mRNA_S-dermatodea_contig13162.1891.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig13162.1891.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 1.140e-17 Identity = 53/108 (49.07%), Postives = 68/108 (62.96%), Query Frame = 1
Query: 1 GRGRCLDAFIVALGQISAGQ---WYVSTMQLQLASLQFCRACRRLPTLQMTVVKDTPRHLWAP---EAATEVPAR--CGATRVPPIRAHFLRWSLSSKLLPQVEGSEL 300
GR CL AFIVAL Q GQ WY ST++LQL SL+FC ACRR+PTL + V + TPR LW+P A T+ +R C + RVP ++A L W+L ++L Q EL
Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVEL 120
BLAST of mRNA_S-dermatodea_contig13162.1891.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 1.510e-17 Identity = 57/143 (39.86%), Postives = 77/143 (53.85%), Query Frame = 1
Query: 1 GRGRCLDAFIVALGQISAGQWYVSTMQLQLASLQFCRACRRLPTLQMTVVKDTPRHLWAPEAATEVPA---RCGATRVPPIRAHFLRWSLSSKLLPQVEGSELLRDVQRLHLG--WNGTINK-VAWPQKLKKLELTGRFHAAV 411
G RCLDA I+AL Q S G+WY STMQLQLASL+ C +CR + L++ V TP LW A T R TRVP +RA + W L L + G + +V LG ++ + + + WP+KL L L F+ +V
Sbjct: 8 GPSRCLDALIIALNQASGGEWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTG-DAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLLGLGPGFNRSV 149
BLAST of mRNA_S-dermatodea_contig13162.1891.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 3.750e-16 Identity = 55/145 (37.93%), Postives = 71/145 (48.97%), Query Frame = 1
Query: 1 GRGRCLDAFIVALGQISAG---QWYVSTMQLQLASLQFCRACRRLPTLQMTVVKDTPRHLWAPEAATEVPARCGA-----TRVPPIRAHFLRWSLSSKLLPQVEGSELLRDVQRLHLGWN---GTINKVAWPQKLKKLELTGRFH 402
G R DAF +AL Q G +WY ST +LQL SL CRACR PTL + V TP LW+P +P + +RVP +RA L W+ S + L Q EL +RL + ++ V WP L +L L FH
Sbjct: 5 GYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVWPLGLTQLVLDTDFH 149
BLAST of mRNA_S-dermatodea_contig13162.1891.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 7.040e-16 Identity = 59/145 (40.69%), Postives = 78/145 (53.79%), Query Frame = 1
Query: 1 GRGRCLDAFIVALGQISAGQ-WYVSTMQLQLASLQFCRACRRLPTLQMTVVKDTPRHLWAPEAAT----------EVPARCGATRVPPIRAHFLRWSLSSKLLPQVEGSELLRDVQRL-----HLGWNGTINKVAWPQKLKKLEL 387
G +CL+AF+VAL G+ WY ST QLQLASL C+ACR +PTL ++V + TP +LWA EAA + PA TRVPP + W L ++ L EL +VQ L H W + +WP LK+L+L
Sbjct: 8 GDSQCLEAFVVALDLTCDGEKWYASTQQLQLASLDLCKACRGVPTLALSVERSTPEYLWA-EAARGPRGRLTGEKKPPAARTRTRVPPFGPRRVMWKLRARELGLAR-KELWANVQCLLFTGYHNDW--VCDGFSWPTGLKRLDL 148
BLAST of mRNA_S-dermatodea_contig13162.1891.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 1.400e-15 Identity = 55/143 (38.46%), Postives = 75/143 (52.45%), Query Frame = 1
Query: 1 GRGRCLDAFIVALGQISAGQWYVSTMQLQLASLQFCRACRRLPTLQMTVVKDTPRHLWAPEAATEVPA---RCGATRVPPIRAHFLRWSLSSKLLPQVEGSELLRDVQRLHLG--WNGTINK-VAWPQKLKKLELTGRFHAAV 411
G RCLDA I+AL Q S G+WY STMQLQL SL+ C ACR + L++ V TP LW A T R TRVP +RA + W L L + G + +V LG ++ + + + WP+KL + F+ +V
Sbjct: 39 GPSRCLDALIIALNQASGGEWYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTG-DAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLFGVGPGFNRSV 180
BLAST of mRNA_S-dermatodea_contig13162.1891.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 2.990e-15 Identity = 56/134 (41.79%), Postives = 72/134 (53.73%), Query Frame = 1
Query: 1 GRGRCLDAFIVALGQISAGQ-WYVSTMQLQLASLQFCRACRRLPTLQMTVVK-DTPRHLWAPEAATEVPARCGATR-----VPPIRAHFLRWSLSSKLLPQVEGSELLRDVQRLHLGWNGTINKVAWPQKLKKL 381
G GRCL+AF VAL G WY ST +LQLASLQFC CR++P+L + V P LW AATE AR GA R VP R + W + LL + + V+R + + ++ V WP +LKKL
Sbjct: 3 GPGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATE--ARTGAKRPSTTPVPVFRPREVTWGRPAWLLSDI--CLVFAKVERFLVRQDTVVDDVVWPCRLKKL 132
BLAST of mRNA_S-dermatodea_contig13162.1891.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 3.050e-15 Identity = 54/144 (37.50%), Postives = 75/144 (52.08%), Query Frame = 1
Query: 1 GRGRCLDAFIVALGQISAGQ---WYVSTMQLQLASLQFCRACRRLPTLQMTVVKDTPRHLWAPEAATEVPAR-----CGATRVPPIRAHFLRWSLSSKLLPQVEGSE----LLRDVQRLHLGWNGTINKVAWPQKLKKLELTGR 396
G G LD IVAL Q GQ WYVST++LQL SL+ C ACR L + V +DTP LW+ + P++ C + RVP ++A W+L LPQ +E R +Q H + ++ V WP+ LK+L + R
Sbjct: 85 GGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGH-SFAASVESVVWPESLKRLVFSRR 227
BLAST of mRNA_S-dermatodea_contig13162.1891.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 3.240e-15 Identity = 52/138 (37.68%), Postives = 73/138 (52.90%), Query Frame = 1
Query: 1 GRGRCLDAFIVALGQISAGQ---WYVSTMQLQLASLQFCRACRRLPTLQMTVVKDTPRHLWAPE-----AATEVPARCGATRVPPIRAHFLRWSLSSKLLPQVEGSELLRDVQRLHLGWNGT---INKVAWPQKLKKL 381
G +CLDAF+VAL Q GQ WYVST++LQL SL+ C ACRR+ TL + V TP LW P P C ++RVP ++A L W+L +L Q +E+ + + + WPQ+LK++
Sbjct: 5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRM 142
BLAST of mRNA_S-dermatodea_contig13162.1891.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 7.670e-15 Identity = 54/130 (41.54%), Postives = 74/130 (56.92%), Query Frame = 1
Query: 10 RCLDAFIVALGQISAG---QWYVSTMQLQLASLQFCRACRRLPTLQMTVVKDTPRHLWAPEAATEVPARCGATRVPPIRAHFLRWSLSSKLLPQVEGSELLRDVQRLHLGWN---GTINKVAWPQKLKKL 381
RCLDAF+VAL Q G +WY ST+QLQLASL+FC ACR P L + V +TP LW+ A P +TRVP ++A L W+ ++ SEL ++ L L + ++ V WPQ L++L
Sbjct: 8 RCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQAN--PTAGTSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQRL 135
BLAST of mRNA_S-dermatodea_contig13162.1891.1 vs. uniprot
Match: A0A6H5K4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H1_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 7.960e-15 Identity = 58/139 (41.73%), Postives = 71/139 (51.08%), Query Frame = 1
Query: 10 RCLDAFIVALGQ--ISAGQWYVSTMQLQLASLQFCRACRRLPTLQMTVVKDTPRHLWAPEAATEV------PARCGATRVPPIRAHFLRW------SLSSKLLPQVEGSELLRDVQRLHLGWNGTINKVAWPQKLKKLE 384
RCL+AF VAL Q + WYVST QLQLASL FC ACR TL +TV PR L A E P +CG +RVP A + W LS+ + E + D G+N I VAWP+KL++LE
Sbjct: 29 RCLEAFRVALQQTCLDRESWYVSTTQLQLASLPFCLACRDSVTLCLTVDDSIPRRLLADVGGNEAVVAPAGPCQCGRSRVPRFHAREVTWHRQSCVELSASIYALAEVDFFILDG-----GFNRAIGAVAWPRKLRRLE 162 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13162.1891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig13162.1891.1 >prot_S-dermatodea_contig13162.1891.1 ID=prot_S-dermatodea_contig13162.1891.1|Name=mRNA_S-dermatodea_contig13162.1891.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=557bp GRGRCLDAFIVALGQISAGQWYVSTMQLQLASLQFCRACRRLPTLQMTVVback to top mRNA from alignment at S-dermatodea_contig13162:4925..6595- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig13162.1891.1 ID=mRNA_S-dermatodea_contig13162.1891.1|Name=mRNA_S-dermatodea_contig13162.1891.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1671bp|location=Sequence derived from alignment at S-dermatodea_contig13162:4925..6595- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig13162:4925..6595- >mRNA_S-dermatodea_contig13162.1891.1 ID=mRNA_S-dermatodea_contig13162.1891.1|Name=mRNA_S-dermatodea_contig13162.1891.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3342bp|location=Sequence derived from alignment at S-dermatodea_contig13162:4925..6595- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |