCCCCCC
CTCCCCCCCCCCACCAACCTGTCCCGTGCAGGTCTATCCAGAGCTCTGCC
GCCCAGGAACAAACAACTCCACAGAAGGAGGCGCGCAGTCCTCGTCTACA
TCGGCACTGTCCCACACGGCCGCCTCCACCTCCCCGTCTCAACCATCTCC
CCTTAGCGCCGGCGCTGCAAACGCCAGCCCAGGTAATACCAACACACGCA
GCGGTGGCGGTGGCGGCAGCGGTGGCGGCGGCGGTGGCTCAAGCTCGTGG
GGTCGAAGCAGGAGCACTGGGGACGGCGGCATCGGCGTTTCCGGCGGTGC
GGGCGGCGTCGACGGTGGGGGCGGTGGCAGCGGCAGCGGTGGCGGCTGGG
CGCTCCCGCACAACCGACTCGGAGTGGAAGTGCTGCTGGAAGCTGCGGGC
GGAGTGCGGCAAAGGGACACAGGAGCCGTCATGTGCGCGGCCCTGAAGGT
CTTGGAGACGTGCTGCAGGCCGCATAAGGCGTGTGGCCCTCCCGTGCAAT
CGGTGGCCGGTTCTGCGGCGGGGGGGGCAATGATGGCGTCGAGTAGCGCC
CCCGGCCTGTCCACTGCTGCAGCCGCAGGCCACGCCGCAGGCTCGGCCGC
AGGCCGTGCGTTTGGCCACCGCAGTGGCGGCGGCGGTGGCTCCGCTGCCG
CCGCTTCTGCTGCTGCTTCTGCTTCTTCTTCTGCAGCCGGCGCGGGACCC
GCGTCAGGAGAAGGTGGCGGTAGCGCAGGAGGAGGGGGAGACAACAAGCA
AGGGGTGGATGTGCACGGGAATGCCAACGCGCCCTCCGCAACGGCGGCCG
TATCGTTAGGATCGAGCTCCACCGCTGAAACCGCTGCGGGTGCATCGTCG
TCAGCAGCGGCGATGTCGTCTGTGGCAGGGTTTCGAGCACCCGCAGGCGG
GGCGGGAGCGGGGGCTGCGGAGAGCAGGGATTATGCCACTCGTGGCAGCG
GCGGCGGTGGTGGCGGTGGTGGTGGGGGCGGGGGGGGGAGGAAGGGGGGC
GGTGAAGGGGAGCGGTCGGTGGATGACAGGCTGCAGCGTCCCATGCGGAA
GCTAATTCGGGAGCGGAACGGTATTCGGGTTCTCGTGGGGCTTCTGAGGT
ACCGGAGGCAGGCGGCGGCGGCAGATGCGGTGCGGCTGAGAGCGGCGCTG
TGCCTGCTGGGTCTGGCGCACGACGTGCAGATCGCCCAGGTGCGTTGGTG
TGTTTGGTTTTGCCTGTTGTTGGTGGTGTTTTTGCTGTTGTTTTGGTGAT
GGTGGTGGTGATGGTGGTGTGCTGTGGAGAGAGCACTGCCGTCGCAGGAG
GCGTTTTTGTTCGATTTTCTTCCCGGGTAAGCGTTCATCACCAACGAACG
AATTGGGGGTGGACATCTGCGGCCAATGAAGAGTTACCGCAGATGTGCGG
AATCGGTTTCGAAAACTCATTCACGAGTGGCTTGACCGACTGACCACAAG
CTCTGATGTAAATGTAGTCTCTTCCCTTCGTTATTTCCGCCATCTGACCG
CGCAACACCGTCGGGTCGGACTCAGCCGTGCTCGGTTGTACGTGGGAAAA
AATCCATCAAGGTCAATTAACGTTTTAATCGTCTTGCAGGAATTGAATTG
ACCATTGGTATCCTTGCTCGGTGGTGCCCGACATCGACCACGCATCCCAA
CAATGCCGGGACGGGCGATGTGCCGGGTTTTCGGTTCGCCGCTTTCCAGG
CTGCGTTTCACCAGGATGGTACGATATCAGCCGCGCTAGCCATCACATCC
TTGTGTTTTGCGACGCCAACCGACATGCCACGTGTTGGCTGGACATACCG
GACAACCAAATGTTGCACAGTCAGTATCATAGGCGCGACTATACTCCAAG
TACCGCAAAGGGACTTTCACCTCCGTGCGAACGCAAAAACGCCGTACCAA
CAACCAACAACTCCATGGTACCGTCATCGATGCAGCAACCACCGTCGCGT
TTCTCTTCGTTTTTATTACAAATTTATCCTGTGTCGCGTGGTATAAAAGT
AATGCAGACTAGAGCTAGGGCCTCGGGCTACAGGGCTCGGCGCGGGCTGG
TCTGGAGATTGACCGTCTTGGATGGGTGAAACATTTTCCGGCCACGTTAT
CGGCAACATTTTATGTTGTTATTCGGTATTATAGCGTTTTTCTCTTCTCT
GGGGTCAGTATTGTTTTCTTTCGTTTTGTGCTTTTGCCCCTACAGTAAAT
ACCAGGGGCTGTACTATTGCGTATTGTAGAGGTAGAGAGTTCTGATTATA
GAGTAGTTATTTTCTCCTTGACTCTTTGCGCATCTGACCACAAGTCGGGT
AGGATTTAAGCCGATCGGCTATACGCGTGCAATTCAACCAACCAATCAAT
CAATCAATCACTCCAAATTTATCACCCCCTGCACGGGACATACCCGTGAT
GGTGACGTTTAGTTTTCCCGCGAAAAAATGAAGTCCTTCCCCCAAAGAGG
GTCACGACTTAGTGCGGCCCCCACGCAACTGACCGACGGAAGGGGCTGCT
ATCAAAACCCTCTCAGGGGGGCAAATGCAATCGCAACGTTCTCTGGACAG
TTCTCCGGAACGTTCTCCGAATAATTCTCTGAAGATGCAACTGGCCGATG
CTCGCTCTTGCTCATATCATACGAAAAATACAGGTTTCAGTTTTAATTTA
TGGCAATCCTTCGCACATTTCCTTCCTCTCTCTTTCTCTTATAATTTTAT
TTTATTTTATTTTTTTTATTATTATTTGATTTGCACACGTATAGCCGATC
GGCTTAATCCGACCTACCCGACTTGTGGTCAGACACGCAAAAGAGTCAAG
GAGAAAAATAAAAACTAATCAGAATTCTACTTCTACTACTGTATACACCG
TCACCGCCCCTGGTATCATACCTCCCCTTTTTTAAAGGGACGCAACATTG
TTTTTGCTCTCGTCATTTTATTTGATTTGATTTTCAAGCATCGTTTTGTT
TTGGGCTTTTTGCTGTTGTTGTTGTTGCTCGTTTTCGTTTTCGTTCTTTC
GTTTTTTTTTTCGGTCAGGTGCTGGAGAAGATGCGCATCACGACGACCTT
GAGCGACACCGTGCGAGCCGGGCCAGTGGTGAACAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13287:887..6676+

>mRNA_S-dermatodea_contig13287.1949.1 ID=mRNA_S-dermatodea_contig13287.1949.1|Name=mRNA_S-dermatodea_contig13287.1949.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3528bp|location=Sequence derived from alignment at S-dermatodea_contig13287:887..6676+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CATCGCAGGTCGGAGCTGACACTCAGGGCCTGCAGCTGCGTGAAGCAGTA
