|
|
Homology
BLAST of mRNA_S-dermatodea_contig13110.1865.1 vs. uniprot
Match: A0A6H5K372_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K372_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.180e-18 Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 1
Query: 1351 VEAGVEEPHGVNGI---------GEAAVVPDDADGGDGYRGDAAYARLLIAEHLELYFRQQVFNGV-PYLSYSKAQ--------LQPALHAHRELSRTRPDK-VAAVFRETALPCLP 1644
VE G+EE G G+ G ++VV +DA GYRGD AYA LL+AEHLELYFRQQVF+G PYL Y + + L A+H HRE S+TR +K + A+FRETALPC+P
Sbjct: 1192 VEEGIEEEVGCGGVNGEVERDNRGSSSVVDEDAGHDGGYRGDEAYAELLVAEHLELYFRQQVFSGAAPYLLYDEERDGGQQPKDLPRAMHRHREASKTRQEKKLVAMFRETALPCVP 1308
BLAST of mRNA_S-dermatodea_contig13110.1865.1 vs. uniprot
Match: D8LMA8_ECTSI (Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA8_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 1.760e-16 Identity = 56/106 (52.83%), Postives = 70/106 (66.04%), Query Frame = 1
Query: 1378 GVNGI------GEAAVVPDDADGGDGYRGDAAYARLLIAEHLELYFRQQVFNGV-PYLSYSKAQ---------LQPALHAHRELSRTRPDK-VAAVFRETALPCLP 1644
GVNG G ++V +DA+ GYRGD AYA LL+AEHLELYFRQQVF+G PYL Y + + L A+H HRE S+TR +K + A+FRETALPC+P
Sbjct: 1252 GVNGEEERGTRGSSSVEDEDAEHDCGYRGDEAYAELLVAEHLELYFRQQVFSGAAPYLLYDEERDGGGQQPEDLPRAMHRHREASKTRQEKKLVAMFRETALPCVP 1357
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 96.7 |
| Seed ortholog evalue | 4e-17 |
| Seed eggNOG ortholog | 2880.D8LMA8 |
| EggNOG free text desc. | norepinephrine secretion |
| EggNOG OGs | KOG1259@2759,KOG1859@1 |
| COG Functional cat. | P |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1816 |
| Cds size | 1815 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig13110.1865.1 >prot_S-dermatodea_contig13110.1865.1 ID=prot_S-dermatodea_contig13110.1865.1|Name=mRNA_S-dermatodea_contig13110.1865.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=605bp
SVPPTGVTAAAPDDGSVAPPTPLRRSTDATRERYGGRRRRGTRAVVIEEP GSPRATLALASGLGGELVPDLRQQSLSFCTVPLPTEDTEHRPRSEHAENE GGGRIKHSRGERNPEIVPEAEEKETPAEGFHARRRSLSLVGEADGDETKI VKIQGIRPADLDRIEGIPASPEKPPERPREFVDTPPLPALLLRDPHIDYD RERAPLVQPLPFLIRARTSDEVRSDVDSPKSGAGDGDVVAVDDFDEKLPP DAPLGVIPGRLVSAPVAASPAKGHVSSDSGGARVDPIQPPQSPLTREDSG IQRKTGARQEGPPPDDGCGKPGSRGGPNVGVAPGDVREIALGVFSTSEKK ENGMLDSRGLGGYPRDRLAAGLSRSAVDAPATREHDSVASDPETEQEQRP EARAGAAEAPDSAEPITVIVPAEGATKEPADGAEIDSSGSVARPSSTSVT VEAGVEEPHGVNGIGEAAVVPDDADGGDGYRGDAAYARLLIAEHLELYFR QQVFNGVPYLSYSKAQLQPALHAHRELSRTRPDKVAAVFRETALPCLPDL PWGSVSPVSPGPTGGSSGSNMSDNRRRGVLGGSSRRRAAEELAAAGMAQT VRRRG back to topmRNA from alignment at S-dermatodea_contig13110:3091..6354+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig13110.1865.1 ID=mRNA_S-dermatodea_contig13110.1865.1|Name=mRNA_S-dermatodea_contig13110.1865.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3264bp|location=Sequence derived from alignment at S-dermatodea_contig13110:3091..6354+ (Saccorhiza dermatodea SderLu1190fm monoicous) TCTGTTCCGCCCACAGGCGTCACCGCGGCAGCGCCAGATGACGGAAGCGT
CGCGCCCCCCACACCGCTACGCAGAAGCACCGACGCCACACGAGAAAGGT
ACGGAGGTCGTAGACGACGAGGCACTCGCGCGGTCGTTATCGAAGAGCCG
GGCTCGCCTAGGGCAACTTTGGCGCTGGCTTCAGGCCTCGGCGGGGAGCT
TGTGCCCGACTTGAGACAGCAGTCGCTATCGTTTTGCACGGTCCCGCTGC
CAACGGAAGATACCGAGCACCGGCCGCGGAGCGAACACGCTGAGAATGAG
GTGAGGCTCGTGTGGCCGTAGCGCATGTCGAGTGGTTCGGTGTCTCTCGG
CGAATATCGTTTGGGCGCAGGAAAGACCGGCAGCACCGAGCGGTTATGGT
GTTGTGACTTCGTGGGTGGCTTTACGTGGCTGTGCCTTATGTCCGCTTCT
TGCTACGCTCGGTTGTTTCACTCGCAGCCTTTTACGAGTTCCTCGAGGCG
CCTGTGTTCGTGTGTATGGAGAAGTGGGTATGTGACGAGTAGCTCCAGGT
TGGTATATTTCGGCATGGGACGTCTTTTGCACTGGCCGTACTTGATGGGC
GCCTCGAGGAATTTGCCACTGAGATTTTGCCCATCCCTGCTCCTTCCCGC
GTGTTACTCTTTTTTTTCATCCGTCAATTACTTGCTACATCAGGGTGGTG
GGCGAATAAAGCATTCCCGCGGGGAACGAAACCCTGAAATCGTCCCGGAG
GCCGAGGAGAAGGAGACCCCGGCGGAGGGCTTCCATGCGCGCAGGCGTTC
GCTGTCGTTGGTGGGCGAAGCTGATGGCGACGAGACCAAGATCGTCAAGA
TTCAGGTGAGGAAGGAGATTGCCCAGTGCTTACTGCTCGGTTGGGGATCT
GTAGATGCGCCTTTCTTTGCCCTTGTGATCGTTCGGTCTGGATAGTCACG
TCTTGCCGACAGTCTTGAATGGTTCAATTCGATTCCCGACTAGCGCATGC
CTTCGATTTTCGTCGCGCGTAAATCCTTCGCCTCTCTGATGTACGCATAT
ACCTGTGCGGTGGCCGACCCGATAGCTGACGCTGGTGCTTGCGTTTCGAA
ACCATCTGCGTGACGAAACTGGGTTGTGCAGTCCCACGTGTTTCCATGAG
CCAGTAAATTTGCTATTTCACAGCAGCGAGAGAGGTGCGCTCCATCTTTG
TCCGCTGACTCCTCTGTGGCATGTTTCGTCCTATGGCGGCCCTTGCGCTT
ATGCCTAATAACCGAAAAATCGCGGATACCAGCACGCCCTTGTATGCAGA
ACTTACTCATGGATGCCAACTTAAGAACTTGTAGTAATTTGACAACACTG
ACGAATAGGTACGGTTTTACCATCTACTGTATTAACGGGTTCGCCTGGAC
GAAAGCCACACCGTGTAACCAGTCAACCCTCCCGCCTTGTTTCGTTGCCT
CTACTGGTCCTGTCACGCACTACCTTCGGCTACTCGTGGGTCGTCGCCCT
CCTCTCGACTAATATTTCAACAGGGGATCCGTCCCGCCGACTTGGACCGG
ATCGAGGGCATACCTGCATCACCAGAAAAGCCCCCGGAGCGGCCGCGAGA
GTTTGTCGACACGCCGCCACTGCCAGCACTACTGCTTCGCGACCCACACA
TCGACTACGACCGCGAACGAGCTCCGCTGGTGCAACCGCTGCCTTTTCTC
ATACGGGCCCGAACGAGTGACGAGGTCCGTTCGGATGTCGATTCTCCGAA
GAGCGGCGCCGGTGATGGTGACGTTGTTGCCGTAGACGATTTCGACGAGA
AGCTCCCTCCTGATGCCCCTCTCGGAGTTATTCCCGGGAGACTCGTCAGT
GCTCCCGTTGCAGCGTCACCGGCGAAAGGACATGTCTCATCTGACTCGGG
TGGGGCCCGCGTCGATCCGATTCAACCGCCACAGTCACCGCTCACGCGAG
AGGACAGCGGGATTCAAAGAAAAACCGGGGCACGACAAGAGGGACCCCCT
CCCGACGATGGGTGCGGAAAACCTGGATCTCGCGGCGGGCCGAATGTGGG
AGTGGCGCCGGGGGATGTGCGGGAGATTGCGCTCGGCGTTTTTTCTACCT
CGGAAAAAAAGGAGAACGGGATGCTCGACTCAAGGGGCCTTGGGGGATAT
CCGAGAGACCGCCTTGCGGCTGGGTTAAGCCGTAGTGCTGTAGATGCGCC
AGCCACCCGCGAACACGATTCTGTCGCGAGTGACCCCGAAACGGAACAGG
AGCAACGACCCGAGGCTCGCGCGGGGGCTGCGGAAGCGCCCGACTCTGCC
GAGCCGATCACGGTCATTGTCCCCGCGGAAGGTGCGACAAAGGAACCTGC
GGATGGCGCTGAAATCGACAGTAGTGGTAGCGTGGCGCGCCCTAGCTCTA
CGTCGGTAACCGTAGAGGCGGGCGTCGAGGAGCCGCATGGCGTGAATGGG
ATCGGGGAGGCCGCCGTGGTGCCGGATGACGCTGATGGTGGCGACGGCTA
CCGTGGAGATGCGGCGTACGCGCGTCTATTGATCGCGGAACACCTCGAGC
TTTACTTTCGACAGCAGGTGCGCATTCATGCCCGTCATCATGCGCATGTT
GCAAGTTCGGGGCACGGGGGTTGCGTCCGCATATTTGGTAGGCTCATCGC
CGTGTTGGAATTATTCCTGCCGTTAGTGTGCAGTGTGTACAACAGGGGTC
CGACGATTGAATGACTCATGTTGTTCCTAAAAGTTGCACGAACTGAGTCG
AGTTTCGCCTCTATGCCTACCCTTTGTCTTCCTACGTTGGTTGCGGTGAT
TTTTTACTTACTTTTCCCGAAGACAGTTGTAAACCAGAGAGTCACAAAAA
CATGCGGTTGGGTTTATAAATAGCGGACTTCAAAATAATGATAACTTACC
CCCCCCTCCCCCCCCCGACCCGCCCCACCCTCTACACCTGTGCTGCCCCA
CCAAGGTATTCAACGGTGTACCATATTTGTCCTACAGCAAGGCCCAACTA
CAGCCGGCCCTGCACGCTCACCGGGAGCTGTCTAGGACCCGTCCCGACAA
GGTGGCGGCCGTGTTCCGGGAGACAGCGCTACCGTGCCTACCCGATCTGC
CCTGGGGTTCCGTCTCTCCCGTGTCGCCGGGGCCCACAGGCGGCAGCAGC
GGTAGCAACATGAGCGACAACCGTCGCCGCGGAGTTTTGGGGGGCTCGTC
AAGACGGCGGGCGGCAGAAGAGTTAGCGGCCGCCGGGATGGCGCAGACCG
TGCGCCGGAGGGGC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig13110:3091..6354+ >mRNA_S-dermatodea_contig13110.1865.1 ID=mRNA_S-dermatodea_contig13110.1865.1|Name=mRNA_S-dermatodea_contig13110.1865.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3630bp|location=Sequence derived from alignment at S-dermatodea_contig13110:3091..6354+ (Saccorhiza dermatodea SderLu1190fm monoicous) TCTGTTCCGCCCACAGGCGTCACCGCGGCAGCGCCAGATGACGGAAGCGT CGCGCCCCCCACACCGCTACGCAGAAGCACCGACGCCACACGAGAAAGGT ACGGAGGTCGTAGACGACGAGGCACTCGCGCGGTCGTTATCGAAGAGCCG GGCTCGCCTAGGGCAACTTTGGCGCTGGCTTCAGGCCTCGGCGGGGAGCT TGTGCCCGACTTGAGACAGCAGTCGCTATCGTTTTGCACGGTCCCGCTGC CAACGGAAGATACCGAGCACCGGCCGCGGAGCGAACACGCTGAGAATGAG TCTGTTCCGCCCACAGGCGTCACCGCGGCAGCGCCAGATGACGGAAGCGT CGCGCCCCCCACACCGCTACGCAGAAGCACCGACGCCACACGAGAAAGGT ACGGAGGTCGTAGACGACGAGGCACTCGCGCGGTCGTTATCGAAGAGCCG GGCTCGCCTAGGGCAACTTTGGCGCTGGCTTCAGGCCTCGGCGGGGAGCT TGTGCCCGACTTGAGACAGCAGTCGCTATCGTTTTGCACGGTCCCGCTGC CAACGGAAGATACCGAGCACCGGCCGCGGAGCGAACACGCTGAGAATGAG GGTGGTGGGCGAATAAAGCATTCCCGCGGGGAACGAAACCCTGAAATCGT CCCGGAGGCCGAGGAGAAGGAGACCCCGGCGGAGGGCTTCCATGCGCGCA GGCGTTCGCTGTCGTTGGTGGGCGAAGCTGATGGCGACGAGACCAAGATC GTCAAGATTCAGGGTGGTGGGCGAATAAAGCATTCCCGCGGGGAACGAAA CCCTGAAATCGTCCCGGAGGCCGAGGAGAAGGAGACCCCGGCGGAGGGCT TCCATGCGCGCAGGCGTTCGCTGTCGTTGGTGGGCGAAGCTGATGGCGAC GAGACCAAGATCGTCAAGATTCAGGGGATCCGTCCCGCCGACTTGGACCG GATCGAGGGCATACCTGCATCACCAGAAAAGCCCCCGGAGCGGCCGCGAG AGTTTGTCGACACGCCGCCACTGCCAGCACTACTGCTTCGCGACCCACAC ATCGACTACGACCGCGAACGAGCTCCGCTGGTGCAACCGCTGCCTTTTCT CATACGGGCCCGAACGAGTGACGAGGTCCGTTCGGATGTCGATTCTCCGA AGAGCGGCGCCGGTGATGGTGACGTTGTTGCCGTAGACGATTTCGACGAG AAGCTCCCTCCTGATGCCCCTCTCGGAGTTATTCCCGGGAGACTCGTCAG TGCTCCCGTTGCAGCGTCACCGGCGAAAGGACATGTCTCATCTGACTCGG GTGGGGCCCGCGTCGATCCGATTCAACCGCCACAGTCACCGCTCACGCGA GAGGACAGCGGGATTCAAAGAAAAACCGGGGCACGACAAGAGGGACCCCC TCCCGACGATGGGTGCGGAAAACCTGGATCTCGCGGCGGGCCGAATGTGG GAGTGGCGCCGGGGGATGTGCGGGAGATTGCGCTCGGCGTTTTTTCTACC TCGGAAAAAAAGGAGAACGGGATGCTCGACTCAAGGGGCCTTGGGGGATA TCCGAGAGACCGCCTTGCGGCTGGGTTAAGCCGTAGTGCTGTAGATGCGC CAGCCACCCGCGAACACGATTCTGTCGCGAGTGACCCCGAAACGGAACAG GAGCAACGACCCGAGGCTCGCGCGGGGGCTGCGGAAGCGCCCGACTCTGC CGAGCCGATCACGGTCATTGTCCCCGCGGAAGGTGCGACAAAGGAACCTG CGGATGGCGCTGAAATCGACAGTAGTGGTAGCGTGGCGCGCCCTAGCTCT ACGTCGGTAACCGTAGAGGCGGGCGTCGAGGAGCCGCATGGCGTGAATGG GATCGGGGAGGCCGCCGTGGTGCCGGATGACGCTGATGGTGGCGACGGCT ACCGTGGAGATGCGGCGTACGCGCGTCTATTGATCGCGGAACACCTCGAG CTTTACTTTCGACAGCAGGGGATCCGTCCCGCCGACTTGGACCGGATCGA GGGCATACCTGCATCACCAGAAAAGCCCCCGGAGCGGCCGCGAGAGTTTG TCGACACGCCGCCACTGCCAGCACTACTGCTTCGCGACCCACACATCGAC TACGACCGCGAACGAGCTCCGCTGGTGCAACCGCTGCCTTTTCTCATACG GGCCCGAACGAGTGACGAGGTCCGTTCGGATGTCGATTCTCCGAAGAGCG GCGCCGGTGATGGTGACGTTGTTGCCGTAGACGATTTCGACGAGAAGCTC CCTCCTGATGCCCCTCTCGGAGTTATTCCCGGGAGACTCGTCAGTGCTCC CGTTGCAGCGTCACCGGCGAAAGGACATGTCTCATCTGACTCGGGTGGGG CCCGCGTCGATCCGATTCAACCGCCACAGTCACCGCTCACGCGAGAGGAC AGCGGGATTCAAAGAAAAACCGGGGCACGACAAGAGGGACCCCCTCCCGA CGATGGGTGCGGAAAACCTGGATCTCGCGGCGGGCCGAATGTGGGAGTGG CGCCGGGGGATGTGCGGGAGATTGCGCTCGGCGTTTTTTCTACCTCGGAA AAAAAGGAGAACGGGATGCTCGACTCAAGGGGCCTTGGGGGATATCCGAG AGACCGCCTTGCGGCTGGGTTAAGCCGTAGTGCTGTAGATGCGCCAGCCA CCCGCGAACACGATTCTGTCGCGAGTGACCCCGAAACGGAACAGGAGCAA CGACCCGAGGCTCGCGCGGGGGCTGCGGAAGCGCCCGACTCTGCCGAGCC GATCACGGTCATTGTCCCCGCGGAAGGTGCGACAAAGGAACCTGCGGATG GCGCTGAAATCGACAGTAGTGGTAGCGTGGCGCGCCCTAGCTCTACGTCG GTAACCGTAGAGGCGGGCGTCGAGGAGCCGCATGGCGTGAATGGGATCGG GGAGGCCGCCGTGGTGCCGGATGACGCTGATGGTGGCGACGGCTACCGTG GAGATGCGGCGTACGCGCGTCTATTGATCGCGGAACACCTCGAGCTTTAC TTTCGACAGCAGGTATTCAACGGTGTACCATATTTGTCCTACAGCAAGGC CCAACTACAGCCGGCCCTGCACGCTCACCGGGAGCTGTCTAGGACCCGTC CCGACAAGGTGGCGGCCGTGTTCCGGGAGACAGCGCTACCGTGCCTACCC GATCTGCCCTGGGGTTCCGTCTCTCCCGTGTCGCCGGGGCCCACAGGCGG CAGCAGCGGTAGCAACATGAGCGACAACCGTCGCCGCGGAGTTTTGGGGG GCTCGTCAAGACGGCGGGCGGCAGAAGAGTTAGCGGCCGCCGGGATGGCG CAGACCGTGCGCCGGAGGGGCGTATTCAACGGTGTACCATATTTGTCCTA CAGCAAGGCCCAACTACAGCCGGCCCTGCACGCTCACCGGGAGCTGTCTA GGACCCGTCCCGACAAGGTGGCGGCCGTGTTCCGGGAGACAGCGCTACCG TGCCTACCCGATCTGCCCTGGGGTTCCGTCTCTCCCGTGTCGCCGGGGCC CACAGGCGGCAGCAGCGGTAGCAACATGAGCGACAACCGTCGCCGCGGAG TTTTGGGGGGCTCGTCAAGACGGCGGGCGGCAGAAGAGTTAGCGGCCGCC GGGATGGCGCAGACCGTGCGCCGGAGGGGC back to top
|