mRNA_S-dermatodea_contig13121.1868.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13121.1868.1
Unique NamemRNA_S-dermatodea_contig13121.1868.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13121.1868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13121contigS-dermatodea_contig13121:1736..2656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size922
Cds size525
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.3810046-UTR-S-dermatodea_contig13121:1735..21311622924274.3810046-UTR-S-dermatodea_contig13121:1735..2131Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13121 1736..2131 +
1694079142.7705033-UTR-S-dermatodea_contig13121:1735..21311694079142.7705033-UTR-S-dermatodea_contig13121:1735..2131Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13121 1736..2131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.3896217-CDS-S-dermatodea_contig13121:2131..26561622924274.3896217-CDS-S-dermatodea_contig13121:2131..2656Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13121 2132..2656 +
1694079142.7803476-CDS-S-dermatodea_contig13121:2131..26561694079142.7803476-CDS-S-dermatodea_contig13121:2131..2656Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13121 2132..2656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13121.1868.1prot_S-dermatodea_contig13121.1868.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13121 2132..2656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13121.1868.1

>prot_S-dermatodea_contig13121.1868.1 ID=prot_S-dermatodea_contig13121.1868.1|Name=mRNA_S-dermatodea_contig13121.1868.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=175bp
MENKRKSNILANPLSRLKVRRERVRALGIICDRATLSQRQCQRQDYRGEG
RALKTHARMRWNQLDTSRNVEFACVVVTGLSRKTKSTPTSPRLGQLRIRN
TCVNQVTSIAAATTARAGGGSIGSKKEHRQSDNVDRPDAMAGSTHTHTRA
RALFACLRKKLTKGSQENKSKGHPS
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mRNA from alignment at S-dermatodea_contig13121:1736..2656+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13121.1868.1 ID=mRNA_S-dermatodea_contig13121.1868.1|Name=mRNA_S-dermatodea_contig13121.1868.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=921bp|location=Sequence derived from alignment at S-dermatodea_contig13121:1736..2656+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACACTTTACTACTTCTAGCCTTTTGACAGGGCACGAAAGCACGAGAAA
GTTCATTAATAGAGGGGGACGAATAATTTAAAAAAAACACGAAAATAACA
AAATAGAGTACAAAAAAAGAGAGAAAAAACGAAAAAGGAAAGAAAGCGAC
GGGGGGAAAACGCAGGAGGGGCGCACAAGGCAATCCTCCCCCCTGACCGA
TCAGAGAGCAACAACACAGAATACATTCATGTACGTAGTACGTACACATT
CGCCAAATTAATAAGAATTTACCCTACGCGCACGCTCGAGGTATCAGGAC
AACGGCCACCGTCCCGAACCGTCGGCGCCAGACAGAAGAAGCCATCCCAG
ATTGCCAAAAATAATATTGGTTCGGATAGAAAATAGTCGGGACAAAATGG
AAAACAAAAGGAAGTCAAACATCCTCGCGAATCCGCTCTCTCGTCTTAAA
GTTCGCAGAGAGCGGGTCCGTGCCCTTGGGATCATCTGCGATCGGGCAAC
GTTATCTCAACGACAATGTCAACGGCAGGATTACAGAGGCGAGGGACGTG
CTCTCAAGACACACGCACGCATGCGGTGGAATCAACTCGATACATCCCGA
AATGTCGAGTTCGCATGCGTGGTCGTGACCGGCCTTTCGCGAAAAACAAA
ATCAACGCCAACCAGCCCACGGCTTGGCCAGCTAAGAATAAGAAACACCT
GCGTCAATCAGGTTACATCTATAGCCGCCGCAACGACAGCGCGAGCGGGT
GGGGGTAGCATCGGCAGCAAGAAAGAGCACAGGCAGAGCGACAACGTAGA
TAGACCAGATGCAATGGCTGGCAGCACACACACACACACACGAGCCCGCG
CCCTATTTGCTTGTTTGCGAAAAAAACTAACAAAAGGAAGTCAAGAAAAC
AAAAGCAAGGGCCATCCCTCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13121:1736..2656+

>mRNA_S-dermatodea_contig13121.1868.1 ID=mRNA_S-dermatodea_contig13121.1868.1|Name=mRNA_S-dermatodea_contig13121.1868.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at S-dermatodea_contig13121:1736..2656+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAAACAAAAGGAAGTCAAACATCCTCGCGAATCCGCTCTCTCGTCT
TAAAGTTCGCAGAGAGCGGGTCCGTGCCCTTGGGATCATCTGCGATCGGG
CAACGTTATCTCAACGACAATGTCAACGGCAGGATTACAGAGGCGAGGGA
CGTGCTCTCAAGACACACGCACGCATGCGGTGGAATCAACTCGATACATC
CCGAAATGTCGAGTTCGCATGCGTGGTCGTGACCGGCCTTTCGCGAAAAA
CAAAATCAACGCCAACCAGCCCACGGCTTGGCCAGCTAAGAATAAGAAAC
ACCTGCGTCAATCAGGTTACATCTATAGCCGCCGCAACGACAGCGCGAGC
GGGTGGGGGTAGCATCGGCAGCAAGAAAGAGCACAGGCAGAGCGACAACG
TAGATAGACCAGATGCAATGGCTGGCAGCACACACACACACACACGAGCC
CGCGCCCTATTTGCTTGTTTGCGAAAAAAACTAACAAAAGGAAGTCAAGA
AAACAAAAGCAAGGGCCATCCCTCAATGGAAAACAAAAGGAAGTCAAACA
TCCTCGCGAATCCGCTCTCTCGTCTTAAAGTTCGCAGAGAGCGGGTCCGT
GCCCTTGGGATCATCTGCGATCGGGCAACGTTATCTCAACGACAATGTCA
ACGGCAGGATTACAGAGGCGAGGGACGTGCTCTCAAGACACACGCACGCA
TGCGGTGGAATCAACTCGATACATCCCGAAATGTCGAGTTCGCATGCGTG
GTCGTGACCGGCCTTTCGCGAAAAACAAAATCAACGCCAACCAGCCCACG
GCTTGGCCAGCTAAGAATAAGAAACACCTGCGTCAATCAGGTTACATCTA
TAGCCGCCGCAACGACAGCGCGAGCGGGTGGGGGTAGCATCGGCAGCAAG
AAAGAGCACAGGCAGAGCGACAACGTAGATAGACCAGATGCAATGGCTGG
CAGCACACACACACACACACGAGCCCGCGCCCTATTTGCTTGTTTGCGAA
AAAAACTAACAAAAGGAAGTCAAGAAAACAAAAGCAAGGGCCATCCCTCA
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