mRNA_S-dermatodea_contig1316.1889.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1316.1889.1
Unique NamemRNA_S-dermatodea_contig1316.1889.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1316.1889.1 vs. uniprot
Match: D7FX50_ECTSI (ApaG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX50_ECTSI)

HSP 1 Score: 517 bits (1332), Expect = 9.840e-178
Identity = 294/419 (70.17%), Postives = 331/419 (79.00%), Query Frame = 2 
Query:  437 LALACLVLLSAPRPADGFFRPSTRVKAPPAGPKSLSSLPQGRQQLRP---PA---IFRVRQP-----EDEGAGAAGRP-LPLLVMSGTDEGAEDESEGVEEEEG----EDDGIQMPAIELPEMMSDEDRTRLWMAVSRTEAAALRLERQGETEEAAQLRERANAMRYEDPYTALQDELDEAVKNEASFVKIARLRLQMGRIGVPPNAEMQARAEGKDPSSVAKETARQMPGMSSRESERGSASGARGDGSTVSDGYSSKSDTTTHGVRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAIEATEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPITCAPKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILPQSVLDERAGGRGGSGPAGGGDMAGNNW 1645
            LALACLVLLSAP P+DGFFRP   +K P  G   ++  P+  ++  P   PA     R   P     ++ G+  +G   +PLLVM G+   +E E E           ++DG+Q+P +E+PEMMS+E+RTRLWM VSR E  A++LERQGETEEA + R+RA  MRYEDPYTALQDELDEA+KNE  FVKIARLRLQM +IGVPPNAEMQARAEGKDPS+VA+ET ++MPGMS R SE+ S SG R DGST +DGYSSKS TTT+G+RVEVRSQYYPEQSNPLKDQYIFVYKVKITNQS QTVQLVSRTWEIKAIEATEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPITCAPKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILPQ+VLDERAG           DMAGNNW
Sbjct:   34 LALACLVLLSAPVPSDGFFRPRPNIKEPGLGDNGVNVFPRNTRRPAPLCDPAGDGALRATVPMMPSHQERGSSCSGPTRMPLLVMLGSAGESEFEKEXXXXXXXXXXXQEDGVQLPTVEVPEMMSEEERTRLWMGVSRAELQAVKLERQGETEEAEKFRQRAKEMRYEDPYTALQDELDEAIKNE-EFVKIARLRLQMTKIGVPPNAEMQARAEGKDPSAVAEETMKRMPGMS-RGSEKSSRSGRRSDGSTETDGYSSKSVTTTNGIRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSSQTVQLVSRTWEIKAIEATEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPITCAPKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILPQAVLDERAGXXXXXXXX---DMAGNNW 447
[Close]
BLAST of mRNA_S-dermatodea_contig1316.1889.1 vs. uniprot
Match: A0A835ZBY5_9STRA (ApaG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY5_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.610e-58
Identity = 130/301 (43.19%), Postives = 180/301 (59.80%), Query Frame = 2 
Query:  716 DDGIQMPAIELPEM-MSDEDRTRLWMAVSRTEAAALRLERQGETEEAAQLRERANAMRYEDPYTALQDELDEAVKNEASFVKIARLRLQMGRIGVPPNAEMQARAEGK-----DPS-----SVAKETARQMPGMSSRESERGSASGARGDGSTVSDGYSSKSDTTTHGVRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAIEATE---APQLVKGPGVVGQQPVLEPGQSFEYSSACPITCAPKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILPQSVL 1576
            D+ IQ+P I  PE+ M+ E+R  LW  +  +E        + +   A QLR R  A++ +DPY AL++ +D A+  E  +   A+ +LQ+ ++G PP   +++ A G       P+     S A+                                YS++S+T THGVRVEVR+QY+PEQS+P K Q++FVY+V++TN S  TVQL +R W I+   A     A Q VKGPGVVGQQPVLEPGQSFEYSSACP+   P++  +VL RM+G++ +V GAVGE  FEAKIDPFYLILP+SV+
Sbjct:   30 DEPIQLPEIVAPELSMTAEERVVLWEEICASEPRLQLAIEEQDFGTAEQLRNRITALKAQDPYFALREAIDSALARE-DYYSAAKFKLQLDKLG-PPQTILESVANGSRRVDMSPTINQAVSAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYSTRSETETHGVRVEVRAQYFPEQSDPAKAQFVFVYRVRVTNASRATVQLAARRWHIRTANAKTGKTAVQEVKGPGVVGQQPVLEPGQSFEYSSACPVFQRPRDSVRVLARMEGAFTMVTGAVGERGFEAKIDPFYLILPESVV 328
[Close]
BLAST of mRNA_S-dermatodea_contig1316.1889.1 vs. uniprot
Match: H6WBA4_VAULI (ApaG domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA4_VAULI)

HSP 1 Score: 202 bits (514), Expect = 9.400e-57
Identity = 134/297 (45.12%), Postives = 185/297 (62.29%), Query Frame = 2 
Query:  725 IQMPAIELPEM-MSDEDRTRLWMAVSRTEAAALRLERQGETEEAAQLRERANAMRYEDPYTALQDELDEAVKNEASFVKIARLRLQMGRIGVPPNAEMQARAEGKDPSSVAKETARQMPG---MSSRESERGSASGARGDGSTVS-DG----YSSKSDTTTHGVRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAIEA----TEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPITCAPKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILPQSVL 1576
            I++P IE+PEM M+  +R  LW  ++  E         GE + A  L+ + + ++  +PY  L +++  A++ ++ F   A+ +LQM +IGVP   E     + K  +    ET +Q      MS   SE  + +  +  G+ VS DG    YS+KS T+T+ V VEV SQY+ EQSNP K +YIF+Y+V ITN SP TVQLVSR W+I+ I      TE  Q V GPGVVGQQP+LEPGQ FEY+SACPIT  PK+  +VLGRM+G YL+V G+ G+  F+AKI+PFYLILP  V+
Sbjct:   36 IKLPEIEVPEMKMTSVERLSLWEQINVLEPELKNAVESGEKDYAELLKSKISDLKASEPYFTLHEKMKMALE-KSDFSGAAKYKLQMDKIGVPK--EFLDGVKNKTRNVDGSETVKQAVTSALMSKEASEAANQTEVQNSGTFVSEDGEQIVYSAKSMTSTNRVDVEVVSQYFREQSNPTKHRYIFLYRVAITNNSPFTVQLVSRKWQIRTINPNTNKTEV-QEVSGPGVVGQQPILEPGQIFEYNSACPITQKPKDNIRVLGRMEGCYLMVTGSNGQHYFQAKINPFYLILPPDVM 328
[Close]
BLAST of mRNA_S-dermatodea_contig1316.1889.1 vs. uniprot
