mRNA_S-dermatodea_contig1313.1875.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1313.1875.1
Unique NamemRNA_S-dermatodea_contig1313.1875.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1313.1875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1313contigS-dermatodea_contig1313:18088..18652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size565
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1313.1875.1prot_S-dermatodea_contig1313.1875.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1313 18097..18483 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.6376944-UTR-S-dermatodea_contig1313:18087..180961622924274.6376944-UTR-S-dermatodea_contig1313:18087..18096Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1313 18088..18096 +
1694079142.8897822-UTR-S-dermatodea_contig1313:18087..180961694079142.8897822-UTR-S-dermatodea_contig1313:18087..18096Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1313 18088..18096 +
1622924274.6625063-UTR-S-dermatodea_contig1313:18483..186521622924274.6625063-UTR-S-dermatodea_contig1313:18483..18652Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1313 18484..18652 +
1694079142.918709-UTR-S-dermatodea_contig1313:18483..186521694079142.918709-UTR-S-dermatodea_contig1313:18483..18652Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1313 18484..18652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.65026-CDS-S-dermatodea_contig1313:18096..184831622924274.65026-CDS-S-dermatodea_contig1313:18096..18483Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1313 18097..18483 +
1694079142.8999498-CDS-S-dermatodea_contig1313:18096..184831694079142.8999498-CDS-S-dermatodea_contig1313:18096..18483Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1313 18097..18483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1313.1875.1

>prot_S-dermatodea_contig1313.1875.1 ID=prot_S-dermatodea_contig1313.1875.1|Name=mRNA_S-dermatodea_contig1313.1875.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=129bp
MWWVIRAEVLLLLLLLLLLLLLLLLMGLTACTTAHSSSFRPRHDPPRPRL
RSWQRRWTQSLVLSFLSARVGVDEAWGAVRRWLSTSRLASFGFGPQRTSR
MMVFEDYNNTDRTTHSRIPQEYEVCMLP*
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mRNA from alignment at S-dermatodea_contig1313:18088..18652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1313.1875.1 ID=mRNA_S-dermatodea_contig1313.1875.1|Name=mRNA_S-dermatodea_contig1313.1875.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=565bp|location=Sequence derived from alignment at S-dermatodea_contig1313:18088..18652+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCAAAGAATGTGGTGGGTGATTAGAGCTGAAGTGCTGCTGCTGCTGCT
GCTGCTGCTGTTGCTCCTGCTGCTGCTGCTGCTGATGGGTTTGACTGCAT
GCACCACTGCTCACTCGTCGTCGTTCCGTCCTCGCCACGACCCCCCGCGC
CCCCGCTTGCGTTCCTGGCAACGGCGCTGGACGCAGTCTCTCGTGCTCTC
CTTTCTTTCGGCTCGTGTCGGCGTAGACGAAGCCTGGGGCGCGGTTCGGC
GTTGGTTATCTACCTCACGGTTGGCTTCTTTTGGGTTTGGGCCGCAACGA
ACCAGCAGGATGATGGTATTCGAAGATTACAACAACACAGACAGAACAAC
TCACTCACGGATCCCACAGGAATATGAGGTCTGTATGCTGCCTTGATGCC
CCTTGATGCCCCTTCAAGCAACAAGTAAGGCTTTATTAGCTAGAACGACC
GCGGGCGGCTGCGCAACTTCAACTCTGAAAGCGAGTTAGTTGTTGTGGTG
GTGCGGGTTGGTAACGGTACAACCGCGAGCTCGGTCACAGCAATCGCCCG
GGGTGTCGGTGTGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1313:18088..18652+

>mRNA_S-dermatodea_contig1313.1875.1 ID=mRNA_S-dermatodea_contig1313.1875.1|Name=mRNA_S-dermatodea_contig1313.1875.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at S-dermatodea_contig1313:18088..18652+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGGTGGGTGATTAGAGCTGAAGTGCTGCTGCTGCTGCTGCTGCTGCT
GTTGCTCCTGCTGCTGCTGCTGCTGATGGGTTTGACTGCATGCACCACTG
CTCACTCGTCGTCGTTCCGTCCTCGCCACGACCCCCCGCGCCCCCGCTTG
CGTTCCTGGCAACGGCGCTGGACGCAGTCTCTCGTGCTCTCCTTTCTTTC
GGCTCGTGTCGGCGTAGACGAAGCCTGGGGCGCGGTTCGGCGTTGGTTAT
CTACCTCACGGTTGGCTTCTTTTGGGTTTGGGCCGCAACGAACCAGCAGG
ATGATGGTATTCGAAGATTACAACAACACAGACAGAACAACTCACTCACG
GATCCCACAGGAATATGAGGTCTGTATGCTGCCTTGAATGTGGTGGGTGA
TTAGAGCTGAAGTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTCCTGCTG
CTGCTGCTGCTGATGGGTTTGACTGCATGCACCACTGCTCACTCGTCGTC
GTTCCGTCCTCGCCACGACCCCCCGCGCCCCCGCTTGCGTTCCTGGCAAC
GGCGCTGGACGCAGTCTCTCGTGCTCTCCTTTCTTTCGGCTCGTGTCGGC
GTAGACGAAGCCTGGGGCGCGGTTCGGCGTTGGTTATCTACCTCACGGTT
GGCTTCTTTTGGGTTTGGGCCGCAACGAACCAGCAGGATGATGGTATTCG
AAGATTACAACAACACAGACAGAACAACTCACTCACGGATCCCACAGGAA
TATGAGGTCTGTATGCTGCCTTGA
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