mRNA_S-dermatodea_contig1323.1925.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1323.1925.1 vs. uniprot
Match: D7FK46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK46_ECTSI) HSP 1 Score: 566 bits (1458), Expect = 5.690e-195 Identity = 297/558 (53.23%), Postives = 368/558 (65.95%), Query Frame = 1
Query: 49 VCFSGHLRSFVHPVVHRSIRRNLVEAIEEDGCEVDVFAYATMGDTVASAKQGANSEFTPDEADVERALTFLAPTELVWHQEQAGIIPNSCPAGHASGGDREESPGGDGFNNEWKARWQVDKLEASPNLYWQLYKSLAAYRLALKEEERRGEGFKYDWIVRARFDVAWARPVPSLRSFSREAVWFGYLYWPMSDHFALVPRAFSDDFFSAVMAFYSCDGNSWPPPESWWQPGCHGGGYQESILFRHIHALGLPYRHYGMFDFVLARKESGGVCDLGGNAFTAAFYVLELSGALQAPFSSSDGIATLQEWKTLRCRALFPAGGMRDVRGVDAVLGQDYRTWEKLVRNPSPEAMLHAERAVA----LG-------VEAPPFTKVPVTEDIERVRSRLTAIRDAVLVFPPSETEADNLRADRPEHWKPRTLDRWGGFDVVPPYWVFSPYGCSFSQPQYPGRAPHLVMYYTLEGSLRKELAQAVKCFIHLLVKEGESVASGTSFDWSLCAGVRPLEQVMIDVYWHTEELGVCTVDGSVGRSALDHLKHFFGDPTAHCVGYGRL 1689
+CFSG +RSFVHP VHRSIR NL+E+I+ DGCEVDVFAY T DTV AKQ N EFTP+ +DVE AL L PT L+WHQ+QAGIIPN C AG + D + W+ R+ EAS +LYWQLYKSLAAYR+AL+EE+R G GF YDW++R R DVAWARP+P LRSFSR+AVWFG YWPMSDHFALVPR FSD FFSAV FY+CDG SWPPP SWWQP C G++ES+LFRH+HA +PYR Y +FDF++ R GGVC LG ++ +L L ALQ PFS + L E+ LRCR LFPA GM D R VDA+L + R WE L+ + SP +L AVA LG +A +T V ED++ R +L +RDA+ PS E A R E + LDRWGG+ P +W+ S GC ++PQ+PG +PH+V+YYT+ L +EL Q+VKCF+ ++ GE+ G + S C GVR L+ VMIDV HTEELG+CT DGS+G SA + + FF +P AHC GYGRL
Sbjct: 1 MCFSGAIRSFVHPAVHRSIRTNLIESIKADGCEVDVFAYVTREDTVVKAKQVENPEFTPNSSDVEVALAVLEPTRLLWHQDQAGIIPNGC-AGVNNRTDASRHSARHLWY--WEQRYSP---EASRSLYWQLYKSLAAYRMALREEKRIGSGFTYDWVIRGRLDVAWARPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFSAVKTFYACDGRSWPPPSSWWQPECATIGFEESVLFRHLHASEIPYRFYPLFDFIITRGVIGGVCKLGFIVYSEVCSLLGLWNALQPPFSRDHCLEALAEYSDLRCRTLFPARGMEDERRVDAILDPEPRAWEALLDS-SP--LLEPIPAVAAPGPLGRATEGDSSDASIYTSVAKAEDVDSARLKLVLLRDALQA--PSPLEPHYEMALREEAKERSLLDRWGGWKTHPLWWIHSIMGCPLAEPQHPGPSPHVVLYYTMGEPLVRELVQSVKCFVSRII--GETQVGGGDTNQSSCNGVRSLDLVMIDVSLHTEELGICTADGSLGLSASEQVSRFFDNPAAHCAGYGRL 545
BLAST of mRNA_S-dermatodea_contig1323.1925.1 vs. uniprot
Match: D7G5E2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E2_ECTSI) HSP 1 Score: 310 bits (794), Expect = 8.540e-90 Identity = 226/665 (33.98%), Postives = 296/665 (44.51%), Query Frame = 1
