mRNA_S-dermatodea_contig13071.1850.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: D7FJL3_ECTSI (Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL3_ECTSI) HSP 1 Score: 322 bits (826), Expect = 1.140e-99 Identity = 168/238 (70.59%), Postives = 191/238 (80.25%), Query Frame = 2
Query: 2 RDLSSPYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAECESRRSLCPPGMKPLSERPAPVEVSVPKAVVFRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPNRSVGVVMGVDQPTIVDSGSEDDWSD 715
RDLSSPYSTKTVDSSNGLLLP+F EA GLLLLAGRGG G+KYYELS D ++ P FCHE+KA GDPLSG+ALLPPQCL++ VEVARLLRLT TSVEPVS MLPRS D+K +FQD +YR VRSS PC S +WL GG+ +E SL P GM+PLSERP P +V+VPKAV+FRQ+MEQR++EEK AAD MAKMT LANQNAEYNPN SV MGVDQ TI+DSGSE +WSD
Sbjct: 736 RDLSSPYSTKTVDSSNGLLLPMFCEATGLLLLAGRGGSGIKYYELS--DSGGTSAPSAQFCHEYKAEGDPLSGLALLPPQCLDVASVEVARLLRLTSTSVEPVSLMLPRSADMKGFFQDGIYRSVRSSTPCQTSAEWLSGGTPSVSEGGGLTSLRPEGMQPLSERPLPSDVAVPKAVIFRQQMEQREQEEKHAADTMAKMTTLANQNAEYNPNLSVA--MGVDQATILDSGSEGEWSD 969
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: A0A485L961_9STRA (Coronin n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L961_9STRA) HSP 1 Score: 141 bits (356), Expect = 4.520e-34 Identity = 89/238 (37.39%), Postives = 127/238 (53.36%), Query Frame = 2
Query: 2 RDLSSPYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAECESRRSLCPPGMKPLSERPAPVEVSVPKAVVFRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPNRSVGVVMGVDQPTIVDSGSEDDWSD 715
R+L P +T T+D+S +LLP + E++ ++ L GRG + YE+ G +L C G P++ A+LP +C NI+ VEVARLL LT T++EP+SF LPR+ LK+YFQDD+Y VR S PC S W G + D SL PPGM LSER V VPK V F+ + ++ +E+K ++ ++ LA Q ++ G D+ ED W D
Sbjct: 681 RNLLDPLTTTTIDTSGSILLPFYDESSSVIYLVGRGDRSLLTYEIESG--------KLQPCSPFSFNGPPIAAAAVLPKRCCNIKDVEVARLLLLTKTTIEPISFSLPRAEKLKNYFQDDIYGVVRDSVPCQTSESWFSGENRDPRVV----SLQPPGMPLLSEREIEAPV-VPKVVDFKAQKQREDEEKKTRDEQFQRLHALAYQPTLHSQRNPRGNADNDDE--------EDGWDD 897
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: A0A7S2D6J4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6J4_9STRA) HSP 1 Score: 123 bits (309), Expect = 7.470e-31 Identity = 77/197 (39.09%), Postives = 108/197 (54.82%), Query Frame = 2
Query: 128 YELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAECESRRSLCPPGMKPLSERPAPVEVSVPKAVVFRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPNRSVGVVMGVDQPTIV-DSGSEDDWSD 715
YEL G + +L C + AG+PL +A+LP Q ++ VE R+LRLT T+V+P+SF+LPR+ LK +F DDVY P RS + WL G ++ L P G+ PLSERP V KA V RQ++ + KE+K D ++ Q+A Q ++Y S G V GVD T+ D S+ +WSD
Sbjct: 2 YELGSGCR------QLTSCTDMMVAGEPLCSIAMLPKQSCDVMSVETMRVLRLTTTTVDPISFILPRADHLKQFFMDDVYVPARSRAMSQEAAGWLSGANV----APILEELKPEGVAPLSERPVEAP-KVSKAQVTRQQIAETAKEDKKNVDNFNRLQQMAVQRSKYQGLGSKGAVKGVDAATLQSDDVSDSEWSD 187
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: A0A1V9YP86_9STRA (Coronin (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YP86_9STRA) HSP 1 Score: 118 bits (295), Expect = 5.540e-26 Identity = 76/239 (31.80%), Postives = 121/239 (50.63%), Query Frame = 2
Query: 2 RDLSSPYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTS-VEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAECESRRSLCPPGMKPLSERPAPVEVSVPKAVVFRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPNRSVGVVMGVDQPTIVDSGSEDDWSD 715
