mRNA_S-dermatodea_contig13150.1886.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13150.1886.1
Unique NamemRNA_S-dermatodea_contig13150.1886.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13150.1886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13150contigS-dermatodea_contig13150:2666..4525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size329
Cds size327
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13150.1886.1prot_S-dermatodea_contig13150.1886.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13150 2668..4525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924275.4189243-CDS-S-dermatodea_contig13150:2667..27421622924275.4189243-CDS-S-dermatodea_contig13150:2667..2742Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13150 2668..2742 -
1694079143.4816601-CDS-S-dermatodea_contig13150:2667..27421694079143.4816601-CDS-S-dermatodea_contig13150:2667..2742Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13150 2668..2742 -
1622924275.429335-CDS-S-dermatodea_contig13150:3384..34951622924275.429335-CDS-S-dermatodea_contig13150:3384..3495Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13150 3385..3495 -
1694079143.4913497-CDS-S-dermatodea_contig13150:3384..34951694079143.4913497-CDS-S-dermatodea_contig13150:3384..3495Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13150 3385..3495 -
1622924275.4369917-CDS-S-dermatodea_contig13150:4075..41791622924275.4369917-CDS-S-dermatodea_contig13150:4075..4179Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13150 4076..4179 -
1694079143.5009646-CDS-S-dermatodea_contig13150:4075..41791694079143.5009646-CDS-S-dermatodea_contig13150:4075..4179Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13150 4076..4179 -
1622924275.4473221-CDS-S-dermatodea_contig13150:4488..45251622924275.4473221-CDS-S-dermatodea_contig13150:4488..4525Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13150 4489..4525 -
1694079143.509936-CDS-S-dermatodea_contig13150:4488..45251694079143.509936-CDS-S-dermatodea_contig13150:4488..4525Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13150 4489..4525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13150.1886.1

>prot_S-dermatodea_contig13150.1886.1 ID=prot_S-dermatodea_contig13150.1886.1|Name=mRNA_S-dermatodea_contig13150.1886.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
GKRQFCAGHRIEGMVDLYAKRCEADGCLKQPCYALAGQKPRFCGGHKGDG
MMDVRSKRCEDEQCMKHPSFGYKGKKAVRCKNHQLEGMMAVQGRRCEGPD
CSKRACFGL
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mRNA from alignment at S-dermatodea_contig13150:2666..4525-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13150.1886.1 ID=mRNA_S-dermatodea_contig13150.1886.1|Name=mRNA_S-dermatodea_contig13150.1886.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1860bp|location=Sequence derived from alignment at S-dermatodea_contig13150:2666..4525- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGAAGAGGCAGTTTTGTGCCGGGCACCGAATCGAAGGTGAGGCGTTTTC
AATCTTGACCGGAGTTCCCCACACCTGACGTTTTGGCTGGCGGTGCCATT
CGGTGTCTACCGTGTAGAGACGAGACTGACCTGGACGGGCCCCACTCTGA
AGCTGGTATGATATTCGACTTGGTGAAGACGTTTCTTGCGCGCCGCGGCA
TTTTGTCCGGGTCGGGTTGTTAACCTTTTGGTTGGGCAACCAAAACACGC
AAAAAATACGTTTTACGTGGGTGAATATAAATGACTTGAACGCGTCCACC
CCCCCCCCCCCGGTTGCTCCTGTGAATCCTCTGCGGGGGGCGAAAGGCAT
GGTGGACTTGTACGCAAAACGTTGCGAAGCGGACGGGTGTCTGAAGCAGC
CGTGCTACGCCTTGGCTGGCCAGAAGCCGCGCTTTTGTGGCGGGCATAAG
GTGCAGTGGCAGTTGTTCGGGCAGTGGGGTAACTTTTTTCGACTTCTAAA
GAAAGGGAAACGAAAAAGCGCGCGCTGTGCAAACCGACCGACGGCTGCTT
GCTTTGGGGGTTGGTCGCGAACATTCTACCAGCGGCCGGGGAATTGTAGA
GTGCGGGGGTGCATAGCGCGTTTGATGCGGGCACCGAACGACCGCTGGGG
GGGCGCTTGCTGCTGATGCGCGTGCATGTGGATCTCGATACTTGATAGTG
CCTTGTAGTCATCATAGCGTGCTGTCACCATCGAGGGGCACTTGCGGCAT
GCGGCGAAGCCGTCGGGTGCGGTGTGCGCGTAACCTAACCACTAAGACCC
ATGCCCCTGTTAAGGCGTATCCATCCAGTTGGTAGTATCGCCATCCCGAG
TCGCGACCGACCCATTTACCCAAGAGGACCCTTCCTCCAGGCGTCGACGA
CGATGGTGGCGAGCGCCTGCCGGGCTTCGTATTTCCGATATCGTAATCAC
CCATTTCCGCCATTTGAGCACCCGGACCCTCGGAAAGTGCGCCGGTAATT
CGACTGTGGGCAACGGTTATTTTTGCGCAGGGGGATGGGATGATGGACGT
GCGCTCGAAGCGTTGCGAAGACGAGCAGTGCATGAAGCACCCGAGTTTCG
GGTACAAGGGGAAGAAGGCGGTGCGCTGCAAGAACCACCAGGTGCGTTTC
CAGTTTTAACCCTCGTTTGGGGCTGGGCCTGTTTTTGCGTCCCTCCCTCT
GCCCGCGCGCTCGGTATTTTACGTAGAGGCGGCAGACATGTATGTGCCCT
TGCCGCGCTCAGCATGCATGCACGGCACTCCTTGTGCGTGTACCCCCATC
ACATATAATAGATCCTATGAAATTTGAAATTTCAATACCGTAGCGGTGAT
TTGCGGTGAAATAAAAAATTATGTCCCGATAGGATTCATGGGTGTCTTTT
GTTGGCCAGTTTTATTACGCTTTGGCCGTGGGGTTTCCTGCGTTTGGCGA
TGGCGTTAGGTCTGGACATCATACCGTAGCGCGCACCTGCAAAGGGGCAG
TAGCGCACACACGGGGAGGATTTTCGCAGACTCTACAGGCTGTGTTTCCT
GCGCCCCTCTGGGACAGACAAGCGTCGCACACAAAAGTTGGCGTTTGAAC
GATTTCGTGCATGCCGTGGCGAAACTCATGCCGTCGCGCCACTTGTACCT
AAGCAAACCGAATCCCTTCGCGTCAGATCAACGCCGCGCCCCACATCCCG
CGTCTTGGCCGTCTTTTCTGCTTCTTTCTAACATATAACCTATTGTATGC
CCACACTGTTTTCCCGTGTTTATACGCGTTTAGCTGGAAGGCATGATGGC
CGTGCAAGGGCGGCGTTGCGAGGGGCCGGATTGCTCCAAGCGTGCGTGCT
TCGGCTTGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13150:2666..4525-

>mRNA_S-dermatodea_contig13150.1886.1 ID=mRNA_S-dermatodea_contig13150.1886.1|Name=mRNA_S-dermatodea_contig13150.1886.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig13150:2666..4525- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGAAGAGGCAGTTTTGTGCCGGGCACCGAATCGAAGGGGAAGAGGCAGT
TTTGTGCCGGGCACCGAATCGAAGGCATGGTGGACTTGTACGCAAAACGT
TGCGAAGCGGACGGGTGTCTGAAGCAGCCGTGCTACGCCTTGGCTGGCCA
GAAGCCGCGCTTTTGTGGCGGGCATAAGGCATGGTGGACTTGTACGCAAA
ACGTTGCGAAGCGGACGGGTGTCTGAAGCAGCCGTGCTACGCCTTGGCTG
GCCAGAAGCCGCGCTTTTGTGGCGGGCATAAGGGGGATGGGATGATGGAC
GTGCGCTCGAAGCGTTGCGAAGACGAGCAGTGCATGAAGCACCCGAGTTT
CGGGTACAAGGGGAAGAAGGCGGTGCGCTGCAAGAACCACCAGGGGGATG
GGATGATGGACGTGCGCTCGAAGCGTTGCGAAGACGAGCAGTGCATGAAG
CACCCGAGTTTCGGGTACAAGGGGAAGAAGGCGGTGCGCTGCAAGAACCA
CCAGCTGGAAGGCATGATGGCCGTGCAAGGGCGGCGTTGCGAGGGGCCGG
ATTGCTCCAAGCGTGCGTGCTTCGGCTTGCTGGAAGGCATGATGGCCGTG
CAAGGGCGGCGTTGCGAGGGGCCGGATTGCTCCAAGCGTGCGTGCTTCGG
CTTG
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