Query: 37 CRVAVCFSGHLRSFVHPVVHRSIRRNLVEAIEEDGCEVDVFAYATMGDTVASAKQGANSEFTPDEADVERALTFLAPTELVWHQEQAGIIPNSC-----------------------------PAGHASGGD-REESPGGDGFNNEWKARWQVDKLEASPNLYWQLYKSLAAYRLALKEEERRGE-----------GFKYDWIVRARFDVAWARPVPSLRSFSREAVWFGYLYWPMSDHFALVPRAFSDDFFSAVMAFYSCD---GNSWPPPESWWQPGC-----------------------------------------------------HGGGYQESILFRHIHALGLPYRHYGMFDFVL-------------ARKESGGVCDLGGNAFTAAFYVLELSGALQAPFSSSDGIATLQEWKTLRCRA---LFPAG-GMRDVRGVDAVLGQDYRTWEKLVRNPSPEAMLHAERAVALGVEAPPFTKVPVTEDIERVRSRLTAIRDAVLVF--------------------PPSETEADNL---------RADRPEHWKP--RTLDRWGGFDVVPPYWVFSPYGCSFSQPQYPGRAPHLVMYYTLEGSLRKELAQAVKCFIHLLVKEG---ESVASGTSFDWSLCAGVRPLEQVMIDVYWHTEEL 1587
C VAV SG +RSFV PV+HRS RR++VEAI+ +GC VDVF YA++GD +Q A + ++E + FL+PT+LVWHQEQAGIIPNSC P G GGD R P G K + S YWQLY+SLAAYRLA++ E+ + + KYDWIV RFDVAW + +PS R+FSR+ VWF WPMS +FALVPRAFSD FFSAV AF++CD G SWPP E+WWQP C G G+ ESI++RH+HA G+PYR Y MF++ A ++ C+ + +L G ++S + L EW +L CR L G G + RG + L D TW + P+ V EA + ED+ R L A+RDAV+V P ET NL A +P P +T W V S GC ++ YPGRAPH++ + + + +ELA A KC H ++ SV FD ++CA R LE VMIDV H+ E+
Sbjct: 39 CAVAVSISGDVRSFVDPVLHRSFRRHVVEAIKAEGCTVDVFVYASLGDEDLLVEQDAETI-----RNIEATMEFLSPTQLVWHQEQAGIIPNSCRPTATTPTTGGGDEAQPSSFAESSVPNARPTGGNVGGDNRSNQPRGHASKEPSKPPSREQFSTRSERFYWQLYESLAAYRLAVQREDEKEKEAATIPTSSPASSKYDWIVTTRFDVAWKKSLPSFRAFSRDVVWFAAKSWPMSTNFALVPRAFSDRFFSAVEAFHACDDGNGPSWPPGEAWWQPDCGEHGQENGNSSGNVHSGGNLHHSPRSGPAGGGGGFELRGSDDGSIFHDNRGGGRGEGFGESIVYRHLHASGVPYRPYPMFEYYTVPPYVRDGDADGDAAGDTRSGCETSTPDYFTGCVLLGTVGLFSQAYTSEECATALSEWSSLHCRTSTHLEATGPGHQTERGSEN-LDPDLTTWPRSSVGVYPDETETDNGDVLGAAEADRVQE----EDLRRAWFNLAALRDAVIVAADDGSEEVMHGSSNAGEEDTPSGETSRRNLGKEDGGDHDAAPKPSGSSPTRQTNRSWS---------VHSQGGCRLNE--YPGRAPHIIRHSSTDSHRMRELALATKCLAHRFIEGATAWSSVNEDFGFDATVCASSRSLELVMIDVSLHSAEV 682
BLAST of mRNA_S-dermatodea_contig1323.1925.1 vs. uniprot
Match: A0A6H5KVJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ6_9PHAE) HSP 1 Score: 299 bits (765), Expect = 1.190e-89 Identity = 216/639 (33.80%), Postives = 291/639 (45.54%), Query Frame = 1
Query: 37 CRVAVCFSGHLRSFVHPVVHRSIRRNLVEAIEEDGCEVDVFAYATMGDTVASAKQGANSEFTPDEADVERALTFLAPTELVWHQEQAGIIPNSC----------------PAGHASGGDREESP-----GGDGFNNEWKARWQVDKLEASP-----------NLYWQLYKSLAAYRLALKEEERRGE-----------GFKYDWIVRARFDVAWARPVPSLRSFSREAVWFGYLYWPMSDHFALVPRAFSDDFFSAVMAFYSCD---GNSWPPPESWWQPGC-----------------------------------------------------HGGGYQESILFRHIHALGLPYRHYGMFDFVL-------------ARKESGGVCDLGGNAFTAAFYVLELSGALQAPFSSSDGIATLQEWKTLRCRALFPAGGMRDVRGVDAV---LGQDYRTWEKL-VRNPSPEAMLHAERAVALGVEAPPFTKVPVTEDIERVRSRLTAIRDAVLVFPPSETE-----ADNLRAD----RPEHWKPRTLDRWGGFDVVPP-------------YWVFSPYGCSFSQPQYPGRAPHLVMYYTLEGSLRKELAQAVKCFIHLLVKEG---ESVASGTSFDWSLCA 1530