R+L P T T+D+S LLP++ ++ ++ L GRG + YE+ D+ P + C G P+S A LP NIE VE+ R+L LT S ++P+SF LPR+ LK YFQDDVY + ++ P L + +W G + + +L P GM LS++P + VPK + F+ ++ +E+K+ ++ ++ LA Y P+ + D D S+ W D
Sbjct: 738 RNLLDPLVTTTIDTSGSALLPLYDASSNVMYLVGRGDRTILSYEI------DTTKPAMLPCSIFSFQGPPISSAAFLPKPMCNIEDVELNRMLLLTSGSTIDPISFYLPRAEKLKSYFQDDVYGDIPTNTPTLSAEEWFSG----ETSMPNFTTLQPEGMPKLSDKPPDAPI-VPKVIGFQARKQKELQEQKEKDERFERLHSLA-----YQPSLHANATLKQD-----DDSSDGGWDD 955
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: A0A5D6XWN9_9STRA (Coronin n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWN9_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.590e-25 Identity = 81/238 (34.03%), Postives = 129/238 (54.20%), Query Frame = 2
Query: 17 PYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAECESRRSLCPPGMKPLSERPAPVEVSVPKAVVFRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPNRSVGVVMGVDQPTIV-----DSGSEDDWSD 715
P + +T SS + P++ E++ LL L G G V+ +E+ + +A P L F + A P+SG ALLP ++ VEV RLL LTP+ V+ VSF LPR+ L+ +FQDDVY VR+++P L + +W G + SL P M PLS++P V + PK + F+ + + +E++ A++ ++ LA+Q + ++ + GV G Q +S S+DDW D
Sbjct: 809 PVTVETTASSV-VHYPLYDESSRLLFLVGLGDRHVQSFEIDAA--AAAAHPNLPFAY---AGQSPISGAALLPKALCDVRRVEVDRLLLLTPSVVDRVSFSLPRTDKLRAFFQDDVYGDVRAAQPALAAAQWFAGENA----APILESLRPNDMVPLSQKPKDVVQARPKTLEFQDRIRKEDEEKRRKAEQFERLNVLASQPSLHSVTK--GVAAGGHQSDAATAAARESDSDDDWDD 1034
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: A0A8K1CHH7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHH7_PYTOL) HSP 1 Score: 116 bits (290), Expect = 2.610e-25 Identity = 80/244 (32.79%), Postives = 127/244 (52.05%), Query Frame = 2
Query: 2 RDLSSPYSTKTVDSSNG---LLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSAL--PELHFCHEHKAAG-DPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAECESRRSLCPPGMKPLSERPAPVEVSVPKAVVFRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPNRSVGVVMGVDQPTIVDSGSEDDWSD 715
R+L P T +D +N P + E++ +L + G G + YEL D S+ + P +H A G +P+SG +LP ++ VE+ R+L L +VE VSF LPR+ L++YFQDD+Y PVR+S P L +++W G + SL PP M PLSE+P E K+ +R + E+ ++E++ A + ++ LA Q + ++ + G V D+ S+DDW D
Sbjct: 841 RNLVDPLKTTALDCANDSSTTAYPFYDESSRVLFIMGLGARHIWSYELDFKDTSEGSKSSPVVHANLPFVAQGAEPISGAVVLPKALCDVRQVEIDRVLLLRKQTVERVSFTLPRADRLREYFQDDIYGPVRASRPSLSASQWFAGEEV----VLEYDSLRPPDMVPLSEKPVETERRSSKSEYYRAKWEEEEREKQLKAAQYERLQSLAAQPSLHSKYQPQGQVRA-------DNDSDDDWDD 1073
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: UPI000644F445 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F445) HSP 1 Score: 108 bits (270), Expect = 3.770e-23 Identity = 54/148 (36.49%), Postives = 84/148 (56.76%), Query Frame = 2
Query: 2 RDLSSPYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAEC 445
R+ + P +T ++DS++GLL+P F +L LAG+G ++YYE+ S P H+ E K A P G+ +P + N+ E+AR L++TP++VEP+SF +PR D+ FQDD+Y + EP L S W G + + C
Sbjct: 249 RNFTDPLTTTSIDSASGLLMPFFDADNSILYLAGKGDGNIRYYEMV------SEAPYFHYLSEFKTAS-PQRGICFIPKRACNVSECEIARALKVTPSTVEPISFRVPRKSDI---FQDDLYPDTYAGEPVLTSQAWASGSNAEPKTC 386
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: A0A2R5GDI9_9STRA (Coronin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDI9_9STRA) HSP 1 Score: 109 bits (273), Expect = 4.420e-23 Identity = 88/260 (33.85%), Postives = 121/260 (46.54%), Query Frame = 2
Query: 17 PYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELS-------EGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTK-WLQGGSLDDAECESRRSLCPPGMKPLSER-PAPVEVSVPKAVV----FRQEMEQRQKEEKDAADKMAKMTQLANQNAEYNPN-------------RSVGVVMGVDQPTIVDSGSEDD-WSD 715
P +T V L P+ E G+++L GRG YE+ + + S+ + H C E A GDP + VAL P + ++ G E AR+LRLTP S+EPVSF +PR+ DL YF DD+Y R+ E T+ WL G + D SL G K S R P S+ +A F+Q+ + +K D +M +A Q+ YNPN RS+GV VD+ I EDD W D
Sbjct: 731 PLNTTKVGQGATALEPLLVEDNGVVILTGRGENTFHVYEIETLTRAVVKPEHCGSSPLKPHQCQEFLARGDPTTAVALAPRRVCDLGGAEWARVLRLTPNSLEPVSFTIPRASDLASYFADDIYPDARTGEAASTDTEAWLAGQNFDPV----LSSLNTSGAKTFSSRDPEEAHASLKRAQANTHRFKQQKAEEDARQKAQDDVFKRMQFMAVQHEAYNPNLSSGKAAVPQAIARSLGVA--VDEEHIDTGDVEDDEWDD 984
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: COROA_DICDI (Coronin-A n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=COROA_DICDI) HSP 1 Score: 108 bits (269), Expect = 5.030e-23 Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 2
Query: 2 RDLSSPYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLD 433
R ++P S + VDS++GLL+P + +L LAG+G ++YYEL D+S P +HF E K+A P G+ LP +CLN E+AR L++TP +VEP+SF +PR D+ FQDD+Y + EP L + +W+ G + +
Sbjct: 247 RAFTTPLSAQVVDSASGLLMPFYDADNSILYLAGKGDGNIRYYELV--DES----PYIHFLSEFKSA-TPQRGLCFLPKRCLNTSECEIARGLKVTPFTVEPISFRVPRKSDI---FQDDIYPDTYAGEPSLTAEQWVSGTNAE 380
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Match: D3B210_POLPP (Coronin n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B210_POLPP) HSP 1 Score: 104 bits (260), Expect = 8.800e-22 Identity = 52/148 (35.14%), Postives = 85/148 (57.43%), Query Frame = 2
Query: 2 RDLSSPYSTKTVDSSNGLLLPVFSEAAGLLLLAGRGGMGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVEVARLLRLTPTSVEPVSFMLPRSGDLKDYFQDDVYRPVRSSEPCLGSTKWLQGGSLDDAEC 445
R + P +T T+DS++GLL+P F +L +AG+G ++YYE+ + P ++ E K+A P G+ +P + +N+ E+AR L++TPT+VEP+SF +PR D+ FQDD+Y + EP L + W G + + C
Sbjct: 248 RTFAEPLTTVTIDSASGLLMPFFDPDNSILYMAGKGDGNIRYYEMV------NEAPYHYYLSEFKSA-TPQRGICFIPKRAVNVSECEIARALKVTPTTVEPISFRVPRKSDI---FQDDLYPDTYAGEPVLDAAAWAGGANAEPKTC 385 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13071.1850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig13071.1850.1 >prot_S-dermatodea_contig13071.1850.1 ID=prot_S-dermatodea_contig13071.1850.1|Name=mRNA_S-dermatodea_contig13071.1850.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=202bp MGVKYYELSEGDQSDSALPELHFCHEHKAAGDPLSGVALLPPQCLNIEGVback to top mRNA from alignment at S-dermatodea_contig13071:331..4499+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig13071.1850.1 ID=mRNA_S-dermatodea_contig13071.1850.1|Name=mRNA_S-dermatodea_contig13071.1850.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4169bp|location=Sequence derived from alignment at S-dermatodea_contig13071:331..4499+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig13071:331..4499+ >mRNA_S-dermatodea_contig13071.1850.1 ID=mRNA_S-dermatodea_contig13071.1850.1|Name=mRNA_S-dermatodea_contig13071.1850.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at S-dermatodea_contig13071:331..4499+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |