mRNA_S-dermatodea_contig13241.1929.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13241.1929.1
Unique NamemRNA_S-dermatodea_contig13241.1929.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13241.1929.1 vs. uniprot
Match: D7G3X0_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X0_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.250e-5
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:    1 EEELREEWAARGLDPEAFDPLALLRMW 81
            EEELREEW ARGL PEAFDPL LL+MW
Sbjct:    7 EEELREEWTARGLSPEAFDPLLLLQMW 33
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13241.1929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3X0_ECTSI1.250e-585.19Heat shock protein 70 n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13241contigS-dermatodea_contig13241:788..3000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924279.3596203-CDS-S-dermatodea_contig13241:787..9701622924279.3596203-CDS-S-dermatodea_contig13241:787..970Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13241 788..970 -
1694079146.5165074-CDS-S-dermatodea_contig13241:787..9701694079146.5165074-CDS-S-dermatodea_contig13241:787..970Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13241 788..970 -
1622924279.3713555-CDS-S-dermatodea_contig13241:2901..30001622924279.3713555-CDS-S-dermatodea_contig13241:2901..3000Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13241 2902..3000 -
1694079146.5245392-CDS-S-dermatodea_contig13241:2901..30001694079146.5245392-CDS-S-dermatodea_contig13241:2901..3000Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13241 2902..3000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13241.1929.1prot_S-dermatodea_contig13241.1929.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13241 788..3000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13241.1929.1

>prot_S-dermatodea_contig13241.1929.1 ID=prot_S-dermatodea_contig13241.1929.1|Name=mRNA_S-dermatodea_contig13241.1929.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=94bp
EEELREEWAARGLDPEAFDPLALLRMWASEDDEEEMDKESIDAVMASAAA
EKSRERWMKQRQGFRDMDGDDDDDDVDVDALMAAAAARSKAGRG
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mRNA from alignment at S-dermatodea_contig13241:788..3000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13241.1929.1 ID=mRNA_S-dermatodea_contig13241.1929.1|Name=mRNA_S-dermatodea_contig13241.1929.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2213bp|location=Sequence derived from alignment at S-dermatodea_contig13241:788..3000- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGAGGAGCTAAGGGAGGAGTGGGCCGCTCGGGGTCTTGACCCTGAGGC
GTTCGATCCCCTGGCTTTGCTTCGGATGTGGGCTTCGGAGGATGACGAGG
TGTGGATTTTGATGGCGTGATGGTGGGGAGGTCGTGCTGACGATGGACGG
GTGTGCGCTGGCGGCTGCAGCAGTACAGCTGTAGCGGTTTTTATTGATTG
TTTGGTTCATTGGTTCATTGGTTCATCGATTGAGTTTGTTAAAATTGTTT
TTCTTGTTGGTTTTTTATTTTGGCTGCTTGATTTTTTACTGGTTTGCATT
GATTGACGAGGTGTGCGTTTTGATGGCGGTTGGGTGAATCTTGACGCTAG
CATGCTTAGAAACGCTTTTGGAATATCATCACGTGGCGTATATCGCCCGG
AGACGGGTGCACTCAGAGACACAACTAACGTGCCTTCAACCTAACCGCGA
CAGCGTCTTGTCACGTTTCCCCCGCCACTACGGCGAGGAATAGCCACCGT
TCGGGTACTGTACCTGTTCCATGTGAACTACGGTGCGGGCAGCTAGATGG
CCCTTTTGACAGCCTCAGTCCCAAAAGGGTTAATCAAACCACCGTTCGGG
TACTGTACCTGTTATATGTGAATACCGTTCGAGTAGATAGATGGCCTAAC
CCCGAACACGGACTCAGTCCCGAAAGGGTTAATGAAACCACCGTTCGGGT
ACTGTACCTGTTCCATGTCAAATACGGTGCGAGCAGATAGATGGCCTAAC
CCGAAAACGGACTCAGTCCCAGAAGGGTGAATCAAACCACCGTTCGGGTA
CTGTACCTGTTCCATGTCAAATACGGTGCGAGCAGATAGATGGCCTAACC
TCGAAAACGGACTCAGCCCCAAAAGGGTTTTATCAAACCACCGTTCGGGT
ACTGTACAGGTTCCATGTGAAGTACGGTGCGAGCAGATAGATGGCCTAAC
CCCGAAAACGGACTCAGTCGCAGAAGGGTTGAAGAAACCACCGTTCGGGT
ACTGTACCTGTTCTATGTGAAGTGCGGTGCGGGCAGATAGATGGCCCCGA
AAACGCACTCAGTCCCAAAAGGGTTTTATCAAACCACCGTTCGAGTACTG
TACCTGTTCCATGTCAAATACGGTGCGAGCAGACAGATGGCCTAACCCCG
AAAACGGACTCAGTCCCAAAAGGGTTTTATCAAACCACCACTCGGGTACT
GTAACTGTTCCATGCGAAATACGGTGCGTACAGATAGATGCAGACTCAGC
CCCAAAAGGGTTGATTTGCCACCGTTCGGGTACTGTACCTGTTCTATACG
AAATACGGTGCGAGCAGATAGATGGCCCCGAAGGCGGATCCAGTCCCTAA
AGGATGCCTGGTAGTTGATACGATTTTGCGCGTTTTTTAAAAGCGATTTT
AGAGTTGTTCACTTGATTCTTAATTGATAAAAAGGTTGTGGTTACTGTAT
GATACAGGGTCGCCTTTTCAGACTTTCTGAACATTTTTGTTTTCCACCCC
TCTGTTTTTTTTTCCTGGGCCTTTTGATACAGCCACCACTTGTTATAATA
CTAACGCACGCCTCACGGCCGTAGTAGCCGTGGGTACCAATTATGTAAGT
AGGAAACGAATCGCTGTTGACGCAATTGTGTATTAGAGCTCTAATATATA
GTACCAGATATGCTATTTCAGTTTTTTTTTTGTCGTGGTAAGTGTGTATC
ACCCCACGCAAAGATTTGACTGATTGATTGATTGATTGATTGATTGATTG
ATTGACTGATTGATTGATTGGCATACGTATAACCGATAGCCTTAAATCTG
ACCCGACTTTTGGTAACAGATGCCATCAGCAAATAGTCAAGGACAACGAT
AACTATTCATAACTCTTCTTCTACTAACAATACAGCAATGCCGTCCCTGG
CAATCCATAGAACACCAAAGAAGAAGCAGTAGTCCCAGATACAGAAAACG
CCAGAATAGGAAATCGGAAGCAAGGGCCTAACTGTAACCCGGTCAAAATA
TTTTTTTCGTGCCCGCGGTCTGCCGAGCAGGAGGAGATGGACAAAGAGTC
AATAGACGCAGTCATGGCGAGCGCGGCAGCGGAGAAGTCGCGGGAGCGGT
GGATGAAACAGAGACAGGGTTTCCGAGACATGGATGGCGATGATGACGAT
GACGACGTGGACGTGGACGCTCTGATGGCGGCGGCCGCGGCGCGATCCAA
GGCTGGGCGAGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13241:788..3000-

>mRNA_S-dermatodea_contig13241.1929.1 ID=mRNA_S-dermatodea_contig13241.1929.1|Name=mRNA_S-dermatodea_contig13241.1929.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at S-dermatodea_contig13241:788..3000- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGAGGAGCTAAGGGAGGAGTGGGCCGCTCGGGGTCTTGACCCTGAGGC
GTTCGATCCCCTGGCTTTGCTTCGGATGTGGGCTTCGGAGGATGACGAGG
AGGAGGAGCTAAGGGAGGAGTGGGCCGCTCGGGGTCTTGACCCTGAGGCG
TTCGATCCCCTGGCTTTGCTTCGGATGTGGGCTTCGGAGGATGACGAGGA
GGAGATGGACAAAGAGTCAATAGACGCAGTCATGGCGAGCGCGGCAGCGG
AGAAGTCGCGGGAGCGGTGGATGAAACAGAGACAGGGTTTCCGAGACATG
GATGGCGATGATGACGATGACGACGTGGACGTGGACGCTCTGATGGCGGC
GGCCGCGGCGCGATCCAAGGCTGGGCGAGGGGAGGAGATGGACAAAGAGT
CAATAGACGCAGTCATGGCGAGCGCGGCAGCGGAGAAGTCGCGGGAGCGG
TGGATGAAACAGAGACAGGGTTTCCGAGACATGGATGGCGATGATGACGA
TGACGACGTGGACGTGGACGCTCTGATGGCGGCGGCCGCGGCGCGATCCA
AGGCTGGGCGAGGG
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