mRNA_S-dermatodea_contig13195.1904.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13195.1904.1
Unique NamemRNA_S-dermatodea_contig13195.1904.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13195.1904.1 vs. uniprot
Match: A0A6H5L064_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L064_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 4.950e-55
Identity = 85/90 (94.44%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:    1 RFRVDFYHADRTAEEKSRVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGGEAKCIVFFAYRDKARLE 270
            RFRVDFYHADRTA EK+RVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDG ++KCIVFFAYRDKARLE
Sbjct:  268 RFRVDFYHADRTAAEKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE 357
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BLAST of mRNA_S-dermatodea_contig13195.1904.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.320e-51
Identity = 85/90 (94.44%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:    1 RFRVDFYHADRTAEEKSRVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGGEAKCIVFFAYRDKARLE 270
            RFRVDFYHADRTA EK+RVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDG ++KCIVFFAYRDKARLE
Sbjct:  848 RFRVDFYHADRTAAEKARVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGLDSKCIVFFAYRDKARLE 937
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BLAST of mRNA_S-dermatodea_contig13195.1904.1 vs. uniprot
Match: A0A7S3HHE6_9STRA (ATP-dependent DNA helicase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HHE6_9STRA)

HSP 1 Score: 134 bits (338), Expect = 9.830e-37
Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:   10 VDFYHADRTAEEKSRVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGGEAKCIVFFAYRDKARL 267
            + FYHAD TA EK    R WS G I LICATIAFGMGINKPDVRYVIHHS+PK+LT++YQESGRAGRDG  A+CI++F+++D+ +L
Sbjct:   73 ITFYHADLTASEKETRQRNWSKGDIKLICATIAFGMGINKPDVRYVIHHSLPKSLTNYYQESGRAGRDGESAQCILYFSFKDRTKL 158
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BLAST of mRNA_S-dermatodea_contig13195.1904.1 vs. uniprot
Match: A0A836CQM3_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQM3_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.210e-36
Identity = 65/94 (69.15%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 RFRVDFYHADR----TAEEKSRVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGGEAKCIVFFAYRDKARLE 270
            R RVDFYHA+R    ++ EK R H EW+ GR  LICAT+AFGMGINK DVRYVIHHS+PK+LTH YQESGRAGRDG  A+CIVFF++ DK RL+
Sbjct:  564 RIRVDFYHAERAPQASSSEKKRAHTEWTMGRTKLICATVAFGMGINKIDVRYVIHHSLPKSLTHLYQESGRAGRDGKRAECIVFFSFNDKNRLK 657
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BLAST of mRNA_S-dermatodea_contig13195.1904.1 vs. uniprot
Match: A0A482RQR6_9ARCH (RecQ family ATP-dependent DNA helicase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQR6_9ARCH)

HSP 1 Score: 134 bits (336), Expect = 7.320e-36
Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:   10 VDFYHADRTAEEKSRVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGGEAKCIVFFAYRDKARL 267
            + FYHAD    EK R  R WS G I +ICATIAFGMGINKPDVRYV+HHSMPK++T+FYQESGRAGRDG  A+CI++F+++DKA+L
Sbjct:  293 ITFYHADIPPHEKERRQRAWSKGDIKVICATIAFGMGINKPDVRYVLHHSMPKSITNFYQESGRAGRDGAIAECILYFSFKDKAKL 378
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BLAST of mRNA_S-dermatodea_contig13195.1904.1 vs. uniprot
Match: A0A7S4EMT8_9STRA (DNA helicase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EMT8_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.070e-35
Identity = 57/87 (65.52%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:   10 VDFYHADRTAEEKSRVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGGEAKCIVFFAYRDKARLE 270
            V FYHAD   +E+   H++WS GRI+++CAT+AFGMGI+KPDVRYVIH+SMPK+LTH+YQESGRAGRDG +A+C++F++Y+DK  LE
Sbjct:  777 VSFYHADLDPKEREHRHKQWSVGRINVLCATVAFGMGIDKPDVRYVIHYSMPKSLTHYYQESGRAGRDGEDAECVLFYSYKDKQVLE 863
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BLAST of mRNA_S-dermatodea_contig13195.1904.1 vs. uniprot
Match: B7FSW6_PHATC (ATP-dependent DNA helicase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FSW6_PHATC)

HSP 1 Score: 134 bits (338), Expect = 2.090e-35
Identity = 57/90 (63.33%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    1 RFRVDFYHADRTAEEKSRVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGGEAKCIVFFAYRDKARLE 270
            R R+ FYHAD    E+ + HREWS G + ++CAT+AFGMGI+KPDVRYVIH+SMPK++TH+YQESGRAGRDG +A CI+++ Y+DK  LE
Sbjct:  267 RIRISFYHADLDPHEREQRHREWSNGGVSVLCATVAFGMGIDKPDVRYVIHYSMPKSITHYYQESGRAGRDGDDADCILYYHYKDKKILE 356
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BLAST of mRNA_S-dermatodea_contig13195.1904.1 vs. uniprot
Match: A0A7S0KZB9_9STRA (DNA helicase (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KZB9_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.180e-35
Identity = 55/84 (65.48%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:    7 RVDFYHADRTAEEKSRVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGGEAKCIVFFAYRDK 258
            +V +YHA+   +E+   H  WS GRI ++CATIAFGMGI+KPDVRYVIH+SMPK++TH+YQESGRAGRDG +A CI+F+AY+DK
Sbjct:  190 KVSYYHAELDQQERFNRHHAWSNGRISVLCATIAFGMGIDKPDVRYVIHYSMPKSITHYYQESGRAGRDGAKADCILFYAYKDK 273
[Close]
BLAST of mRNA_S-dermatodea_contig13195.1904.1 vs. uniprot
Match: A0A1E7EUD2_9STRA (DNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUD2_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.710e-35
Identity = 56/87 (64.37%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:   10 VDFYHADRTAEEKSRVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGGEAKCIVFFAYRDKARLE 270
            V +YHA+   +E+ R H++WS+GRI+++CAT+AFGMGI+KPDVRYVIH+SMPK++TH+YQESGRAGRDG  A CI+F++Y+DK  LE
Sbjct:  727 VSYYHAELDPQERERRHKQWSSGRINVLCATVAFGMGIDKPDVRYVIHYSMPKSITHYYQESGRAGRDGDNADCILFYSYKDKQVLE 813
[Close]
BLAST of mRNA_S-dermatodea_contig13195.1904.1 vs. uniprot
Match: A0A7S3VCC4_9STRA (ATP-dependent DNA helicase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCC4_9STRA)

HSP 1 Score: 134 bits (337), Expect = 7.140e-35
Identity = 57/87 (65.52%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:   10 VDFYHADRTAEEKSRVHREWSAGRIHLICATIAFGMGINKPDVRYVIHHSMPKTLTHFYQESGRAGRDGGEAKCIVFFAYRDKARLE 270
            V +YHAD    E+ + H EW +GRI+L+CATIAFGMG++KPDVRYV+H+SMPK++TH+YQESGRAGRDG  A CI+F+AY+DK  LE
