mRNA_S-dermatodea_contig13198.1905.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13198.1905.1
Unique NamemRNA_S-dermatodea_contig13198.1905.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13198.1905.1 vs. uniprot
Match: D8LI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI60_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 6.400e-10
Identity = 41/91 (45.05%), Postives = 54/91 (59.34%), Query Frame = 2 
Query:    2 RLVPVGGSTGVGRKLRGTWALERQGMTRTTVMAKYADDVVRRAKEASDDG----------GSTCSVLGFEESFIKATQASDALPTVERRMD 244
            RLV VGGS   G KLRGT A ER+   R  +  +Y ++ VRR   A+  G           ++CSV  FE+ +IK+TQA+DALP VE RM+
Sbjct:  345 RLVSVGGSA-EGMKLRGTAARERRERARLGLKDRYLEEAVRRNHRAASHGYDDEXXXXNASTSCSVATFEDFYIKSTQAADALPVVEGRMN 434
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13198.1905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI60_ECTSI6.400e-1045.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13198contigS-dermatodea_contig13198:3292..5553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size292
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924276.7416065-CDS-S-dermatodea_contig13198:3291..34171622924276.7416065-CDS-S-dermatodea_contig13198:3291..3417Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13198 3292..3417 +
1694079144.3669658-CDS-S-dermatodea_contig13198:3291..34171694079144.3669658-CDS-S-dermatodea_contig13198:3291..3417Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13198 3292..3417 +
1622924276.755757-CDS-S-dermatodea_contig13198:5387..55521622924276.755757-CDS-S-dermatodea_contig13198:5387..5552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13198 5388..5552 +
1694079144.3763995-CDS-S-dermatodea_contig13198:5387..55521694079144.3763995-CDS-S-dermatodea_contig13198:5387..5552Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13198 5388..5552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13198.1905.1prot_S-dermatodea_contig13198.1905.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13198 3292..5552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13198.1905.1

>prot_S-dermatodea_contig13198.1905.1 ID=prot_S-dermatodea_contig13198.1905.1|Name=mRNA_S-dermatodea_contig13198.1905.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=97bp
QACSSGGKHRRREKVAGDVGSRTAGDDPDYRHGEVRGRCRAEGERGLRRW
RQHLLRTGLRGVLYQGHASLRCVAYRRAEDGWRRPDIVIICGGGLGR
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mRNA from alignment at S-dermatodea_contig13198:3292..5553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13198.1905.1 ID=mRNA_S-dermatodea_contig13198.1905.1|Name=mRNA_S-dermatodea_contig13198.1905.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2262bp|location=Sequence derived from alignment at S-dermatodea_contig13198:3292..5553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCTTGTTCCAGTGGGGGGAAGCACCGGCGTAGGGAGAAAGTTGCGGG
GGACGTGGGCTCTCGAACGGCAGGGGATGACCCGGACTACCGTCATGGCG
AAGTACGCGGACGATGTCGTGCGGAGGTGAGCGTGGTAGGGCGCCGCTGT
TAAACCTTTACCGTTTGTGTTATGGTTGGTGTTGTTGCTGTTAAACCTTT
ACCGTTTGTGTGACTGTTTGTATTGATGCTGTTAAACCTATAACGTTTGT
GTGATTGTTGGTGTTGTTGCTGTTAAACCTTTACCGTTTGTGTGATTGTT
GGTATTGATGCTGTTAAACCTATAACGTTTGTGTGATTGTTGGTGTTGAT
GCTGTTAAACCTTTATCGTTTGTGTGATTGTTGGTATTGATGCTGTTAAA
CCTTTACCGTTTGTGTGATTGTTGGTGTTGATGCTGTTAAACCTTTATCG
TTTGTGTGATGGTTTGTGTTATTGTTGCTGTTAAACCTTTATCGTTTTGT
GTGATTGTTGGTGTTGATGCTGTTAAACCTTTATCGTTTATGTGATTGTT
GGTATTGATGCTGTTAAACCTTTATCGTTTGTGTGATTGTTGGTATTGAT
GCTGTTAAACCTTTACCGTTTGTGTGGTTGTTGGTGTTGGTGCTGTTAAA
CCTTTTGTCGTTTGTGTGATGGTTTGTGATATTGTTGCTGTTAACCCTTT
ATCGTTTGTGTGATGGTTTGTGTTACTGATGCTGTTAAACCTGTAACGTT
TGTGTGATTGTTGGTGTTGATGCTGTTAAACCTTTATCGTTTTGTGTGAT
TGTTGGTGTTGATGCTGTTAAACCTTTATCGTTTGTGTGATGGTTTGTGT
TATTGTTGCTGTTAAACCTTTAACGTTTTGTGTGATTGTTGGTGTTGGTG
GTGTTAAACCTTTATCGTTTGTATGATTGTTGGTGTTGGTGGTGTTAAAC
CTTTATCGTTTGTGTGATTGTTGGTGTTGATGCTGTTAAACCTTTAACGT
TTGTGTGATGGTTTGTGTTGTTGCTGTTAAACCTTTAACGTTTTGTGTGA
TTGTTGGTGTTGGTGGTGTTAAACCTTTATCGTTTGTGTGATTGTTTGTG
TTGGTGGTGTTAAACCTTTATCGTTTGTGTGATTGTTGGTGTTGATGCTG
TTAAACCTTTATCGTTTGTCTGATGGTTGGTGTTGATGCTGTTAAACCTT
TATCGTTTATGTGATTGTTGGTGTTGATGCTGTTAAACCTATAACGTTTG
TGTGATTGTTGGTATTGATGCTGTTAAACCTGTAACGTTTGTGTGATTGT
TGGTGTTGATGCTGTTAAACCTTTATCGTTTGTGTGATGGCTTGTGTTAT
TGTTGCTGTTAAACCTTTAACATTTTTGTGATTGTTGGTATTGATGTTGT
TGAACCTGTACGTTTGTGTGATTGTTGGTTTTGGTGCTGTTAAACCTATA
ATGTTTGTTTAATGGTTGGTGTTGATGCTGTTGAGCCTTTAACGTTTGTG
TGATTATTAGTGTTGATGCTGTTAAACCTTTATCGTTTGTCTGATGGTTG
GTGTTGATGCTGTTAAACCTTTTATCGTTTGTGTTTTGGTTTTGTTGATT
GTTGATGCTGTTAAACCTTTACCGTCTGCGTGATGGCTGTCGTTGCTGCT
GTTAAACCTTTAACGTTTGTGTGATTGTCGTTGTTGCTGCTGTTAGAGAC
CTTACGTGTGTGTGGTTTTTTATATTGGTCATGTTGTTTCTCACGTTAAC
CTTTTTCGGAGCCGAGCCTGCATCCGGAGCCATCAGCCCGCACCGTGCTC
CACATCGAACCCGCGACAGACCTAACGGTGGACACTATATACTATATAGT
ATATACTCTACACTATATACTATATACTATATACTATAATAACTCCTCGC
CGCGTATGATACTCACTATATTTCTGCCGCGCTCATGTAGCTCCCCTAAA
AATTAAAGATTTCACTAACATAGAGCGAGCGTTGGGGTCCCACCTTTCAA
GAGGGAAGATAGATTGTCCAAGGTATGATACACCTATGGATCTATGGAGG
CTCACTTGCCCCCCCCCCCCCGCTCCTCATTCCAAAACAAAAATAGGGCG
AAAGAGGCCTCAGACGATGGCGGCAGCACCTGCTCCGTACTGGGCTTCGA
GGAGTCCTTTATCAAGGCCACGCAAGCCTCCGATGCGTTGCCTACCGTAG
AGCGGAGGATGGATGGCGCCGCCCCGATATCGTCATCATCTGCGGAGGAG
GCCTGGGCCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13198:3292..5553+

>mRNA_S-dermatodea_contig13198.1905.1 ID=mRNA_S-dermatodea_contig13198.1905.1|Name=mRNA_S-dermatodea_contig13198.1905.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at S-dermatodea_contig13198:3292..5553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCTTGTTCCAGTGGGGGGAAGCACCGGCGTAGGGAGAAAGTTGCGGG
GGACGTGGGCTCTCGAACGGCAGGGGATGACCCGGACTACCGTCATGGCG
AAGTACGCGGACGATGTCGTGCGGAGCAGGCTTGTTCCAGTGGGGGGAAG
CACCGGCGTAGGGAGAAAGTTGCGGGGGACGTGGGCTCTCGAACGGCAGG
GGATGACCCGGACTACCGTCATGGCGAAGTACGCGGACGATGTCGTGCGG
AGGGCGAAAGAGGCCTCAGACGATGGCGGCAGCACCTGCTCCGTACTGGG
CTTCGAGGAGTCCTTTATCAAGGCCACGCAAGCCTCCGATGCGTTGCCTA
CCGTAGAGCGGAGGATGGATGGCGCCGCCCCGATATCGTCATCATCTGCG
GAGGAGGCCTGGGCCGAGGCGAAAGAGGCCTCAGACGATGGCGGCAGCAC
CTGCTCCGTACTGGGCTTCGAGGAGTCCTTTATCAAGGCCACGCAAGCCT
CCGATGCGTTGCCTACCGTAGAGCGGAGGATGGATGGCGCCGCCCCGATA
TCGTCATCATCTGCGGAGGAGGCCTGGGCCGA
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