mRNA_S-dermatodea_contig13105.1860.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13105.1860.1
Unique NamemRNA_S-dermatodea_contig13105.1860.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13105.1860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13105contigS-dermatodea_contig13105:803..3092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size580
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924273.860717-CDS-S-dermatodea_contig13105:803..11131622924273.860717-CDS-S-dermatodea_contig13105:803..1113Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13105 804..1113 -
1694079142.4554732-CDS-S-dermatodea_contig13105:803..11131694079142.4554732-CDS-S-dermatodea_contig13105:803..1113Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13105 804..1113 -
1622924273.8732457-CDS-S-dermatodea_contig13105:2823..30921622924273.8732457-CDS-S-dermatodea_contig13105:2823..3092Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13105 2824..3092 -
1694079142.4654965-CDS-S-dermatodea_contig13105:2823..30921694079142.4654965-CDS-S-dermatodea_contig13105:2823..3092Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13105 2824..3092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13105.1860.1prot_S-dermatodea_contig13105.1860.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13105 804..3092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13105.1860.1

>prot_S-dermatodea_contig13105.1860.1 ID=prot_S-dermatodea_contig13105.1860.1|Name=mRNA_S-dermatodea_contig13105.1860.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=193bp
RWADPCFGVWTQWPLPPTSHVCASLNRDILPHSAPQGRDFRRYNLAGWAL
HRKNKMAVWTTTSLSLTLLIMAVLRSGERSGSSVAASVLRSKASELAFAL
PRPPTVPSTRATGTKEPTRHISPLPPSARPLCRSWQPTDLAATASVRLSG
EGGIVGWGGRWSGWRMVASSRKRPPSSQRRRSTAAAAAQTKVR
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mRNA from alignment at S-dermatodea_contig13105:803..3092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13105.1860.1 ID=mRNA_S-dermatodea_contig13105.1860.1|Name=mRNA_S-dermatodea_contig13105.1860.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2290bp|location=Sequence derived from alignment at S-dermatodea_contig13105:803..3092- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTTGGGCAGACCCGTGCTTCGGCGTGTGGACTCAGTGGCCCCTACCCCC
GACGTCGCACGTGTGCGCTAGCTTGAATCGAGACATATTGCCGCATTCTG
CGCCCCAGGGGCGGGATTTTCGGCGCTACAATTTGGCAGGGTGGGCGTTG
CACAGGAAAAACAAGATGGCAGTCTGGACAACGACCTCCCTATCACTGAC
CCTACTGATAATGGCGGTGCTCCGGTCAGGAGAGAGGTCGGGCTCCTCCG
TTGCAGCAAGTGTTTTAAGGTGGGTGGGGAAGAGGAGGCCATCGAACGGT
GGAAGGCGAGAGCTCCCTGTGCGTAAACGCGTCTCAAGTTCGGCTTTATT
TCCGCCGGTTTTGGGTTTTGGGTACAAAAACGTAAACGCTCCGCATTTAG
GCGATCTACGACGGCGTCAGTCACATTATATAATATGTCGTTGTCATATC
AACTCTATCTTTATCATATGAGTATAACGTCAGCTTGTTCAATGATGTTC
ACATGTATGCAAGCATACAATCCACCGCCGAAATCCCGTTGCACCAACAA
CTCGAATGGTGATGCATGGGCGGACCGGTGACTTCCTTGCTCTGAATGCT
CTGAATATTTATCTTGATAAGAAAAACCGTAAGGCCGGTGCTCCCGCTCT
TAGGTGCTCGTTTCAGCTCCGTCAGAAGCACAGCTAGAGGAGGATAAATA
CTTTGGTCTGTTCAGGTTCCGATTCGCCGTCTGACTCGATTGACAGCATG
GGTACACATTTGTACATACAATGCATACGTATGGCCATGTGCATTGGCGC
CTGTGTGGCACCATAAGCACACCCGTGCCGTTACAGGATCGGGATTTTCT