Match: A0A835YH08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH08_9STRA)

HSP 1 Score: 175 bits (443), Expect = 4.280e-46
Identity = 116/317 (36.59%), Postives = 175/317 (55.21%), Query Frame = 2 
Query:  716 DDGIQMPAIELPEM-MSDEDRTRLWMAVSRTEAAALRLERQGETEEAAQLRERANAMRYEDPYTALQDELDEAVKNEASFVKIARLRLQMGRIGVPPNAEMQARAEGKDPSSVAKETARQMPGMSSRESERGSASGARGDGSTVSDG--------------YSSKSDTTTHGVRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAIEATE---APQLVKGPGVVGQQPVLEPGQSFEYSSACPIT--------------CAPKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILPQS 1570
            D+  ++P I  PEM +++++R  LW  +   E A  R     +   A  LR+R + ++ +DPY AL++  + ++  +  +   A+ +LQ+ R+G PP A ++  + G +   +       +    S  +                                YS++S+  THGVRV VR+QY+PEQS+P + Q++FVY+V++TN+S  TVQL +R W I+ ++A     A Q V+GPGVVGQQPVLEPGQSFEYSSACP+                      +VLGRM+G++ +V GAVGE  FEAKI+PF+LILP S
Sbjct:   45 DEPTKIPEISDPEMSLTEDERLSLWEQLCSLEPAMQRALEAEDFSTAELLRDRISLLKAQDPYFALRESFETSLARD-DYYSAAKCKLQLDRLG-PPAALLERVSRGYNDVEMGPSVRAAVEAAQSALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVYSTRSEAVTHGVRVAVRAQYFPEQSDPARRQFVFVYRVRVTNESRATVQLAARRWLIRTLDAKTGRTAQQEVRGPGVVGQQPVLEPGQSFEYSSACPVVRGXXXXXXXXXXXXXXXXAALRVLGRMEGAFTMVTGAVGERGFEAKIEPFHLILPAS 359
[Close]
BLAST of mRNA_S-dermatodea_contig1316.1889.1 vs. uniprot
Match: A0A7S0MN03_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MN03_9CRYP)

HSP 1 Score: 145 bits (366), Expect = 1.800e-35
Identity = 105/277 (37.91%), Postives = 145/277 (52.35%), Query Frame = 2 
Query:  758 MSDEDRTRLWMAVSRTEAAALRLERQGETEEAAQLRERANAMRYEDPYTALQDELDEAVKNEASFVKIARLRLQMGRIGVPPNAEMQARAEGKDPSSVAKETARQMPGMSSRESERGSASGARGDGSTVSDGYSSKSDTTTHGVRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKA--IEATEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPITC-----APKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILPQ 1567
            MS EDR  LW  V   E          E  +AA +R+R  +++  DPY A +D ++ ++  E  + + AR R +M  +G PP         GK  SSV        P +    S  G            SDG SS SD TT GVRV+  S Y PEQS+P   ++IF Y + I N   +T QLVSR W+I+   +  TE    V G GVVG+QPVLEPG++F Y+SACP+       A    ++ LG M+GSYL+V G +G+  F  ++ PF  +LP+
Sbjct:   85 MSKEDRITLWAEVEEMETKLQEAIDSEEYSQAATIRDRIKSLKLRDPYAAAKDYMERSIAEE-KYEEAARWRNKMNEVGEPPQKP------GKGSSSV--------PYVGEGASPTGG-----------SDGVSS-SDITTLGVRVQATSFYIPEQSSPSDGRFIFGYNITIFNGGSKTCQLVSRNWQIRTAPLGLTEE---VSGSGVVGRQPVLEPGEAFMYTSACPLAVDAEYLARLPPHRSLGSMEGSYLMVAGPLGQEVFAVRVAPFGFVLPR 331
[Close]
BLAST of mRNA_S-dermatodea_contig1316.1889.1 vs. uniprot
Match: R7QG52_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG52_CHOCR)

HSP 1 Score: 133 bits (335), Expect = 2.800e-31
Identity = 70/133 (52.63%), Postives = 87/133 (65.41%), Query Frame = 2 
Query: 1166 SDTTTHGVRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAIEATEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPITCAPKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILP 1564
            S T T G+ V V S Y PEQS P + +++F YKV ITN+  +T QLVSR W I +   +E+   VKGPGVVG+QPVLEPG+SFEY+SACP+T + K G  V+G MKG Y    G  G+  F   I  FYL LP
Sbjct:  173 SKTKTAGIVVHVESYYMPEQSLPEQSRFLFGYKVTITNEGNETCQLVSRHWTINSSGGSESE--VKGPGVVGRQPVLEPGESFEYNSACPVTVSLKGGQSVVGNMKGKYHFCKGDTGDVKFSVDIATFYLKLP 303
[Close]
BLAST of mRNA_S-dermatodea_contig1316.1889.1 vs. uniprot
Match: A0A7S4D4Z3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4Z3_HETAK)

HSP 1 Score: 127 bits (320), Expect = 3.640e-29
Identity = 92/287 (32.06%), Postives = 138/287 (48.08%), Query Frame = 2 
Query:  755 MMSDEDRTRLWMAVSRTEAAALRLERQGETEEAAQLRERANAMRYEDPYTALQDELDEAVKNEASFVKIARLR---------LQMGRIGVPPNAEMQ-ARAEGKDPSSVAKETARQMPGMSSRESERGSASGARGDGSTVSDGYSSKSDTTTHGVRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAIEATEA--PQLVKGPGVVGQQPVLEPGQSFEYSSACPITCAPKEGY--QVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILPQSV 1573
            MM    R +LW  + + ++   +L +  + E+   LRE+   ++ EDPY ALQ ++D+A+  ++  + + + R         L    +G+     +Q A A    P  +    A   P  +   SE                          HGVRVE RS Y   +S+P    Y+F+Y++++TN   +  QLV R W I+         P++VKGPGVVGQQPVL PGQ+FEY+SACP+  A  +    +  G M G Y  V GA GE  FE  + PF  +LP  +
Sbjct:   67 MMGQLKRLKLWEEIGQIQSQLDQLPKDQQPED---LREKIEMLKLEDPYIALQKKMDDAITEQSEKINLKQWRDRDFDRTQFLDNHLLGLTEAGALQDALAAAGLPPPLRGAVAEADPRRACSSSEE-------------------------HGVRVEARSFYSRSRSDPASGLYLFLYQIRLTNVGREACQLVRREWRIEPAGGAGGGRPEVVKGPGVVGQQPVLLPGQAFEYASACPLRSAAPQQLPDRCAGGMGGRYFFVSGATGENEFEVLVAPFSFLLPPEL 325
[Close]
BLAST of mRNA_S-dermatodea_contig1316.1889.1 vs. uniprot
Match: A0A7Y4WGJ2_9BACT (Protein ApaG n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4WGJ2_9BACT)

HSP 1 Score: 119 bits (298), Expect = 5.350e-28
Identity = 63/137 (45.99%), Postives = 87/137 (63.50%), Query Frame = 2 
Query: 1163 KSDTTTHGVRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAIEATEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPITCAPKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILPQSV 1573
            +SD TT G+RVEV S Y PE+S+P + QY+F Y V+++N   +T QLVSR W I   E     + VKGPGVVG+QPVL PG +FEY+S CP+  A       +G M G+Y +V     +  F+A+I PF L +P ++
Sbjct:   26 RSDATTRGIRVEVTSNYLPERSSPRESQYLFAYHVRVSNVGTETAQLVSREWIITTAEGDV--ERVKGPGVVGEQPVLPPGAAFEYTSYCPLKTA-------VGSMHGNYQMV--TTDDERFDAQIAPFTLAIPNAL 151
[Close]
BLAST of mRNA_S-dermatodea_contig1316.1889.1 vs. uniprot
Match: A0A1F2QSD2_9BACT (Protein ApaG n=1 Tax=Acidobacteria bacterium RBG_16_70_10 TaxID=1797174 RepID=A0A1F2QSD2_9BACT)

HSP 1 Score: 117 bits (294), Expect = 9.280e-28
Identity = 64/136 (47.06%), Postives = 86/136 (63.24%), Query Frame = 2 
Query: 1166 SDTTTHGVRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAIEATEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPITCAPKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILPQSV 1573
            SDTTT GVRV+VRS Y PE+S+P    Y F Y+V+I+N    TVQLVSR W I      E  + V+GPGVVG+QPVL P ++FEY+S CP+          +G M+G+Y +V  +     F+A I PF L++P +V
Sbjct:    2 SDTTTRGVRVQVRSAYVPERSSPRDSHYFFAYRVRISNVGEDTVQLVSREWIISDGNGNE--ERVRGPGVVGEQPVLAPNEAFEYTSFCPLRTP-------IGAMRGTYQMV--SASGTRFDAVIAPFSLVVPTAV 126
[Close]
BLAST of mRNA_S-dermatodea_contig1316.1889.1 vs. uniprot
Match: A0A7V8XSG4_9BACT (Protein ApaG n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V8XSG4_9BACT)

HSP 1 Score: 117 bits (294), Expect = 1.040e-27
Identity = 62/136 (45.59%), Postives = 89/136 (65.44%), Query Frame = 2 
Query: 1166 SDTTTHGVRVEVRSQYYPEQSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAIEATEAPQLVKGPGVVGQQPVLEPGQSFEYSSACPITCAPKEGYQVLGRMKGSYLIVMGAVGEAAFEAKIDPFYLILPQSV 1573
            S+  T GVRV+V SQ+ PE+S P ++Q+ F+Y + I N+ P TVQL++R W I   + T A + V+GPGVVG+QP+L+PG+SFEY+S CP+  A        G M+G+Y +V    G   F+AK+ PF L  P +V
Sbjct:    6 SEAVTRGVRVQVESQFDPERSEPSRNQWFFLYSITIANEGPDTVQLLTRHWIIT--DGTGAVEEVRGPGVVGKQPILKPGESFEYTSGCPLATA-------FGLMEGTYQMV--TEGGERFDAKVAPFTLSEPYTV 130
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1316.1889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX50_ECTSI9.840e-17870.17ApaG domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZBY5_9STRA1.610e-5843.19ApaG domain-containing protein n=1 Tax=Tribonema m... [more]
H6WBA4_VAULI9.400e-5745.12ApaG domain-containing protein n=1 Tax=Vaucheria l... [more]
A0A835YH08_9STRA4.280e-4636.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0MN03_9CRYP1.800e-3537.91Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
R7QG52_CHOCR2.800e-3152.63Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S4D4Z3_HETAK3.640e-2932.06Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7Y4WGJ2_9BACT5.350e-2845.99Protein ApaG n=1 Tax=Acidobacteria bacterium TaxID... [more]
A0A1F2QSD2_9BACT9.280e-2847.06Protein ApaG n=1 Tax=Acidobacteria bacterium RBG_1... [more]
A0A7V8XSG4_9BACT1.040e-2745.59Protein ApaG n=1 Tax=Acidobacteria bacterium TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1316contigS-dermatodea_contig1316:5242..20604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score523.9
Seed ortholog evalue7.5e-146
Seed eggNOG ortholog2880.D7FX50
KEGG koko:K06195
EggNOG free text desc.mitochondrion morphogenesis
EggNOG OGsCOG2967@1,KOG4408@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionApaG domain
Ec32 orthologEc-10_004320.1
Exons7
Model size1649
Cds size1326
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924275.649696-UTR-S-dermatodea_contig1316:5241..55631622924275.649696-UTR-S-dermatodea_contig1316:5241..5563Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1316 5242..5563 +
1694079143.6095665-UTR-S-dermatodea_contig1316:5241..55631694079143.6095665-UTR-S-dermatodea_contig1316:5241..5563Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1316 5242..5563 +
1622924275.732364-UTR-S-dermatodea_contig1316:20603..206041622924275.732364-UTR-S-dermatodea_contig1316:20603..20604Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1316 20604..20604 +
1694079143.7339518-UTR-S-dermatodea_contig1316:20603..206041694079143.7339518-UTR-S-dermatodea_contig1316:20603..20604Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1316 20604..20604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924275.6618783-CDS-S-dermatodea_contig1316:5563..60101622924275.6618783-CDS-S-dermatodea_contig1316:5563..6010Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 5564..6010 +
1694079143.6287525-CDS-S-dermatodea_contig1316:5563..60101694079143.6287525-CDS-S-dermatodea_contig1316:5563..6010Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 5564..6010 +
1622924275.677925-CDS-S-dermatodea_contig1316:13572..137521622924275.677925-CDS-S-dermatodea_contig1316:13572..13752Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 13573..13752 +
1694079143.6432483-CDS-S-dermatodea_contig1316:13572..137521694079143.6432483-CDS-S-dermatodea_contig1316:13572..13752Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 13573..13752 +
1622924275.6870613-CDS-S-dermatodea_contig1316:15496..156071622924275.6870613-CDS-S-dermatodea_contig1316:15496..15607Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 15497..15607 +
1694079143.659681-CDS-S-dermatodea_contig1316:15496..156071694079143.659681-CDS-S-dermatodea_contig1316:15496..15607Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 15497..15607 +
1622924275.695458-CDS-S-dermatodea_contig1316:16470..166011622924275.695458-CDS-S-dermatodea_contig1316:16470..16601Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 16471..16601 +
1694079143.6769602-CDS-S-dermatodea_contig1316:16470..166011694079143.6769602-CDS-S-dermatodea_contig1316:16470..16601Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 16471..16601 +
1622924275.7068996-CDS-S-dermatodea_contig1316:17622..177761622924275.7068996-CDS-S-dermatodea_contig1316:17622..17776Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 17623..17776 +
1694079143.6911726-CDS-S-dermatodea_contig1316:17622..177761694079143.6911726-CDS-S-dermatodea_contig1316:17622..17776Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 17623..17776 +
1622924275.7166233-CDS-S-dermatodea_contig1316:19868..199881622924275.7166233-CDS-S-dermatodea_contig1316:19868..19988Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 19869..19988 +
1694079143.7079253-CDS-S-dermatodea_contig1316:19868..199881694079143.7079253-CDS-S-dermatodea_contig1316:19868..19988Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 19869..19988 +
1622924275.724343-CDS-S-dermatodea_contig1316:20420..206031622924275.724343-CDS-S-dermatodea_contig1316:20420..20603Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 20421..20603 +
1694079143.7248893-CDS-S-dermatodea_contig1316:20420..206031694079143.7248893-CDS-S-dermatodea_contig1316:20420..20603Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1316 20421..20603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1316.1889.1prot_S-dermatodea_contig1316.1889.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1316 5564..20603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1316.1889.1

>prot_S-dermatodea_contig1316.1889.1 ID=prot_S-dermatodea_contig1316.1889.1|Name=mRNA_S-dermatodea_contig1316.1889.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=442bp
MNKRPATTMTSPRRRNDGARRSRGACAAAAAAAAATGTLALACLVLLSAP
RPADGFFRPSTRVKAPPAGPKSLSSLPQGRQQLRPPAIFRVRQPEDEGAG
AAGRPLPLLVMSGTDEGAEDESEGVEEEEGEDDGIQMPAIELPEMMSDED
RTRLWMAVSRTEAAALRLERQGETEEAAQLRERANAMRYEDPYTALQDEL
DEAVKNEASFVKIARLRLQMGRIGVPPNAEMQARAEGKDPSSVAKETARQ
MPGMSSRESERGSASGARGDGSTVSDGYSSKSDTTTHGVRVEVRSQYYPE
QSNPLKDQYIFVYKVKITNQSPQTVQLVSRTWEIKAIEATEAPQLVKGPG
VVGQQPVLEPGQSFEYSSACPITCAPKEGYQVLGRMKGSYLIVMGAVGEA
AFEAKIDPFYLILPQSVLDERAGGRGGSGPAGGGDMAGNNW*
back to top

mRNA from alignment at S-dermatodea_contig1316:5242..20604+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1316.1889.1 ID=mRNA_S-dermatodea_contig1316.1889.1|Name=mRNA_S-dermatodea_contig1316.1889.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=15363bp|location=Sequence derived from alignment at S-dermatodea_contig1316:5242..20604+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTAGTTGCGGTCATCTCGACTATGACCAGCTCGTCGAGTCAGATCACAG
CTTAAACCCACGCGCGTGGCGCATCGATCCATCTCTACATCTCTTCTTGT
CCGAGTCCCACAGCAGCGCAGCAGCATTCCCCACGACCACGACCCACCTA
TCAACGAAGAGCCAACCTTCAGGCGTGCCTGGCTACTGCTGCATCCACCT
TGCCGCTGCTGACACTGCTGTTTTTGCGAGAGAAGCACGCGCGAGGGCAG
CGCAGATCAAGAAGAGCAATCTCCTGGGCAGGATTGGTCGCATTTTTGGC
CCATCTACACGATACTAGAGCTATGAATAAGCGGCCTGCGACGACCATGA
CCTCCCCCCGAAGGCGCAATGACGGTGCTCGGAGAAGCAGGGGTGCCTGC
GCTGCCGCGGCTGCGGCCGCGGCCGCGACGGGGACCCTTGCTCTCGCGTG
CCTCGTCCTACTCAGCGCGCCCCGCCCAGCGGACGGCTTCTTCCGCCCAT
CGACGAGAGTAAAAGCCCCCCCCGCGGGGCCCAAGTCTCTCAGCTCTTTG
CCCCAGGGCCGGCAGCAGCTGCGACCGCCCGCGATATTTCGTGTTCGGCA
GCCGGAGGATGAGGGGGCGGGAGCGGCGGGGCGGCCGCTGCCGTTGCTGG
TGATGAGCGGGACGGATGAAGGGGCGGAGGATGAGTCTGAGGGGGTTGAG
GAAGAGGAGGGGGAGGATGATGGGATTCAGATGCCGGCGATTGAGCTCCC
TGAGATGATGAGCGATGAGGTGAGGCCGGGAGGGGGGGGGGCGGGGGGGG
GGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
CTGGGGCGCGCTCGGTGCGTGGGGTGGGGGTTGGTTGTNNNNNNNNNNGA
TAGGATCGGATCGGATCGGATGGGGGTCGGCTGCTATCTCGCCGGGGGGG
GGGGAGGTGCCTCTGGTGGTGGTGGTGATTGGGTTGGGGATGTAGTGAAT
GAGCGCTCGCGAGCTCTCTGATGAGAGACTTGATGTTGATTTTGTTGTTT
GCAGGAAGGACCCGGCCGACCGGCCCTATTTTGTCTCTTCATTTTTACTC
ATGACACTGGTCGTAGTCTATTTTGTATACAACAGACAGCTAACGTTTTT
TTGTGTTTTCGTTTTTGTGTACAAGTATGAAATCATAATTCGATCATGTT
TGATTGAGACATACCAGATACATACAGCAGTACTTACAGTATATTATAGA
GCTATTTGTTAGGCTTCACAGAGAGTAACAATCTGGATACTATTTTTATA
TGAAAAGCTTGTGCGTGCGTGTGCGTCTTGGTTTTGTTTTCCCGAAGAAG
GGAGAATGTTGATGTTTCATAACAGACTCTCAGAATGAGAGAATGAAGAA
TGAAGAGAATGGATTGATCTACTAGGTACTCGATTCGGAGCCTCTTGTTC
ATGACGGTGCGATTTGAGTCGATCGCGTGATGCAGGCTGGGACAGCTCTC
CCACTGATAAGTGCGCACCTTTGCATATCATAGCTGCTGCGCGATGTGTG
CCGCACCTCCATCAATTGTATCCCTCTGTCAATGACGATGAAGTGCTTGT
CTTCACTCAAGCCTTCCAAATACAGAGCTTATCATAGATAGACAAATAAT
ACTACTCCTGATACGAAAACATGGTAAAGGTATAATGGTATGACATCATT
CATTGGAGCCTATACAAAGCCCTAGCAGCTAGCGCCAGGCTGGAAGTGTG
GTCTCTCGCTCCACCCTTTTGCTCTTATTCTGGTATTCTCGTCATATTCG
TACATTGTACAAGCAGTACCCATAAAACCAAATGCATTGTATACTATACT
TGCACACACCGAAGACAGAGCTTCTACCAAAAATATCACTACGAGGCCCA
CAGCCTCATGTCGTCATTGTTGGGATCAGTCCTACAGCAGTACCTGAGTT
ACTTATTCCTTATTGCGGTATGATACTGTACAAGTATAGTATCATATGAC
GAGTATAATAACTATTAATACTCTCTGCGTGTCTGACCACAAGTCGGGTC
GGATTATGCCGATCGGCTATACGTGTGCAAATCAATCAAATTAATCAATC
AATGAATCAATCAAACTGTAGTATGATAGTATGATAGTAGGATACGATAC
AGTAGTGTCTATAATAGTATAATAGTATAATATTGTACGTGTACTCGTAG
TAAGTACACTACGCTTATTATCGACAGGGGGCTCCAGGAATATCATACCA
GGTAGCTCGTTACATCTGGGCCAGGTCCTGCTCTTCTTGGCTCAAGTTTA
CACCACATGAAGACCATGCCATAGACCGACCTACAGCAGCAAAACATGCT
GGCCCGTCCGTGTCGTTTACACTTTTAATACATTAATACAGCTCTACAAG
TACGCGTACACCATCGTGGCATACATCTTGTAGTGTTGAGAGTTACTGCT
TGTAAAAAGCGCAAGCTGGGTTATTTGTTATTTAGCGGTGCGTATGATGT
ATGATGCAGTCAGTGAACGTAAGCACACCACACGTCTCCCGTTAGTCTGT
CTGCCCTAGGCCCTAGGGGCTACCGTCTTAATGTGTTGGCGGTTGATTGA
TCGATTGATGGATTGATTTTAGTTGTTGATCTGCGCACGCACGATAGCCG
ATCGGCTCTTATCTGATGATACTGTAATAAAAAGTGTAGGAACTGATAGG
AACTATCATACTCGGAGTATGATATTAGGAACTGAGCCTGTTTTCCGAGT
GTACAGCGGTGCCAGATGTGTACAAATGCACCGTGCAGTCGAGCCAAGCG
TGGCCCTCGCCAGGCATTGCCTTTCGGGCTGCCGCCGCGGCCGCCGTACG
ACGGTAGAGACAACAGCAACCACCGTACGTTCTGTCGTGTAGGTACAGTA
GGTACAGCTGTAGTAGGGGTATGGTAGAACCCTGAAAACCGAACCCAATC
TCAATCTCAATCTTAATCTCAATCTCAATCTCAATCATGCGACCCGATTA
GACAACTGTAGTATACTTGTGGTCAGATGCGCGAAGAGTCAAGAAAACAC
ACAACCTATTATTTCAAGTTCACCCTCCTTGACTACTACAGTGTTTATTT
CTTTTGTTTTCAGATTTGTACTTCTATAGATACTTTGTACATACACTTGT
ATACTTTTTGCGTGTCTGACCACAAGTAGGGTCGGATTAAGCCGATACGT
GTGCAAATCAAATAAAAAAATCAATCAAATCTAAGAAATATAGTACTCTA
CAAGTATATACAGTACATAGTACAGGAATGCCGTAGAAAAAGAGTCCAGG
AAAACAAACTAGTGTACCCAGAAATCTAGTTGCAGAAATTGTGTACCAGA
AATAACGTACAACAGAGTTCGAGGAGGAAACACACCAATCAGAAATCTGC
GTTCTATAAATGCTCTATGATATCATACAGAAATGCCGTGCAAGTACTTG
CATCTGATGACGGTATGTGTGTCAGTGTGTCAGGTATGTATGATACTTTA
TCTGCGCTATGTCGTACGCATACTGTATGATGGTGGAAATGAGGAGAGGG
CTTTATTTTGGACCTACCTGGTCTGCTGTAGCGCTGTTTCATGTTCGACT
TTGCTTTGTTGTAAAGATAAGGCTTAGACCAACGAAAACCTACCCTACTG
CTGTACTCTACAACATTGCTCTGATGTGTTGTTACTTGTTCCCCAATGGT
TCGTGACTTCTCACGCCGAACTTGTCATGAAATACCATACTGTAATGTAG
GATGAGAGAAGTGTGCATGATACTGTAATATTACGGAGGTACTGTACTGT
ACACACTCATCAGGACAAAATCTCACGACCATAATTACTGTTCTAATTAC
TACAGTAATTACTAATTACGCAACTGCTGTTGTTCTGACGATGAATACTG
TACAGTACCCACATAACACCAAACACTCATGAACAAAAACTAACTATTAA
TAAACTGGAGGTCTTGACCTGTACTTGTACCACAAAGACCGACTGTTAAT
ATTAATATTATACACAATAGTTCGTTCCGGCCTAGAGTAGTAATAGAGTA
TTAGTATTAATAGAGTATTTTGTTTTTCTAAGTTGAGATTTGTGACGAAT
TTGGACCTGTTAACGTTAACTCTGGTATAGTCCTCCGAAATACTAATACT
ACTACTATAATAAATATAATATACATACCTCATACCTACGAGTTTCATAC
CTTATATGACATGATACCACAGATGATACTAATATATAACAAACAGTATT
ATAGTACACTCTGTATTTAGAAGCTCACTTGTTTCTTTTACTATACGAGT
ATAGAATAGCGCTTTATACATAGCCGCGTAGATATCCACATTTGATCGAT
TGCCCTCCGACAATTGGCAGACTCGGGATTTGGGCACACAAAGTAGTCAT
ACACGACCTCCAGGATAATGGTGTGGTACGTTGTACTTATTTCCTGTACA
TGTTTCATCCTCGCATTATAATTCCATCCTTTAACAAAACAGTCTCTCAG
CTCATATCTCCCACGGACAAAACACGCCAACTCCGTCTTCCTTCTGTCTG
TCTTTGCTTCTGCGCATCATACAGCAGTATGACACTCTCTGCTTCAACAC
ATTTATCCTCTGGTATCATATCATAGCAGGATTAATTCAAGTAGCAGCTG
ATTTAAGACTACCGGCCAAGAGCCCTCTCGTTGAAGTTGAAGTGGATTGT
ACTTTTCCTTACCGACCGAGACACCACCACGCACGCGGTCCCCGCCCTAC
CTCCCCGTCGCCGGCATTCCTTGTGCTCATCTGGTCTCCCGCCCTGTTTC
TAGATTTTTTTCTGGTCCGATGAGATAGCAAACAATACAGTAGCATGATC
CTGATGATGTCAGCCGTATGACATTTACAAAGTACTAAGTAGTACAGTGT
AATAAATTCTCCTTTTGTAGAGCTGTGATAGAGCAAGAGCATGAGAGCTA
CTTGTTTGATACTATACATGTAGCTCAAGTATACAATTTGCATCGGCTCG
ACTGAGGCGAGACGGAAATATCTTATGAGAAGTGACGTCACGTATAAAAA
GATGGCCTCAGTAGTACGTACAGTACTGGGTTTGTGTGTAGTTTAAGCGT
GTAAGCCCCGCGCTACAGAGCCATGTTCAAGTACTTGTATATCAGATATG
GTATCGTTTGAATAGACCCAACTGGGGCGAAATGGAACAAATGGTCTGCT
CAGAAATGACGTCACGTTTAAAACGCCGGCCTTTCTAGTGTCTGTAAGCC
CCGCGCGGCGTGAGCCTTGCTTGAGCCCAGGGGGCTCGCACGGCCCAGAA
TGAACGCGCAGACACCTATGTACGCCCCCCGAAAAGACGAAGATTTCAGT
AACATAGAGCGAGCGTTGGGGTCCCACCTTTTCAAGAGAGAAGATGGTCC
AAGCTACACACCTATGGAGACTCACTTGTTACATATGATGCTATGGTGTC
GTATCATATATGATTTTATATGGTTATGGTATCATACAGCCCCCCCTCCC
CCATCCCCCCCGCCCTCCATGAGGTGGTTCATGAAGTATGTCATGTGGTC
TCAGATACCTCGGTCGAAGTCTTGTTTCTCCTTAAAGGGGTGAAACGCAT
GACATTCTGAGGATAAAGTACCTGCTAAACATTGAGGAACGCCCTATTAT
AGAGCAACCATTGACTTTGACTTATGAGAGGACTTATGACAGGACTTATG
AGAGGACTTATGAGAGGTTCTCCCCCGGGGCTATCATACTCATGAGCAGA
TTATGTTTCGAGTGTATCACACGGCCCATCTACCGTCGTGTATGTTGTGC
GCGGTACTTCTGCGTTCGCACGGAGATCAAAGATCAAAGCACCTTGCGCC
CTTTGCGGTACAACTTGAACTATTAATAAAAGTCACGCCTACTGAATGTG
CAACATTTGGTTGCCCGGTATGTCCATTAAACCAGTGGTATATCGGTTGG
CGTCGCAAACGCAAGGATGATGGCTACCAGCTGGTAACATCCTTGTGAAA
CCAAACGCAGCCTCGCCGGCGAAAACACGGCACATCGCTGCGTCTTGGCA
TCGTTGGGACCTGCATTGCTGGGACGCGTGGTCCATGTCCGTTTGGATAC
GGCATGCGTTTAATAGGCACACACACCCTCCCCCCGTAGGTTTTGGTCCT
TGATCCACCTTTTGACAGATGGATGTCTGATCTTGCGCTCCGCGAGCCCC
CTTGCACGAGCCAAGCGTGAGGGCGCATTGCGTAGTGTTGAGAGCGTTGA
TATCAGCAAGATACAGGCGGTTATAAATTACAGGTTGATATCATACCGGT
ACGGCCCGTGAGAGCGAATACATTAATGAACTCTACGATATTGCTGTTTG
TGTCATGTTACATCTTCTGGCTCTCTCGCCACCCCCCACATGTCGGCGTG
TCATGCTGATGGAGGAGAGAGCCTTACTCTAAAACGTTCAACCTCAGATG
TTATCATACCGTCGTTGCGTCGTCGCCTTTCGGAAAAATATGGTTCAATG
ACCTCAGTCCCAAATTTTGCTTATAAATACTATTAATACAATACAATACA
ATTCAAGATAGTATCTAACTACAAGTTCTGTTGTGTGTACGCACGCACGC
CTGCTGTGCAATCATGTACAGTACACATTCCGCTGCTGCTCAGGTACGCG
TAGTGGGTTGTCCATCCACCGATACCCGCAAGGGAAGGTCATCCATGTCC
GGTACTGTAGTTACCTGTGGATACTGTAGCCTTGAAGTGTCAGTCGAAAA
CCCGGTGGCAAGGAAGTTAGGGTTGGCTAGGAGAGCTCTTGTGATAGCCC
ATCCCACAAACCGCCCCTGACCTGTACTATTATGTTAATAGTAACATGAA
CATGGCACACAATTACAGTGGTACCACTGGTAATACCAATATTATAGATT
CAACAGCAACAGGATAGGAAGGAATCCTCAGCTTTGTCCTAATCTGCTGA
AATGTACCAGGTATTAAATATGCCCGAAGTGTCTGATAAATGTCTTACTC
TCAGCAACAAGAGAGGAGGGGGCTGGGGCGGGTTTAGCCCTTTTGCCACT
GAGTCCGCTTTTGCGCCGAATATCGCCACTACTAACACTAGTACTAATAC
TAGTACTAATTTTAATATTAACACAAATAATGTGAGTACCCGGTTCGGGG
TAATGTTCCCGGTTCCCCGATTGTCACGTTCGTCCCGTTGGGCCACGTCA
GGCCTGACCTTGAAGTACATGTTGTGCCGCGTTATGTCACACCCCGAGTG
GGCGCCCCCCTGGACCAGTCCGTCCTGGAGTCCGCTTGGGAACCTACCAC
TACGCGCACAACTCCGGGATCTACCGTGTTAATACTATATTAATACCACT
CTCAAACCGTCGCCACTGCTCCCCACCAGGCGCCCACATTGGCGTCGACG
ACAGGACTCTAAAACGGGTCGCCATTCTAATACTAATACTAATAATATCT
ACTAATAGTACGTCTATGTCGCCGTGACGGGTGCGCGCACGAGGGCACCA
CCGCCGTGCATGCAAGCTATTATAGCTATTATAGGTATGTAGCCGTGTGG
CAGGTTGGCGTTCAGTTTTATTAATAGGCTACTTGGACAGCGAGGAGTAA
AAGTAGGAGTAGCCACCGTTCGGGTACTGCACCTGTTCCATGTTAAGTAC
GGTGCGGGCAGATATATGGCTTTACCCCCAAAACAGGCCCAGTCCCAAAA
GGATGAGGGTTAAGAGCGGCATCTCTAGGTCGAGGCCAGGCACTGCAAAA
ATACATAAAGGATAAGCAGGGTCTAGAAGTGTGCTGTACGGGATGATGAA
TTGAAGACTATGATAGGGTTCAAGAAATACCTTCATGGGCCAATGGATTA
CGGGGCAAAGTTGAAGGTCAAATGTAGGACTGGAGTTTTTGACGTGCGGG
AACTACCGTAGACGGAGATGAAGTAGAAGTACAACTGTGATACGCGACTC
GGATGAGTGTGAAGACCGTGTCCATGTAGTGGCGAAAAGCCCGTTTTATG
AAAAAAGAGAGAGAAGTATATCTGGTTGAAATGGGAAAAATTGAAGGTTT
GTGATGAAGAGACTTTTGAAGCATGGGTCAGCCAGACGAAGGCGGTAGCT
AAGCTGGAAGACAAGAAGTGGCCTGAGAAGGCGAGAAGTGATGATGAAGG
CAGGATAGAAAAAAGCGTTTTTGGGCCACCTTTGGCAGAGTAGGAAGGAA
CGATTGGCCATCGGCGAAAGATCGGTCGATCCCTGGGGGAACAATGCTCC
GCCCTCTCGAGGACGCGTGGCCAATGGCCAAACATCTGAGGCATCCAAAA
CACGCCCCCCCCCCCCCCCCCCCCCCTCCAGGATCGAACAAGGTTATGGA
TGGCGGTATCACGCACCGAGGCGGCGGCGTTGCGGCTGGAGAGACAGGGG
GAGACCGAGGAGGCAGCCCAGCTACGCGAGCGCGCGAACGCGATGCGCTA
CGAGGACCCGTATACGGCGCTCCAGGACGAGCTGGACGAGGCCGTCAAGA
ACGAGGCAAGCGTGAATCCTGTTACTCCTTTAACCCTATCGTTATTACGT
ACAACCCTCTCGTTACTTCTTATAACCCTATCGTTACTACTAGAGTGGTC
ACTGTGGGTATCAGGACCAAATTTCCGCTGGAAAGCGTATTAATGGTTCA
AGTTTTTTTTTTTAAACGTTGGCTCTTGGGGGAGCTAGCTAAGAGTGAAG
GGTGTTGGATGGAAACGAGGGTCCCTTTGTTTTGCCACACAGAGGCATGG
TGCTCAAAGCAACCTACTTTGAGCGCAACAATGCTGGTGTAGTTAATGTG
TACACATGTACCTAGTCAACAGAAAGACAGCAACACTCAAATCGCAATGT
TACGTTTGGCGTGAAGCGTTGTGCGGCGCAGGCAGATAAAATGCCTCCGA
AAAAGGAACCCAAGATCCCAACAGGTTTTATCTTAATGTAATAGTACACT
ACAAGCTCGGTTTGTTTTGCTCGCGGACGATGAGATCGCCGCGTTTTTTG
TCTTTTATTTTTCTTGGGATTGTTGTTTTTCCCGAGATGCGCGGAACAAC
ATACCAGTGCTGATATTAATATACTAATATTAGTATGATCGGCCGGTTTT
TCCGAGGTCGGTCTGTGGTCAAAAGGAGTCAGATAATCCCATCTCTCTTC
TCTTATCTTATCTTATCTTATCTTATCCCCGGTTCATGCCTTGGGTTGAT
GGCGAATGGAATGTGTTGGGTTCGGCACTCCGGCAGCTCTATTGCCGATT
TCTCGGATCCTGCTGTATCGCGTTGTCGCGCTTTTCGCGGTATACATTGT
ATCATACCTCGCGTTAAAATACGTGCTGGCTGTGATGTCTATCTACTGCA
TGATAGGAGGGTCTTTACGTCGGGAAGGGGCAAGGGCTGTGTCATTTTTT
ATACCCGATGCTGCATGCACCCGTCCCCATTATAGTGCCCTGCATCACTG
CATGCGAGTTAAGGTCTTTGTTACGCTTGTAGTAGTTCCTCGCCCATGGA
GCCGTGAAGTTATATTGTGTTGATGGTTTGACGAGAGATGGGACCATAAT
ACCTTGCATGCAAACCCTTGCTCGTATGATAGCGTCGGATGCGTGTCTGG
TGTTTGTAGGATTGGGATTTGTCGAACAGAGAGGTATTGGATCCTTTGCT
TTCCCCTCAAAAAGACGAAGGACGGGGGAGGGGGGGGGGGGAGGGGCGGG
CGTACTCGTGTTTTGCATGCCTTAGCTGTAAAGCAATTAACCACGCGCCT
GTCCTCGAGAGGACAGAGCAGTGTTTTGTTCCCACAAGATCGATATATCG
CCTATGGCCAATCGTTCCTTCCTACTCTGGGGGGGGGGGGGGGGGGGGGG
GGCACGCTCTGCCCGAGTCCGGGCAACAAGCTCTTTCGCTTCTCTCGCTG
TGTTGTGGTAAAAATCATGTACGATGGGAGAACTGTTTTACTGCGTGCAG
TGACCTACTTGAAAAACAACAACAAAAACGCAAATTCGTGTATACAAGTA
CAGGCATGATGTTGGCGAGCGGTGAGTGCGATTCGTTTCTCCCTTGTCGC
TGCCGGGGAGCGAGTGCTCCGCGGTCCCCGTGTCCCGGTTAAACCTCTCT
CCAGGGTTCAAAAAAAAAATCGCGCATTTTTAGAGCGCAGTCTTGTTTCT
GATCGCCCTCGAAACAGTACAAGCATCATAGTCGCACCACGGGCTCATGA
CTATTACGTATACTCCCCTATTTTCAAATTGAATGGTCGCCGGTTCCCGC
AGGAGTTTGTTAAGATCGCTCGACTTAGGCTGCAGATGGGGCGCATCGGC
GTACCTCCCAACGCGGAGATGCAAGCGAGGGCAGAGGGCAAGGACCCCAG
CTCCGTTGCGAAGGAGGTAAGAAACGTGTTCGTTTTATGCTTGAGGTTGG
GCGCGGGGGGGGGGGGGGGGGGGGCGGGGGGGTTTTTGGGTTTTTGGGGG
TTTTGAGTACAGGAAAAAAAGTTTTTTGTTTTTTGTTGGGGGGGCCTGGG
GAGGGTGGGGTAAAAGGAAAANNNNNNNNNNTGTGGTGTGTGGGTTTTTG
TTCTCGTCGCGTCGCGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
GGGGGGGGTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
CCGTGAGGTTTTCGCGTTTTTGAGGTGTTCATGTACAGGAAAATAAGTTT
GTTGATCTTTGTGTGGGAAGCCTTGGAAGGCTGCGCTAACAGGAAAAGCG
CTGCCGCACTTGCCAGAGCGACTGACTGCCCAGGCCGCCCCGGCACGATG
GTCTTGCTGAAGATCGGAAGGATACCGTCGAAGTAGCCTTTTAAGAATGC
CAAGCCCAGCGTATGATATCATCATATATAGCGGACATCGTAGATTTATT
TTTTTGGTCGGGCGTGACTTTATTTGTATACATTTTAAACCGTTGGTTTG
GTGGCCATGTCTCGCCGTAGCTTCGGTATTTGTCGCACCGCAGCTGACTG
CTCTCACGTCCCGAGTGTTCGGCGTTCGCCTGCCAAAGAGTGCTCCGGGT
ATAATTCGTATCATGCGAGCACGTGATCTTGAAAGTTTGCGTGGGCATCT
CGATCCCGTCTTGCCTTGCCTTGCCTTCCTGACCTGACCTGACCTGACCT
GACTTCTTATATCTGGTTGGTCACGTTTTTTTCGGTGTTTTTTTGTTTTT
GTTCTCCCATTTTTTCGATCGTCCGTCAGACCGCGAGGCAGATGCCGGGC
ATGTCGTCGCGCGAGAGCGAGCGGGGGTCGGCGTCCGGAGCCCGAGGAGA
CGGTAGCACCGTTAGCGACGGCTACAGCTCCAAGAGCGACACAACCACGC
ACGGCGTCAGGTAAGCAAAGCAAAGCAACCCTAAAATATCCAAAAGAGCG
CCACGTTTGTGTTTCGCCGTAGTACTAATACTAATACTAATACTTGTACT
TGTACTTGTACATGTACATGTACAGTACTTGTGTTGGTTTTTTCTTTCGA
GCGAGTGCACAGGGCGAATGCGGTGCTGCGCGAATGGATGCATGCGAAGC
AACGAGCGGGCCCCCGTCATCGCGACTCGCGCGATATGTACTGTTAACCC
CTTTGGGACTAACCCACTACACTGTTTGGAGCGCCGGTTAGCACGTAATG
AGGCGTGCTTGAAGCGGAGTCCCGGGGAACCCGTGTGCTATGACGCAGGA
ATGAGAGAGACAGGAGAACGGAGCCCAAGGCCAGCGGGGCTGTATCTTTC
GACTAGCATCGAGCGATAGTTTTGGTCGTTTCGGAGAGCCCTATAACTAC
TATTAATATTATCAATATAATATAATATAATACAATACGAATGTATTAGT
ACCAAGAGGGTTAAGCATATGGTGCAACAAGCGGGCGGTGACGCGTAACC
AACCTCTCGACGCTGCCTTCGCGTCTACCGTCCCGTCGATGCTTCTGCTT
TTCGGGAAAGAGAGTCGTCGGATTGACTTGTAGTGACAGTATTACGGAGG
TACTGTAGACAGTAGACAGTAATAGTCATGATGATGCGTAAAATTGTAAT
CAGGACCAAAGGCCCCAAGACGTGATGTGATGACGTGATGCCGAACACAA
AATAAACCAAAAACCGATGTGGTCTAGCCGCCTTGCAAGCGTCTGAAATC
TACCGGCCTGAAAGAATTTGTCATTTCAAAAACTGAAAAATATTTCACCG
CGATGTTGGACCAATGTTGAAAAAACAACACCTGAACGCTCCGATTATCG
AGGATGAATTTTGTATCGATTCCTGTATGCCTCCGTAACACTTGATCCTA
TTTTATTTCTTTTTTTTTATCCCTGTGCCGTTTCTGGCCGCACCGCGCGC
GTCCCATCTCTTCTCGTTTCTTCCCTTTCAGGGTCGAGGTTCGCAGCCAG
TATTACCCGGAGCAGAGCAACCCGCTCAAGGACCAGTACATCTTCGTGTA
CAAGGTCAAGATCACTAACCAGTCCCCCCAGACCGTCCAGCTCGTGTCCC
GCACGTGGGAGATCAAGGCCATCGAGGCCACCGAGGTACAGCTCGAGCGG
CGGTGGTTTGGGGCGTTGCAGAGAAATCAATCAAACCGAGAAGACCGATA
ATATTTTGGGAGGGGGGTTGGGGTACCGCCCGTTTAACCCTTTCGAGACT
GAGCCTAAAGTATATACAAGTATTACGGGGGACTAGGCCATGGTTAACAG
GTCCAAGTTTGCCACAAGTCTCACAACCTATAAACGTAAAAATAGGCTGG
AATTATCGAGGTTTTTCAAGGTCGATGTTCTTGTGTATTACAAACCATAT
CTCGTGTCTTTTTTGTTTTTTCATGATATTTTTGTTTGTTGTTTGGGTGT
TGATGGTATTACATTATTAGGAATAGTTGGGTGTTGTATTACAATAGTAG
TCATGGTCATGAGATTTGGTCCTGATTACTCTGTACCTCTGTAATAAATT
ATGTTTAGGTTTAAGGGTGCCGCGTGCCCGCGCCCCGATCGGACTCTGAT
CGGACCGGTCCAATTATTTCGCGTCCAACAGCTGCCATACAGTTAGTACT
CAACCATGGCTGGCTACTCTTGGCCCTTGTAGCGGCGGTGGAAACGCGGC
CTTGCGTTACGCTCAGCTCTCTCGCTCGGTGCACTCGGGTGTGTTAGTTA
CCGTTACCGTTCCCGCATCACCCCTAGTCACTTTTACGTGGGACTATACC
ACATTAATAGTTGACAGGGCCATTTTTTCCACACAAGTCTCAACCTAGAA
AAACATCAAAATAGGCTATTAATGGAATTATCGAGATTGCAAGGTCGATG
TTCTTGTGCATGCATGCATGGCCATAACTCGTGTCGTTTTTGTTTTTCGC
GAGATTTTTTGTTGTTTTGGGTACTCATGGCCGGAATAGCTCTGGGTATT
CATGGTCGTGAGATTTGGTCCTGATTACTGTGTACCTACGTGGTATTAAT
AGTCAGTAATCACTGTAATAGTCACCACATTCGACGCAACAACAAAAAAA
AACAGACTCGATTCCAAAAGAGTTGGTAAGAGCAACAGCTGCTTGCTCGT
CTTGGGCGCCGCGCCGCGCGGTGTGTCCCTTCTTGGTGTGGTGGTTGTTT
TTTCTCCAGCGCGCTTTCTTAGAGAGTGTTGGTGTTGCGTTGTTTCCAAG
CTCGCCGTAGGCTCTGACTGCACGTCTGGAAGCAAGCGGTCGTGTGGGAT
CGTGTGGTGTGCAGATTGCCCCCTCTTGAGCTTTCGCTATTTCAGGCAGG
CCTTGTGCGCGGACAGAATCGTCGTCAAACGCCCTACCCCACCCACCAGC
AATAACATGACCCAACGCCTCCCCCCCTCCCCTAGCCAGACGAAGCCGGT
AGATTATACTGGGGTATAAGAAGTGGCCTGAAAAGGCGAGAAGTGATTTA
TAGACAGGAAAGGGAAACACTTTTGCGCTACCTATGTCAGAGTAGGAAGG
AACGACTGGCCATCGGCTATCGATCGATCGGTCCTGTGGAAGCAATGCTC
CGTCCTCTCGAGGACGCGTGGTCAATGGCCTAACAGCTAAGGCATGCAAA
TCATGGGCACCCTTTCGCCCCCGCCCCCTCCCCCCCCCCCTCCATCCTCT
TTTTTTAACAACCGTATCATAGGAAACTTGAGTACTTATCCCCTGAAACA
ACACAACAATGATAAACTATAAAGGTAGCGTTGGGGAACATTTTTTTTGC
GGAGAGGAAAGATGGTCCAAGCTAACTCGATGGAGGTGTAGGTAGTGTAT
CATGTTAAGGGGTCCTTGTGCAAATATCACTGCCTCGGTGAAAGTGTAGC
ACTAAAATGCAAGTATGTTTACTGCAATATAGTACCCCTCCCCCCTAAAA
AAGTAAAGATTTCAGAAATATAGCGCGAGCGTTGGGGTCCCACCTTCCCC
CCCCCCCCCAATGAACAATAATGGCGACTGTAATAGCTGCTGGTGCTAAT
CAAATCATTATTGTGAAAAAGCAGCCTGGCCGGCGAAACCCCGGCATATA
CCGTCACGTCCCTGCATTGTTGGGTTGCTTGGTCTCACATTATGATGTCC
GTTTGGGTAGGACATGCGTTAAACACAAGCACCCCCCCACCACCACCCCA
TGAAACGAACGAACGACCGTTCTCTAGGCGCCGCAATTGGTGAAGGGACC
CGGTGTCGTCGGACAGCAGCCGGTGCTCGAGCCAGGCCAGAGCTTCGAGT
ACTCCTCGGCATGCCCCATCACATGCGCCCCCAAGGAAGGCTACCAGGTG
AGAACGTAGGGCGTGCGCGTCAGGCCGGGGCAAGCAAGCGCCTTCCTTTA
TTTGTAGTCGCGGTCGTTGCGTGTGTAGACTCCAGGGACGGAAGATGGCT
GGCTCGTCCTGGAGCGGGAGGGGCGGGGGGCTACTCATCATAACGTAATT
TTCCACAGCAACCCCCCCCCCCCCTCCCCCCCTCCAATATTTGTCAAAGT
AGGAAGGAACGATTGGCCATCGGCGATAGATCGATCCTGTGGGAACAATA
CTCTGTCTTCCCGAGACCGCGCTTGGTCAATGTCCTGACAGCTAAGGCAT
GCAAAACTAAACTCGAGTACGCCCCCCCCCCCCTACAATGCTCCGTCCTC
TCGAGGACGCGTGGTCAATGGTCTAACAGCTAAGGCATGCAAAACATGAG
TACCCCCCCCCCCCTACCGACACTCGCAGGTGCTCGGCAGGATGAAGGGC
TCCTACCTGATCGTCATGGGCGCGGTCGGCGAGGCGGCTTTCGAGGCCAA
GATCGACCCGTTCTACCTCATCCTGCCCCAGTCTGTCCTGGACGAGCGCG
CGGGCGGGAGGGGGGGTTCTGGCCCGGCTGGCGGGGGAGACATGGCGGGG
AACAACTGGTGAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1316:5242..20604+

>mRNA_S-dermatodea_contig1316.1889.1 ID=mRNA_S-dermatodea_contig1316.1889.1|Name=mRNA_S-dermatodea_contig1316.1889.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2652bp|location=Sequence derived from alignment at S-dermatodea_contig1316:5242..20604+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAATAAGCGGCCTGCGACGACCATGACCTCCCCCCGAAGGCGCAATGA
CGGTGCTCGGAGAAGCAGGGGTGCCTGCGCTGCCGCGGCTGCGGCCGCGG
CCGCGACGGGGACCCTTGCTCTCGCGTGCCTCGTCCTACTCAGCGCGCCC
CGCCCAGCGGACGGCTTCTTCCGCCCATCGACGAGAGTAAAAGCCCCCCC
CGCGGGGCCCAAGTCTCTCAGCTCTTTGCCCCAGGGCCGGCAGCAGCTGC
GACCGCCCGCGATATTTCGTGTTCGGCAGCCGGAGGATGAGGGGGCGGGA
GCGGCGGGGCGGCCGCTGCCGTTGCTGGTGATGAGCGGGACGGATGAAGG
GGCGGAGGATGAGTCTGAGGGGGTTGAGGAAGAGGAGGGGGAGGATGATG
GGATTCAGATGCCGGCGATTGAGCTCCCTGAGATGATGAGCGATGAGATG
AATAAGCGGCCTGCGACGACCATGACCTCCCCCCGAAGGCGCAATGACGG
TGCTCGGAGAAGCAGGGGTGCCTGCGCTGCCGCGGCTGCGGCCGCGGCCG
CGACGGGGACCCTTGCTCTCGCGTGCCTCGTCCTACTCAGCGCGCCCCGC
CCAGCGGACGGCTTCTTCCGCCCATCGACGAGAGTAAAAGCCCCCCCCGC
GGGGCCCAAGTCTCTCAGCTCTTTGCCCCAGGGCCGGCAGCAGCTGCGAC
CGCCCGCGATATTTCGTGTTCGGCAGCCGGAGGATGAGGGGGCGGGAGCG
GCGGGGCGGCCGCTGCCGTTGCTGGTGATGAGCGGGACGGATGAAGGGGC
GGAGGATGAGTCTGAGGGGGTTGAGGAAGAGGAGGGGGAGGATGATGGGA
TTCAGATGCCGGCGATTGAGCTCCCTGAGATGATGAGCGATGAGGATCGA
ACAAGGTTATGGATGGCGGTATCACGCACCGAGGCGGCGGCGTTGCGGCT
GGAGAGACAGGGGGAGACCGAGGAGGCAGCCCAGCTACGCGAGCGCGCGA
ACGCGATGCGCTACGAGGACCCGTATACGGCGCTCCAGGACGAGCTGGAC
GAGGCCGTCAAGAACGAGGCAAGCGATCGAACAAGGTTATGGATGGCGGT
ATCACGCACCGAGGCGGCGGCGTTGCGGCTGGAGAGACAGGGGGAGACCG
AGGAGGCAGCCCAGCTACGCGAGCGCGCGAACGCGATGCGCTACGAGGAC
CCGTATACGGCGCTCCAGGACGAGCTGGACGAGGCCGTCAAGAACGAGGC
AAGCTTTGTTAAGATCGCTCGACTTAGGCTGCAGATGGGGCGCATCGGCG
TACCTCCCAACGCGGAGATGCAAGCGAGGGCAGAGGGCAAGGACCCCAGC
TCCGTTGCGAAGGAGTTTGTTAAGATCGCTCGACTTAGGCTGCAGATGGG
GCGCATCGGCGTACCTCCCAACGCGGAGATGCAAGCGAGGGCAGAGGGCA
AGGACCCCAGCTCCGTTGCGAAGGAGACCGCGAGGCAGATGCCGGGCATG
TCGTCGCGCGAGAGCGAGCGGGGGTCGGCGTCCGGAGCCCGAGGAGACGG
TAGCACCGTTAGCGACGGCTACAGCTCCAAGAGCGACACAACCACGCACG
GCGTCAGACCGCGAGGCAGATGCCGGGCATGTCGTCGCGCGAGAGCGAGC
GGGGGTCGGCGTCCGGAGCCCGAGGAGACGGTAGCACCGTTAGCGACGGC
TACAGCTCCAAGAGCGACACAACCACGCACGGCGTCAGGGTCGAGGTTCG
CAGCCAGTATTACCCGGAGCAGAGCAACCCGCTCAAGGACCAGTACATCT
TCGTGTACAAGGTCAAGATCACTAACCAGTCCCCCCAGACCGTCCAGCTC
GTGTCCCGCACGTGGGAGATCAAGGCCATCGAGGCCACCGAGGGTCGAGG
TTCGCAGCCAGTATTACCCGGAGCAGAGCAACCCGCTCAAGGACCAGTAC
ATCTTCGTGTACAAGGTCAAGATCACTAACCAGTCCCCCCAGACCGTCCA
GCTCGTGTCCCGCACGTGGGAGATCAAGGCCATCGAGGCCACCGAGGCGC
CGCAATTGGTGAAGGGACCCGGTGTCGTCGGACAGCAGCCGGTGCTCGAG
CCAGGCCAGAGCTTCGAGTACTCCTCGGCATGCCCCATCACATGCGCCCC
CAAGGAAGGCTACCAGGCGCCGCAATTGGTGAAGGGACCCGGTGTCGTCG
GACAGCAGCCGGTGCTCGAGCCAGGCCAGAGCTTCGAGTACTCCTCGGCA
TGCCCCATCACATGCGCCCCCAAGGAAGGCTACCAGGTGCTCGGCAGGAT
GAAGGGCTCCTACCTGATCGTCATGGGCGCGGTCGGCGAGGCGGCTTTCG
AGGCCAAGATCGACCCGTTCTACCTCATCCTGCCCCAGTCTGTCCTGGAC
GAGCGCGCGGGCGGGAGGGGGGGTTCTGGCCCGGCTGGCGGGGGAGACAT
GGCGGGGAACAACTGGTGAGTGCTCGGCAGGATGAAGGGCTCCTACCTGA
TCGTCATGGGCGCGGTCGGCGAGGCGGCTTTCGAGGCCAAGATCGACCCG
TTCTACCTCATCCTGCCCCAGTCTGTCCTGGACGAGCGCGCGGGCGGGAG
GGGGGGTTCTGGCCCGGCTGGCGGGGGAGACATGGCGGGGAACAACTGGT
GA
back to top