CCTCCGCTGCAGCCTCGCGCTCGCGGTACTGCGGCAGGTGCAGCGCTCGG
GTGGCGGTGGGGGCACCGGTCAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGGGGCAGCAGGGGTCGACATCGGCGTCTGGACGCGGCGG
CGGCGGCAGTAGCGGTGGTGGTGGTGGTGGAGGCACCGCCGGAGCTGGCG
CGGGGATCTCAACGGCCGCGGTGGCATCGCCATCCCCGAAGGCGTCCCCG
CGCCCCGCCGGGCGTGCGGCTTGGCAGTGCAAACCCTTGGCGGTGGACGA
TGCCGCCCACGCCGCGAACGTGGCGGCGGTGAAGGGGGCGGGCCTTGGAA
GCGGGGAGGGGAGGCAGGCTACAGGGGGTCTGGGTCTGGGTTGGGTCGCG
GGCGCGGGTGGCGTCGGTGGCGTGGGTGGCGTTGGCGGGGGGGGGGGCGC
GGTTGGGGCTGGGAGGGGCCGGGGTGGGGTGGCGGTTCGGTTGGGGATGC
ACTGGGCTCCGGCTGTTCAGTTGATGCATCACCGGGGGGTGCAGCATCGC
AGGTCGGAGCTGACACTCAGGGCCTGCAGCTGCGTGAAGCAGTACCTCCG
CTGCAGCCTCGCGCTCGCGGTACTGCGGCAGGTGCAGCGCTCGGGTGGCG
GTGGGGGCACCGGTCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGGGGCAGCAGGGGTCGACATCGGCGTCTGGACGCGGCGGCGGCGG
CAGTAGCGGTGGTGGTGGTGGTGGAGGCACCGCCGGAGCTGGCGCGGGGA
TCTCAACGGCCGCGGTGGCATCGCCATCCCCGAAGGCGTCCCCGCGCCCC
GCCGGGCGTGCGGCTTGGCAGTGCAAACCCTTGGCGGTGGACGATGCCGC
CCACGCCGCGAACGTGGCGGCGGTGAAGGGGGCGGGCCTTGGAAGCGGGG
AGGGGAGGCAGGCTACAGGGGGTCTGGGTCTGGGTTGGGTCGCGGGCGCG
GGTGGCGTCGGTGGCGTGGGTGGCGTTGGCGGGGGGGGGGGCGCGGTTGG
GGCTGGGAGGGGCCGGGGTGGGGTGGCGGTTCGGTTGGGGATGCACTGGG
CTCCGGCTGTTCAGTTGATGCATCACCGGGGGGTGCAGGCCCTGATTAAC
GTGGTGGATGCCATGCTCAGCCAGAGGACGATGGGAGCGGACACGGCTCT
GTACGCCCTCGATGCTCTCGGCACGGCGGCGCTCTGTCCTCTGGCCCTGA
TTAACGTGGTGGATGCCATGCTCAGCCAGAGGACGATGGGAGCGGACACG
GCTCTGTACGCCCTCGATGCTCTCGGCACGGCGGCGCTCTGTCCTCTGGT
CTATCCAGAGCTCTGCCGCCCAGGAACAAACAACTCCACAGAAGGAGGCG
CGCAGTCCTCGTCTACATCGGCACTGTCCCACACGGCCGCCTCCACCTCC
CCGTCTCAACCATCTCCCCTTAGCGCCGGCGCTGCAAACGCCAGCCCAGG
TAATACCAACACACGCAGCGGTGGCGGTGGCGGCAGCGGTGGCGGCGGCG
GTGGCTCAAGCTCGTGGGGTCGAAGCAGGAGCACTGGGGACGGCGGCATC
GGCGTTTCCGGCGGTGCGGGCGGCGTCGACGGTGGGGGCGGTGGCAGCGG
CAGCGGTGGCGGCTGGGCGCTCCCGCACAACCGACTCGGAGTGGAAGTGC
TGCTGGAAGCTGCGGGCGGAGTGCGGCAAAGGGACACAGGAGCCGTCATG
TGCGCGGCCCTGAAGGTCTTGGAGACGTGCTGCAGGCCGCATAAGGCGTG
TGGCCCTCCCGTGCAATCGGTGGCCGGTTCTGCGGCGGGGGGGGCAATGA
TGGCGTCGAGTAGCGCCCCCGGCCTGTCCACTGCTGCAGCCGCAGGCCAC
GCCGCAGGCTCGGCCGCAGGCCGTGCGTTTGGCCACCGCAGTGGCGGCGG
CGGTGGCTCCGCTGCCGCCGCTTCTGCTGCTGCTTCTGCTTCTTCTTCTG
CAGCCGGCGCGGGACCCGCGTCAGGAGAAGGTCTATCCAGAGCTCTGCCG
CCCAGGAACAAACAACTCCACAGAAGGAGGCGCGCAGTCCTCGTCTACAT
CGGCACTGTCCCACACGGCCGCCTCCACCTCCCCGTCTCAACCATCTCCC
CTTAGCGCCGGCGCTGCAAACGCCAGCCCAGGTAATACCAACACACGCAG
CGGTGGCGGTGGCGGCAGCGGTGGCGGCGGCGGTGGCTCAAGCTCGTGGG
GTCGAAGCAGGAGCACTGGGGACGGCGGCATCGGCGTTTCCGGCGGTGCG
GGCGGCGTCGACGGTGGGGGCGGTGGCAGCGGCAGCGGTGGCGGCTGGGC
GCTCCCGCACAACCGACTCGGAGTGGAAGTGCTGCTGGAAGCTGCGGGCG
GAGTGCGGCAAAGGGACACAGGAGCCGTCATGTGCGCGGCCCTGAAGGTC
TTGGAGACGTGCTGCAGGCCGCATAAGGCGTGTGGCCCTCCCGTGCAATC
GGTGGCCGGTTCTGCGGCGGGGGGGGCAATGATGGCGTCGAGTAGCGCCC
CCGGCCTGTCCACTGCTGCAGCCGCAGGCCACGCCGCAGGCTCGGCCGCA
GGCCGTGCGTTTGGCCACCGCAGTGGCGGCGGCGGTGGCTCCGCTGCCGC
CGCTTCTGCTGCTGCTTCTGCTTCTTCTTCTGCAGCCGGCGCGGGACCCG
CGTCAGGAGAAGGGTTTCGAGCACCCGCAGGCGGGGCGGGAGCGGGGGCT
GCGGAGAGCAGGGATTATGCCACTCGTGGCAGCGGCGGCGGTGGTGGCGG
TGGTGGTGGGGGCGGGGGGGGGAGGAAGGGGGGCGGTGAAGGGGAGCGGT
CGGTGGATGACAGGCTGCAGCGTCCCATGCGGAAGCTAATTCGGGAGCGG
AACGGTATTCGGGTTCTCGTGGGGCTTCTGAGGTACCGGAGGCAGGCGGC
GGCGGCAGATGCGGTGCGGCTGAGAGCGGCGCTGTGCCTGCTGGGTCTGG
CGCACGACGTGCAGATCGCCCAGGGTTTCGAGCACCCGCAGGCGGGGCGG
GAGCGGGGGCTGCGGAGAGCAGGGATTATGCCACTCGTGGCAGCGGCGGC
GGTGGTGGCGGTGGTGGTGGGGGCGGGGGGGGGAGGAAGGGGGGCGGTGA
AGGGGAGCGGTCGGTGGATGACAGGCTGCAGCGTCCCATGCGGAAGCTAA
TTCGGGAGCGGAACGGTATTCGGGTTCTCGTGGGGCTTCTGAGGTACCGG
AGGCAGGCGGCGGCGGCAGATGCGGTGCGGCTGAGAGCGGCGCTGTGCCT
GCTGGGTCTGGCGCACGACGTGCAGATCGCCCAGGTGCTGGAGAAGATGC
GCATCACGACGACCTTGAGCGACACCGTGCGAGCCGGGCCAGTGGTGAAC
AGGTGAGTGCTGGAGAAGATGCGCATCACGACGACCTTGAGCGACACCGT
GCGAGCCGGGCCAGTGGTGAACAGGTGA
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