mRNA_S-dermatodea_contig13100.1858.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13100.1858.1
Unique NamemRNA_S-dermatodea_contig13100.1858.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13100.1858.1 vs. uniprot
Match: D8LS16_ECTSI (Hypothetical conserved protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS16_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.040e-13
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   28 QVIKNPTEEQIQTLGARSWPTWGCGVSKFPWTYE 129
            +V K+P+EE+I+ LGARSWPTWGCGVSKFPWTYE
Sbjct:   62 KVTKDPSEEEIKALGARSWPTWGCGVSKFPWTYE 95
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BLAST of mRNA_S-dermatodea_contig13100.1858.1 vs. uniprot
Match: A0A7S0WR75_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WR75_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 6.410e-11
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   31 VIKNPTEEQIQTLGARSWPTWGCGVSKFPWTYE 129
            V + P E++++ LG RSWPTWGCGVSKFPWTY+
Sbjct:   41 VTRTPPEDKLKALGVRSWPTWGCGVSKFPWTYQ 73
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BLAST of mRNA_S-dermatodea_contig13100.1858.1 vs. uniprot
Match: A0A2K3E5N5_CHLRE (Cupin_3 domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E5N5_CHLRE)

HSP 1 Score: 60.5 bits (145), Expect = 1.800e-10
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   31 VIKNPTEEQIQTLGARSWPTWGCGVSKFPWTYE 129
            V +NP E+ ++  G RSWPTWGCGVSKFPWTY+
Sbjct:   25 VQRNPAEDVLKAKGVRSWPTWGCGVSKFPWTYQ 57
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BLAST of mRNA_S-dermatodea_contig13100.1858.1 vs. uniprot
Match: A0A835WGC9_9CHLO (Cupin_3 domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WGC9_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 5.840e-10
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   31 VIKNPTEEQIQTLGARSWPTWGCGVSKFPWTYEAS 135
            V +NP+EE ++  G   WPTWGCGVSKFPWTY+ S
Sbjct:   31 VQRNPSEEVLKAKGVHGWPTWGCGVSKFPWTYQES 65
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BLAST of mRNA_S-dermatodea_contig13100.1858.1 vs. uniprot
Match: A0A8J4GV04_9CHLO (Cupin_3 domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GV04_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 7.060e-10
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   31 VIKNPTEEQIQTLGARSWPTWGCGVSKFPWTYE 129
            V + P E+ I+  G RSWPTWGCGVSKFPWTY+
Sbjct:   33 VHRQPAEDVIKAKGVRSWPTWGCGVSKFPWTYK 65
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BLAST of mRNA_S-dermatodea_contig13100.1858.1 vs. uniprot
Match: A0A8J4LY75_9CHLO (Cupin_3 domain-containing protein n=4 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4LY75_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 1.250e-9
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   31 VIKNPTEEQIQTLGARSWPTWGCGVSKFPWTYE 129
            V + P E+ I+  G RSWPTWGCGVSKFPWTY+
Sbjct:   33 VHRQPAEDVIKAKGVRSWPTWGCGVSKFPWTYK 65
[Close]
BLAST of mRNA_S-dermatodea_contig13100.1858.1 vs. uniprot
Match: A0A2J8A9I3_9CHLO (Cupin_3 domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A9I3_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 1.250e-9
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   13 SSVHHQVIKNPTEEQIQTLGARSWPTWGCGVSKFPWTYEAS 135
            ++V   V + P+EE ++  G RSWPTWGCGVS FPWTY+ S
Sbjct:   28 AAVQVVVQRQPSEEVLKAKGVRSWPTWGCGVSTFPWTYQES 68
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BLAST of mRNA_S-dermatodea_contig13100.1858.1 vs. uniprot
Match: A0A7T1HYH3_9SYNE (Cupin domain-containing protein n=4 Tax=Synechococcus sp. CBW1004 TaxID=1353136 RepID=A0A7T1HYH3_9SYNE)

HSP 1 Score: 57.8 bits (138), Expect = 1.670e-9
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:   31 VIKNPTEEQIQTLGARSWPTWGCGVSKFPWTYE 129
            V  NP   ++Q+LG  SWPTWGCGVS FPWTY+
Sbjct:   16 VTSNPDPAELQSLGVTSWPTWGCGVSTFPWTYD 48
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BLAST of mRNA_S-dermatodea_contig13100.1858.1 vs. uniprot
Match: A0A150FWA4_GONPE (Cupin_3 domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FWA4_GONPE)

HSP 1 Score: 57.4 bits (137), Expect = 3.240e-9
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   31 VIKNPTEEQIQTLGARSWPTWGCGVSKFPWTYE 129
            V + P E+ ++  G RSWPTWGCGVSKFPWTY+
Sbjct:   30 VQRQPGEDVLKAKGVRSWPTWGCGVSKFPWTYQ 62
[Close]
BLAST of mRNA_S-dermatodea_contig13100.1858.1 vs. uniprot
Match: D8TZQ8_VOLCA (Cupin_3 domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TZQ8_VOLCA)

HSP 1 Score: 57.0 bits (136), Expect = 4.890e-9
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   31 VIKNPTEEQIQTLGARSWPTWGCGVSKFPWTYEAS 135
            V + P+E  ++  G R WPTWGCGVSKFPWTY+ S
Sbjct:   33 VQRQPSENVLEAKGVRRWPTWGCGVSKFPWTYQES 67
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13100.1858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS16_ECTSI1.040e-1379.41Hypothetical conserved protein n=1 Tax=Ectocarpus ... [more]
A0A7S0WR75_9CHLO6.410e-1166.67Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A2K3E5N5_CHLRE1.800e-1066.67Cupin_3 domain-containing protein n=3 Tax=Chlamydo... [more]
A0A835WGC9_9CHLO5.840e-1062.86Cupin_3 domain-containing protein n=1 Tax=Chlamydo... [more]
A0A8J4GV04_9CHLO7.060e-1066.67Cupin_3 domain-containing protein n=1 Tax=Volvox r... [more]
A0A8J4LY75_9CHLO1.250e-966.67Cupin_3 domain-containing protein n=4 Tax=Volvox r... [more]
A0A2J8A9I3_9CHLO1.250e-956.10Cupin_3 domain-containing protein n=1 Tax=Tetrabae... [more]
A0A7T1HYH3_9SYNE1.670e-963.64Cupin domain-containing protein n=4 Tax=Synechococ... [more]
A0A150FWA4_GONPE3.240e-963.64Cupin_3 domain-containing protein n=1 Tax=Gonium p... [more]
D8TZQ8_VOLCA4.890e-960.00Cupin_3 domain-containing protein n=1 Tax=Volvox c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13100contigS-dermatodea_contig13100:4126..4287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue6.2e-10
Seed eggNOG ortholog2880.D8LS16
KEGG koko:K06995
EggNOG free text desc.Protein of unknown function (DUF861)
EggNOG OGs2S172@2759,COG3450@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical conserved protein
Ec32 orthologEc-08_001770.1
Exons1
Model size162
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924273.7538552-CDS-S-dermatodea_contig13100:4125..42871622924273.7538552-CDS-S-dermatodea_contig13100:4125..4287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13100 4126..4287 +
1694079142.400787-CDS-S-dermatodea_contig13100:4125..42871694079142.400787-CDS-S-dermatodea_contig13100:4125..4287Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13100 4126..4287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13100.1858.1prot_S-dermatodea_contig13100.1858.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13100 4126..4287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13100.1858.1

>prot_S-dermatodea_contig13100.1858.1 ID=prot_S-dermatodea_contig13100.1858.1|Name=mRNA_S-dermatodea_contig13100.1858.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
MISDSSVHHQVIKNPTEEQIQTLGARSWPTWGCGVSKFPWTYEASTFPSQ
SSTG
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mRNA from alignment at S-dermatodea_contig13100:4126..4287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13100.1858.1 ID=mRNA_S-dermatodea_contig13100.1858.1|Name=mRNA_S-dermatodea_contig13100.1858.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at S-dermatodea_contig13100:4126..4287+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATTTCGGATTCGTCTGTCCACCATCAGGTGATCAAAAACCCGACCGA
GGAACAGATCCAGACTCTGGGCGCGAGGAGCTGGCCCACCTGGGGCTGCG
GTGTCTCCAAGTTCCCGTGGACGTACGAGGCGAGTACATTTCCGTCTCAG
TCTAGTACAGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig13100:4126..4287+

>mRNA_S-dermatodea_contig13100.1858.1 ID=mRNA_S-dermatodea_contig13100.1858.1|Name=mRNA_S-dermatodea_contig13100.1858.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig13100:4126..4287+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATTTCGGATTCGTCTGTCCACCATCAGGTGATCAAAAACCCGACCGA
GGAACAGATCCAGACTCTGGGCGCGAGGAGCTGGCCCACCTGGGGCTGCG
GTGTCTCCAAGTTCCCGTGGACGTACGAGGCGAGTACATTTCCGTCTCAG
TCTAGTACAGGTATGATTTCGGATTCGTCTGTCCACCATCAGGTGATCAA
AAACCCGACCGAGGAACAGATCCAGACTCTGGGCGCGAGGAGCTGGCCCA
CCTGGGGCTGCGGTGTCTCCAAGTTCCCGTGGACGTACGAGGCGAGTACA
TTTCCGTCTCAGTCTAGTACAGGT
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