C VAV SG +RSFV PVVH S +R++VEAI+ +GC VDVF YA++GD +Q A + ++E + FL+PT+LVWHQEQAGIIPNSC P+ AS P GGD +N+ R V K + P YWQLY+SLAAYRLA++ E+ + + KYDWIV RFDVAW VPSLR+FSR+ VWF WPMS +FALVPRAFSD FFSAV AF++CD G SWPP E+WWQP C G G+ ESI++RH+HA G+PYR Y MF++ A +++ C+ + + +L G ++S L EW +L CRA R + L + W + V S EA H R G + ED++R S L A+RDAV++ ++E + N D R + D G D P + V S +GC ++ YPGRAPH++ + + + +ELA A KC H ++ SV SFD ++CA
Sbjct: 38 CAVAVSISGDVRSFVDPVVHLSFQRHVVEAIKAEGCTVDVFVYASLGDEDLLEEQDAETI-----RNIEATMEFLSPTQLVWHQEQAGIIPNSCRPTATTPTTGGGDEARPSSFASSNAANAKPKGGNVGGDNRSNQ--PRGHVSKEPSKPPGREQFSTRSERFYWQLYESLAAYRLAVQREDEKEKEAATIPTSSPASSKYDWIVTTRFDVAWKNSVPSLRAFSRDVVWFAAKSWPMSTNFALVPRAFSDRFFSAVEAFHACDDGNGPSWPPGEAWWQPDCGEDGQENENGSGSVHSGGNLHHSPRGGPAGGGGDFDLRDWDDGSIFHDNRGGSRGEGFGESIVYRHLHASGVPYRPYPMFEYYAVPPYVRDGDVDGGAARDTRSGCEASTSDYLTGCVLLGTVGLFSPAYTSEACATALSEWSSLHCRASTQPEATSTGRQTERASKNLNPYLKAWPRSSVGVSSGEAKTH--RGDVFGTAEEDRVQ---EEDLKRAWSNLVALRDAVILAADDDSEEATHGSSNAGEDDTPIREASRRHLGKDDGGDHDAAPKPSNSSPTRQTNRSWSVHSQWGCRLNE--YPGRAPHIIRHSSTDSHRMRELALATKCLAHRFMEGATAWSSVIEDFSFDATVCA 662
BLAST of mRNA_S-dermatodea_contig1323.1925.1 vs. uniprot
Match: A0A7S2WLT0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLT0_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.520e-17 Identity = 85/291 (29.21%), Postives = 122/291 (41.92%), Query Frame = 1
Query: 34 VCRVAVCFSGHLRSFVHPVVHRSIRRNLVEAIEEDGCEVDVFAYATMGDTVASAKQGANSEFTPDEADVERALTFL------------------------APTELVWHQEQAGIIPNSCPAGHASGGDREESPGGDGFNNEWKARWQVDKLEASPNLYWQLYKSLAA-YRLALKEEERRGEGFKYDWIVRARFDVAWARPVPSLRSFSREAVWFGYLYWPMSDHFALVPRAFSDDFFSAVMAFYSCDGNSWPPPESWWQPGCH---------GGGYQESILFRHIHALGLP 804
VCRVAVC SG R+F HP+V ++ +NL+ A+E CEVD+F D VA + S T + E L L T ++ + P +C G GGD + + L A+ W +S+++ L L+EE R + Y W++R RFD+++ P+P L S SR+AV Y P+SD FA+VPRA+ D +F MA C W+ CH G G E +L + A P
Sbjct: 475 VCRVAVCMSGQWRTFAHPLVRQTFHQNLLGALETS-CEVDLFLCIKPSDQVAGRRNEHFSRTTAAPSTREAILEVLRAELPDVLSRVRLVLADEPLPQSNGQTSALYPLDTGTSFPKACANG-----------GGDCCSRSQPSAEVQSALAAA----WPSLESVSSCLDLVLREERLRQQD--YHWVIRTRFDLSYLVPLPPLASLSRKAVHVPYSSLPISDTFAVVPRAYVDAYF---MASDLC-----------WRGACHRWRARDFPKGAGSTELVLLAALRAAEAP 733
BLAST of mRNA_S-dermatodea_contig1323.1925.1 vs. uniprot
Match: A0A0D2W0T8_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2W0T8_CAPO3) HSP 1 Score: 72.0 bits (175), Expect = 7.600e-10 Identity = 76/277 (27.44%), Postives = 111/277 (40.07%), Query Frame = 1
Query: 46 AVCFSGHLRSFVHPVVHRSIRRNLVEAIEEDGCEVDVFAYATMGDTVASAKQGANSEFTPDEADVERALTFLAPTE----LVWHQEQAGIIPNSCPAGHASGGDREESPGGDGFNNEWKARWQVDKLEASPNLYWQLYKSLAAYRLALKEEERRGEGFKYDWIVRARFDVAWARPVPSLRSFSREAVWFGYLYWPMSDHFALVPRAFSDDFFSAVMAFYSCDGNSWPPPESWWQPGCHGGGYQESILFRHIHALGLPYRHYGMFDFVLARKESGGVC 864