Sbjct:   94 VSYYHADLEIHERQKRHHEWLSGRINLLCATIAFGMGVDKPDVRYVMHYSMPKSITHYYQESGRAGRDGDPADCILFYAYKDKKILE 180
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13195.1904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L064_9PHAE4.950e-5594.44DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FR28_ECTSI1.320e-5194.44DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A7S3HHE6_9STRA9.830e-3768.60ATP-dependent DNA helicase (Fragment) n=1 Tax=Spum... [more]
A0A836CQM3_9STRA1.210e-3669.15DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A482RQR6_9ARCH7.320e-3668.60RecQ family ATP-dependent DNA helicase (Fragment) ... [more]
A0A7S4EMT8_9STRA1.070e-3565.52DNA helicase n=1 Tax=Pseudo-nitzschia australis Ta... [more]
B7FSW6_PHATC2.090e-3563.33ATP-dependent DNA helicase (Fragment) n=1 Tax=Phae... [more]
A0A7S0KZB9_9STRA3.180e-3565.48DNA helicase (Fragment) n=1 Tax=Asterionellopsis g... [more]
A0A1E7EUD2_9STRA3.710e-3564.37DNA helicase n=1 Tax=Fragilariopsis cylindrus CCMP... [more]
A0A7S3VCC4_9STRA7.140e-3565.52ATP-dependent DNA helicase n=1 Tax=Chaetoceros deb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13195contigS-dermatodea_contig13195:32..2192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue4.9e-44
Seed eggNOG ortholog2880.D7FR28
KEGG koko:K03654,ko:K10901
KEGG Pathwayko03018,ko03440,ko03460,map03018,map03440,map03460
KEGG ModuleM00295,M00414
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924276.7046676-CDS-S-dermatodea_contig13195:31..1831622924276.7046676-CDS-S-dermatodea_contig13195:31..183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13195 32..183 -
1694079144.3403635-CDS-S-dermatodea_contig13195:31..1831694079144.3403635-CDS-S-dermatodea_contig13195:31..183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13195 32..183 -
1622924276.715189-CDS-S-dermatodea_contig13195:2074..21921622924276.715189-CDS-S-dermatodea_contig13195:2074..2192Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13195 2075..2192 -
1694079144.3513577-CDS-S-dermatodea_contig13195:2074..21921694079144.3513577-CDS-S-dermatodea_contig13195:2074..2192Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13195 2075..2192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13195.1904.1prot_S-dermatodea_contig13195.1904.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13195 32..2192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13195.1904.1

>prot_S-dermatodea_contig13195.1904.1 ID=prot_S-dermatodea_contig13195.1904.1|Name=mRNA_S-dermatodea_contig13195.1904.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
RFRVDFYHADRTAEEKSRVHREWSAGRIHLICATIAFGMGINKPDVRYVI
HHSMPKTLTHFYQESGRAGRDGGEAKCIVFFAYRDKARLE
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mRNA from alignment at S-dermatodea_contig13195:32..2192-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13195.1904.1 ID=mRNA_S-dermatodea_contig13195.1904.1|Name=mRNA_S-dermatodea_contig13195.1904.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2161bp|location=Sequence derived from alignment at S-dermatodea_contig13195:32..2192- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTTTCGGGTGGACTTCTACCACGCGGATCGCACGGCTGAGGAGAAATC
