mRNA_S-dermatodea_contig13114.1866.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13114.1866.1
Unique NamemRNA_S-dermatodea_contig13114.1866.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13114.1866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13114contigS-dermatodea_contig13114:4548..5531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size441
Cds size339
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13114.1866.1prot_S-dermatodea_contig13114.1866.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13114 4548..4886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.2937133-CDS-S-dermatodea_contig13114:4547..48861622924274.2937133-CDS-S-dermatodea_contig13114:4547..4886Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13114 4548..4886 +
1694079142.7158356-CDS-S-dermatodea_contig13114:4547..48861694079142.7158356-CDS-S-dermatodea_contig13114:4547..4886Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13114 4548..4886 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924274.3033087-UTR-S-dermatodea_contig13114:4886..49301622924274.3033087-UTR-S-dermatodea_contig13114:4886..4930Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13114 4887..4930 +
1694079142.7304173-UTR-S-dermatodea_contig13114:4886..49301694079142.7304173-UTR-S-dermatodea_contig13114:4886..4930Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13114 4887..4930 +
1622924274.310838-UTR-S-dermatodea_contig13114:5475..55311622924274.310838-UTR-S-dermatodea_contig13114:5475..5531Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13114 5476..5531 +
1694079142.7418268-UTR-S-dermatodea_contig13114:5475..55311694079142.7418268-UTR-S-dermatodea_contig13114:5475..5531Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13114 5476..5531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13114.1866.1

>prot_S-dermatodea_contig13114.1866.1 ID=prot_S-dermatodea_contig13114.1866.1|Name=mRNA_S-dermatodea_contig13114.1866.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
RGEGDTEGTCFPCTVALLLPLAEVASVDLSLRREDIPPNRHLGQRRYRWS
LEGSTQSLSVAEHLLLLYSAQQQAVICLFHSCSRRTAEQQPWRGRRSRVA
FPWPSCLTGLWG*
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mRNA from alignment at S-dermatodea_contig13114:4548..5531+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13114.1866.1 ID=mRNA_S-dermatodea_contig13114.1866.1|Name=mRNA_S-dermatodea_contig13114.1866.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=984bp|location=Sequence derived from alignment at S-dermatodea_contig13114:4548..5531+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAGGCGAGGGCGATACAGAGGGTACCTGCTTTCCGTGTACGGTAGCTCT
TCTTCTTCCGTTGGCGGAGGTCGCTTCAGTGGACTTATCTCTTCGTCGAG
AGGACATTCCCCCAAACAGGCATCTCGGACAACGGCGATATCGTTGGTCG
TTGGAAGGATCGACACAGAGTCTTTCAGTTGCGGAGCATTTGTTACTGCT
GTACTCTGCACAACAACAAGCAGTGATCTGCTTGTTTCACAGCTGCTCAC
GGCGCACCGCTGAACAACAGCCATGGAGGGGGCGACGCTCTCGTGTTGCC
TTCCCCTGGCCTTCTTGCCTGACGGGGCTCTGGGGTTGATGCTTTCGTTC
GGCTCCGTTTCCGACATCATCGCTGCAAACATGGTTAGTCTATGTATGCG
TCAGGGAAGGGTATGATAGCTCTACCTACAGCTGTATATTGGTGATCTCT
TGTACACGTACTTGTATGTTTTACAAATGTACAGTACTACAGTCTGTAGC
TCTATTATAGAGCCACACCGACTGCTGTACAAGTACGAGTAGCTCTATTA
TAGCCAGACCGACTGAACGAGTGAACGATACCCTGTCAGCTACAACTTCT
ACGACCCGATTTCACTTCAATTCAGCCTATCACACCAGTACCGGCCAGAG
ACGTACGCAACCCGCTGGCTGGCGCGCGGTTACCGAGACGTGTGCAGTTG
CAGCGGAGGAACTCTCTCGTACCAGTATTAGGATTACACGGGGCAGAGGT
TCCAATATCCTCCGTGTGCGTATGGTACCGTATTTGCACGAGGCACGAGG
CACGAGGCAACTGCAGTAGTGTTTGTTCTGTTATAACGTCACCTGTCAGT
ACCCACGTTCCACGTGTTGTGGCACGTCGCTCGGTAATGATACACAACAC
ACTGCGGTCACGACCTCGAAACAAAAAGGTGTGCCGAAGCTGGGTGATGC
ACGGCAACAGGACGCACCTCTGGAAGGTTTTGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13114:4548..5531+

>mRNA_S-dermatodea_contig13114.1866.1 ID=mRNA_S-dermatodea_contig13114.1866.1|Name=mRNA_S-dermatodea_contig13114.1866.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig13114:4548..5531+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAGGCGAGGGCGATACAGAGGGTACCTGCTTTCCGTGTACGGTAGCTCT
TCTTCTTCCGTTGGCGGAGGTCGCTTCAGTGGACTTATCTCTTCGTCGAG
AGGACATTCCCCCAAACAGGCATCTCGGACAACGGCGATATCGTTGGTCG
TTGGAAGGATCGACACAGAGTCTTTCAGTTGCGGAGCATTTGTTACTGCT
GTACTCTGCACAACAACAAGCAGTGATCTGCTTGTTTCACAGCTGCTCAC
GGCGCACCGCTGAACAACAGCCATGGAGGGGGCGACGCTCTCGTGTTGCC
TTCCCCTGGCCTTCTTGCCTGACGGGGCTCTGGGGTTGACGAGGCGAGGG
CGATACAGAGGGTACCTGCTTTCCGTGTACGGTAGCTCTTCTTCTTCCGT
TGGCGGAGGTCGCTTCAGTGGACTTATCTCTTCGTCGAGAGGACATTCCC
CCAAACAGGCATCTCGGACAACGGCGATATCGTTGGTCGTTGGAAGGATC
GACACAGAGTCTTTCAGTTGCGGAGCATTTGTTACTGCTGTACTCTGCAC
AACAACAAGCAGTGATCTGCTTGTTTCACAGCTGCTCACGGCGCACCGCT
GAACAACAGCCATGGAGGGGGCGACGCTCTCGTGTTGCCTTCCCCTGGCC
TTCTTGCCTGACGGGGCTCTGGGGTTGA
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