A+ FSG +RSF +P + S+R+NL+ A+ G + +F+ + + D S ANS+ D+ AL L P + +VW Q +P+ W + P+L L L +Y LAL E + G K+DWIVRAR DV + P+PSL S + G +S+ FA+VPR FSD F C N+ L + A +PY + F + R G C
Sbjct: 101 ALTFSGTMRSFKYPALLDSLRKNLLAAL---GGTILIFSNSRLEDWPRSGLGCANSQ-----EDLFDALRDLLPGKAEHFVVWRSFQ---VPDPM--------------------------W-THNCASRPSLIQSL-SILDSYSLALDYENQ--VGVKFDWIVRARPDVGFPEPLPSLASLNESVFVPGNSEHQLSNQFAIVPRKFSDVFLRLPPVEIECAANN-----------------DNDRLRLWLDANNIPYYRHKAIHFTIVRAYYGAEC 319
BLAST of mRNA_S-dermatodea_contig1323.1925.1 vs. uniprot
Match: A0A0D2US65_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2US65_CAPO3) HSP 1 Score: 71.6 bits (174), Expect = 1.080e-9 Identity = 67/212 (31.60%), Postives = 96/212 (45.28%), Query Frame = 1
Query: 46 AVCFSGHLRSFVHPVVHRSIRRNLVEAIEEDGCEVDVFAYATMGDTVASAKQGANSEFTPDEADVERALTFLAPTE----LVWHQEQAGIIPNSCPAGHASGGDREESPGGDGFNNEWKARWQVDKLEASPNLYWQLYKSLAAYRLALKEEERRGEGFKYDWIVRARFDVAWARPVPSLRSFSREAVWFGYLYWPMSDHFALVPRAFSDDFF 669
AV FSG +RSF +P + S+R NL+ A+ G + +F+ + + D S ANS+ D+ AL L P + +VW Q +P+ W + P+L L L +Y L L E + G K+DWIVRAR DV + P+PSL S + G + +S+ FALVPR +SD FF
Sbjct: 101 AVAFSGTMRSFKYPALLDSLRNNLLAAL---GGTILIFSNSRLEDWPRSGLGCANSQ-----EDLFDALRDLLPGKAEHFVVWRSFQ---VPDPM--------------------------W-THNCASRPSLIQSL-SVLDSYSLVLDYENQ--VGVKFDWIVRARPDVGFPEPLPSLASLNESVFVPGNSEYQLSNQFALVPRKYSDVFF 271
BLAST of mRNA_S-dermatodea_contig1323.1925.1 vs. uniprot
Match: UPI0001FE4FEA (hypothetical protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE4FEA) HSP 1 Score: 72.0 bits (175), Expect = 1.850e-9 Identity = 76/277 (27.44%), Postives = 111/277 (40.07%), Query Frame = 1
Query: 46 AVCFSGHLRSFVHPVVHRSIRRNLVEAIEEDGCEVDVFAYATMGDTVASAKQGANSEFTPDEADVERALTFLAPTE----LVWHQEQAGIIPNSCPAGHASGGDREESPGGDGFNNEWKARWQVDKLEASPNLYWQLYKSLAAYRLALKEEERRGEGFKYDWIVRARFDVAWARPVPSLRSFSREAVWFGYLYWPMSDHFALVPRAFSDDFFSAVMAFYSCDGNSWPPPESWWQPGCHGGGYQESILFRHIHALGLPYRHYGMFDFVLARKESGGVC 864
A+ FSG +RSF +P + S+R+NL+ A+ G + +F+ + + D S ANS+ D+ AL L P + +VW Q +P+ W + P+L L L +Y LAL E + G K+DWIVRAR DV + P+PSL S + G +S+ FA+VPR FSD F C N+ L + A +PY + F + R G C
Sbjct: 101 ALTFSGTMRSFKYPALLDSLRKNLLAAL---GGTILIFSNSRLEDWPRSGLGCANSQ-----EDLFDALRDLLPGKAEHFVVWRSFQ---VPDPM--------------------------W-THNCASRPSLIQSL-SILDSYSLALDYENQ--VGVKFDWIVRARPDVGFPEPLPSLASLNESVFVPGNSEHQLSNQFAIVPRKFSDVFLRLPPVEIECAANN-----------------DNDRLRLWLDANNIPYYRHKAIHFTIVRAYYGAEC 319
BLAST of mRNA_S-dermatodea_contig1323.1925.1 vs. uniprot