CGAGTATTCTCTTATATAAATACCGTACAGCAGTGTTTCTTTTCGAGCTT
CGATCCCCGGCGAGTTGAGTGTGGTTCTCCCCCATAATGTGGAAATTGTG
CTCAGGGCCGTTGGGTGTTTGGAACCGACGCATCTGCGAGAAAACCTTGC
TTGTACCGCCGTGTACATGGTATGCCGCATCCTATCTTATCGTATTTCGT
ACATAGACGGCCGTGTAAATTTGCGCTCTGCACGTAGCACATACTGTAGC
ACATTTGTTGCAGGGCGAAGACAAGCGCGCGCCTACATGTATTAATATAC
TAGCAATTACTTGTACTGTACGGTCAATACATATGTCGCTACAGAGTACT
ATGATATTAATAAAACCAATACAAGGGTCGCTATTACAACGTTACAACCA
ATCGCTTGTCGGTTTCAATCCAATTGTACACGTACATGCACGTTCTTTTG
TACCCTCTTTACGTTCATGTTGATGCCATCGTGGCATATGATACAGCAGT
GCTAGATAATGTTTGTTCGAGCTTTTGACTGACACAGCCTGTCATGCTGT
GGTGTTATCACAGCGGCTCTTTGAGTGCGGATCAATATCGGCTGCACTAC
AAGTACACGCACGTCTGATATCAACAAAAGCATTTCGTATTGATAGCGCT
AAACGTATTCAATAGGTCTGATTGAATAGAAGGAAAGTTTAACGGTACCT
GTAGAGTATAGTAGTAACAGTAAGTGTTTGTGCACACGCTGCCCCGGAAT
TGACGGGCTTGATGAACAGCAAGATGACGTCAAACCTTCAAAGCAATAAA
ATAGACATACCATATAATACAAAGTGCAGGATTCAGACCGATGCATCTGT
CCGTCTACCTGTTTCATCGCGAAGGGGAAATGCTCATCAGGATAGCCTGG
CAATCTGCTTCCGTTCTTCGGGACATTCGCTCATGTTTTAGCAAGCGCGA
CGGATATACAGTGTATCGTAGAGTGATCGAGTGCCCCTCTTTCACGAGTC
ATGGGAAACTACTGTAAACATCATGTAACCACGCAAAACCTATCCGCCTT
TAGTCACCGGAATCTAACGGTCGGAGGCACTCGCCCGTTTCCTCATTCCT
CCATCGCAACCCTCATGTGAACCCGCCAGGTCCAAAGCTTCCGAGCTGGC
GTTCGCTTTGCCTCGACCGCCAACGGTTCCTTCCACAAGAGCCACTGGCA
CGAAAGAGCCGACACGGCATATCAGCCCGCTGCCTCCATCAGCTAGGCCG
TTGTGTAGGTCATGGCAGCCGACCGATTTAGCGGCGACAGCGTCCGTCAG
ATTGTCGGGAGAAGGAGGGATCGTGGGGTGGGGCGGTCGGTGGTCAGGAT
GGCGGATGGTGGCGTCGAGCCGGAAACGGCCGCCATCGTCACAGCGGCGT
CGTTCAACGGCTGCTGCGGCTGCGCAAACGAAGGTCCGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13105:803..3092-

>mRNA_S-dermatodea_contig13105.1860.1 ID=mRNA_S-dermatodea_contig13105.1860.1|Name=mRNA_S-dermatodea_contig13105.1860.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at S-dermatodea_contig13105:803..3092- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTTGGGCAGACCCGTGCTTCGGCGTGTGGACTCAGTGGCCCCTACCCCC
GACGTCGCACGTGTGCGCTAGCTTGAATCGAGACATATTGCCGCATTCTG
CGCCCCAGGGGCGGGATTTTCGGCGCTACAATTTGGCAGGGTGGGCGTTG
CACAGGAAAAACAAGATGGCAGTCTGGACAACGACCTCCCTATCACTGAC
CCTACTGATAATGGCGGTGCTCCGGTCAGGAGAGAGGTCGGGCTCCTCCG
TTGCAGCAAGTGTTTTAAGCGTTGGGCAGACCCGTGCTTCGGCGTGTGGA
CTCAGTGGCCCCTACCCCCGACGTCGCACGTGTGCGCTAGCTTGAATCGA
GACATATTGCCGCATTCTGCGCCCCAGGGGCGGGATTTTCGGCGCTACAA
TTTGGCAGGGTGGGCGTTGCACAGGAAAAACAAGATGGCAGTCTGGACAA
CGACCTCCCTATCACTGACCCTACTGATAATGGCGGTGCTCCGGTCAGGA
GAGAGGTCGGGCTCCTCCGTTGCAGCAAGTGTTTTAAGGTCCAAAGCTTC
CGAGCTGGCGTTCGCTTTGCCTCGACCGCCAACGGTTCCTTCCACAAGAG
CCACTGGCACGAAAGAGCCGACACGGCATATCAGCCCGCTGCCTCCATCA
GCTAGGCCGTTGTGTAGGTCATGGCAGCCGACCGATTTAGCGGCGACAGC
GTCCGTCAGATTGTCGGGAGAAGGAGGGATCGTGGGGTGGGGCGGTCGGT
GGTCAGGATGGCGGATGGTGGCGTCGAGCCGGAAACGGCCGCCATCGTCA
CAGCGGCGTCGTTCAACGGCTGCTGCGGCTGCGCAAACGAAGGTCCGAGT
CCAAAGCTTCCGAGCTGGCGTTCGCTTTGCCTCGACCGCCAACGGTTCCT
TCCACAAGAGCCACTGGCACGAAAGAGCCGACACGGCATATCAGCCCGCT
GCCTCCATCAGCTAGGCCGTTGTGTAGGTCATGGCAGCCGACCGATTTAG
CGGCGACAGCGTCCGTCAGATTGTCGGGAGAAGGAGGGATCGTGGGGTGG
GGCGGTCGGTGGTCAGGATGGCGGATGGTGGCGTCGAGCCGGAAACGGCC
GCCATCGTCACAGCGGCGTCGTTCAACGGCTGCTGCGGCTGCGCAAACGA
AGGTCCGA
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