GAGGGTGCACCGCGAGTGGAGCGCCGGGCGGATTCACCTCATCTGCGCCA
CGATCGCTTTCGGCATGGGTGAGAAAAATTGGTCTCTTGCCTGTTTTTTT
TCTTTAATATGAACCCTTTCGGTACTAATAAATTAGTATTAATAATTAAT
AGGGCTCCTGATCGACCAAGAACTCTCTCAATGCCAGTCGACAGCTACAA
TCCCGTTTCCCTTGCGCTCCGTTCTCTCTCATTCCTGCGTCATAACCCAT
GGAGTTCCCGAGGGCCCCGCTTCAAGCACGCCTCATTACATTCTAACAGG
CGCTCCAAACAGGGGGCTAGTACCAAAAGGGTTAAAGATACAGAAAGCAG
GAAGTGTACAATCCTTAATTCATCGAAACAGGACCCGGGTGGACTTTGCT
GTACACAAAACTGAGGCGATTGAATTCATCGGCCGGCTGAAAGAAAACGT
CCTTCGTAGAACAGGGGTCAGGCCGAGGCCCCACGTGCAACACTTGGTTC
AGCAGGACGTACCCCGGCAGTTTGAACTGCCGCAGCTTGTCGACGAACCG
TCAGTCATTATTCTGGGTGGCAGGACGTAAATGTGGTATTTCTGTTTTGT
CAACCTCCATCCGTGATTGTATTTTGCGTCTTATTTTATGTCAAAGATTT
TCGAAGTGTGGCACAGCAAAGGATTGTTTTTTTTTCTGCTTCTCCATTCT
TCGTGAGTGCAGGTCGCTTGGCGTCGTCGGTGAATAAAGCCGCGCTCACT
GCTGTAGAATTTTCTTGGGTCTTTCATGTTCTTCGTCGCTGGTCAGACTT
TTGTTTTTAGTTTTTTTTAAATGCGTTTTTTTACGTAACGGTTGCCAGAC
TCGATAAGGACGATCGCGGGTGCGATGATCCCTTCCTGTAGGAGAAGGGG
GCGTTTTTGTTTTGTTTTAGTAGGCCCAAGTTCCGAGGTATGTCGCCTCT
GTTTCCGAGAGTTTTGGGTCAATTCCTTCGTAGTATGTACCTGGTACTAT
ATTGGTAGAGCTTCCGTAGGGTTTTTTGGGTCTGTCGGTGTCTCATCGGA
CCACGAGCGGGATCGGCAACCATGGGTAGGCCGGTCGGCTGTAAGCGTGA
TGACCGACAAATCAATCGATCAAACCAAGAGTGTTCTGAAAGGGATACGT
AATGCGCAGAGTGTGCCGTAGAGGCAGCTGTAGCCCTGCTGTCTCCCAGA
ATGGTAACACAAGGGGTACGTATATTATATGTCTTGGTCGGGTCTTCTTC
GCCCACGTAGGCCATACGACGGTTACATGAAAAACGCCTCCGTTTATAGT
GCAACTCTTGACACTTTCACCTCAAGTTCACCTGTCCTGCGTTTGTATGC
CCTCTCTCGGGTTGTTCTCCTGACCTTCGCCACGGATCGTGGCCGGACTC
GACGCGAATGAGGTCATGCGTGGCAATCACTCAATCAACCGACCAATCCA
TCGATCGATCTGGAGCTAGCTGTCGCAGAATTTTCATGAACAGACACGCT
TCGTGTGGGCGAAATCAACTTTCCTTTTTGTTTTATTTTGGTGGGGGGGG
GGGGGAAAGGGGGGGGCGGGGCTCACATGGAGCTTGCATGGACCACGCCT
CCCCGCACCGGCGGCGACCAAAAGATTCCGCCCGTCGTTGCGGCTATGTT
TTAGAAAAACCGACACCTTGAGTTCGCTCGAAAGCCATGCACAACGGAGA
CTCGGTGGCCGGATGGAACACCAATCCCCTTCCCCTCCCCTCGCCACCCT
TGTCAGAGCAGTAAGGAACGACTGACCGTCGGCGATAGGTCGACCCTGCG
GGAGCAACGCTCCGTCCTCTCGAGGACGCGCCGTCAATGGTTTAACAGCT
AAGGCATGCAAAACATGAGTACCCCCTCCCCCCCACCCGCACGGCCTAAC
AGCAAAATCCATGCAAGACTTGAGTACGCCCTTCCCCCTCCCACCCCCCC
CCATCGCAGGCATCAACAAGCCGGATGTGCGTTACGTCATCCACCACTCC
ATGCCGAAAACACTGACCCACTTCTACCAGGAGTCTGGACGGGCAGGAAG
GGACGGCGGTGAGGCGAAGTGCATCGTCTTCTTCGCTTACCGCGACAAGG
CTCGCCTTGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13195:32..2192-

>mRNA_S-dermatodea_contig13195.1904.1 ID=mRNA_S-dermatodea_contig13195.1904.1|Name=mRNA_S-dermatodea_contig13195.1904.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig13195:32..2192- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTTTCGGGTGGACTTCTACCACGCGGATCGCACGGCTGAGGAGAAATC
GAGGGTGCACCGCGAGTGGAGCGCCGGGCGGATTCACCTCATCTGCGCCA
CGATCGCTTTCGGCATGGAGGTTTCGGGTGGACTTCTACCACGCGGATCG
CACGGCTGAGGAGAAATCGAGGGTGCACCGCGAGTGGAGCGCCGGGCGGA
TTCACCTCATCTGCGCCACGATCGCTTTCGGCATGGGCATCAACAAGCCG
GATGTGCGTTACGTCATCCACCACTCCATGCCGAAAACACTGACCCACTT
CTACCAGGAGTCTGGACGGGCAGGAAGGGACGGCGGTGAGGCGAAGTGCA
TCGTCTTCTTCGCTTACCGCGACAAGGCTCGCCTTGAGGCATCAACAAGC
CGGATGTGCGTTACGTCATCCACCACTCCATGCCGAAAACACTGACCCAC
TTCTACCAGGAGTCTGGACGGGCAGGAAGGGACGGCGGTGAGGCGAAGTG
CATCGTCTTCTTCGCTTACCGCGACAAGGCTCGCCTTGAG
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