Match: A0A8J2WSC4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSC4_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 2.310e-7 Identity = 58/191 (30.37%), Postives = 87/191 (45.55%), Query Frame = 1
Query: 40 RVAVCFSGHLRSFVHPVVHRSIRRNLVEAIEEDGCEVDVFAYATMGDTVASAKQG----------ANSEFTPDEADVERALTFLAPTELVWHQEQAGIIPNSCPA-GH-----ASGGDREESPGGDGFNNEWKARWQVDKLEASPNLYWQLYKSLAAYRLALKEEERRGEGFKYDWIVRARFDVAWARPVP 564
R AVC G R+F HPVV+R+++ N+++A+ G V FAY +GD + + G AN T +E D +AP ++ ++ A + P CP GH +S DR P E +W K +L QL Y + + E R GF++D I+ AR D+ W P+P
Sbjct: 69 RTAVCVGGAARTFGHPVVYRTLKANVIDAL---GGIVVPFAYLKLGDDRGTIRDGGQCVTNCRLAANVTATKEEVDEGLRHLQIAPDNVII-KDTAHVEPPRCPNYGHFRINGSSENDRSALP-------EDTRQWAAYK-----SLQGQLDNRYQCYNMIKRHENR--SGFRFDAILYARADLMW--PIP 239
BLAST of mRNA_S-dermatodea_contig1323.1925.1 vs. uniprot
Match: A0A7S2WMN0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WMN0_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 2.600e-7 Identity = 43/121 (35.54%), Postives = 59/121 (48.76%), Query Frame = 1
Query: 469 LALKEEERRGEGFKYDWIVRARFDVAWARPVPSLRSFSREAVWFGYLYWPMSDHFALVPRAFSDDFFSAVMAFYSCDGNSWPPPESWWQPGCH---------GGGYQESILFRHIHALGLP 804
L L+EE R + Y W++R RFD+++ P+P L S SR+AV Y P+SD FA+VPRA+ D +F MA C W+ CH G G E +L + A P
Sbjct: 9 LVLREERLRQQD--YHWVIRTRFDLSYLVPLPPLASLSRKAVHVPYSSLPISDTFAVVPRAYVDAYF---MASDLC-----------WRGACHRWRARDFPKGAGSTELVLLAALRAAEAP 113 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1323.1925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1323.1925.1 >prot_S-dermatodea_contig1323.1925.1 ID=prot_S-dermatodea_contig1323.1925.1|Name=mRNA_S-dermatodea_contig1323.1925.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=563bp ENGGGEEAVAAVCRVAVCFSGHLRSFVHPVVHRSIRRNLVEAIEEDGCEVback to top mRNA from alignment at S-dermatodea_contig1323:10122..21004+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1323.1925.1 ID=mRNA_S-dermatodea_contig1323.1925.1|Name=mRNA_S-dermatodea_contig1323.1925.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=10883bp|location=Sequence derived from alignment at S-dermatodea_contig1323:10122..21004+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1323:10122..21004+ >mRNA_S-dermatodea_contig1323.1925.1 ID=mRNA_S-dermatodea_contig1323.1925.1|Name=mRNA_S-dermatodea_contig1323.1925.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3378bp|location=Sequence derived from alignment at S-dermatodea_contig1323:10122..21004+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |