mRNA_S-dermatodea_contig1307.1848.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1307.1848.1
Unique NamemRNA_S-dermatodea_contig1307.1848.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1307.1848.1 vs. uniprot
Match: D8LIY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY2_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 5.910e-49
Identity = 99/177 (55.93%), Postives = 114/177 (64.41%), Query Frame = 1 
Query:    1 FWTDPCTSLAY-NIGPLLPSRNL-HMSATG-KSGTNG---------RYKSATESTTTRLQALQNF-ATVTLFPAAVL------GGLVAPGEA----GAKDAESQKWISGKGAQPKGSEDKKGTRKETKYLRCLSNCLADCQKPTSGPEKNREDCLQLCQDECCTSYEQCTYTATQNK 462
            F  + C   AY ++GPL P R   H S  G ++GT              S  E  TTRLQ LQ   A ++L PAA        GGL  P EA    G+ DA  ++WISGKGAQPKGS+DK GTRKE+KYLRCLSNCLADCQKPT GPE++RE+CLQ CQDECC SYEQCTYT TQNK
Sbjct:   18 FVQEACELFAYTSVGPLKPPRKTPHGSVAGVRTGTTSLGSSREDGPEIMSVVEPMTTRLQVLQKMGAAISLLPAAGAVAVGAGGGLAFPEEARAAKGSADATQKEWISGKGAQPKGSDDKTGTRKESKYLRCLSNCLADCQKPTYGPERDREECLQACQDECCMSYEQCTYTVTQNK 194
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BLAST of mRNA_S-dermatodea_contig1307.1848.1 vs. uniprot
Match: A0A7S2UWJ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWJ7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.840e-27
Identity = 51/89 (57.30%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:  181 AAVLGGLVAPGEAGAKDAESQKWISGKGAQPKGSEDKKGTRKETKYLRCLSNCLADCQKPTSGPEKNREDCLQLCQDECCTSYEQCTYT 447
            AA LG ++ P  + A  A+ + W+SGKG +PK S+D KGT+K+  +LRCLSNCLA CQKPTSG +++R +CL+ C+DECC +YEQCTYT
Sbjct:  120 AASLGVILPPAFSPADAADERLWLSGKGDKPKDSKDTKGTKKDINFLRCLSNCLAVCQKPTSGVQRDRSECLEDCRDECCQTYEQCTYT 208
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BLAST of mRNA_S-dermatodea_contig1307.1848.1 vs. uniprot
Match: A0A835YXU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXU0_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.850e-25
Identity = 55/101 (54.46%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:  175 FPAAVLGGLVAPGE----AGAKDAESQK-WISGKGAQPKGSEDKKGTRKETKYLRCLSNCLADCQKPTSGPEKNREDCLQLCQDECCTSYEQCTYTATQNK 462
             P A   G +A GE    A A+ AE ++ W+SGK   PK ++DK GT+K++KYLRCLSNCLA CQKP+   E++R++CLQ CQD CC SY QCTY   QNK
Sbjct:   28 LPVAAAAG-IALGEPALAAAAETAEGKRLWLSGKSGGPK-TDDKAGTKKDSKYLRCLSNCLAGCQKPSYDGERDRDECLQRCQDSCCFSYVQCTYPVVQNK 126
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BLAST of mRNA_S-dermatodea_contig1307.1848.1 vs. uniprot
Match: W7U4A4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4A4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.810e-22
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:  241 QKWISGKGAQPKGSEDKKGTRKETKYLRCLSNCLADCQKPTSGPEKNREDCLQLCQDECCTSYEQCTYT 447
            ++WISGK  +P+GS+D+ GT++++ YLRCLS+C  +C+KP  GP K+  +CL+ CQD CC +YEQCTYT
Sbjct:  163 RRWISGKSEKPRGSKDRTGTKRDSNYLRCLSDCTTECRKPGQGPSKDNAECLEACQDYCCKTYEQCTYT 231
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BLAST of mRNA_S-dermatodea_contig1307.1848.1 vs. uniprot
Match: A0A7S2H145_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H145_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.970e-20
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:  238 SQKWISGKGAQPKGSEDKKGTRKETKYLRCLSNCLADCQK-PTSGPEKNREDCLQLCQDECCTSYEQCTYTATQN 459
            S+ WISGK  +PK S+DK GT+K+TK+LRCLSNC++DCQ+   +G   +R+ C   CQD+CC +YEQCT T   N
Sbjct:   68 SKLWISGKSEKPKDSKDKTGTKKDTKFLRCLSNCVSDCQQLGATGKMTDRDTCYAQCQDDCCETYEQCTCTLNPN 142
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BLAST of mRNA_S-dermatodea_contig1307.1848.1 vs. uniprot
Match: A0A8J5X4I7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X4I7_DIALT)

HSP 1 Score: 82.0 bits (201), Expect = 4.360e-17
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:  223 AKDAESQKWISGK--GAQPKGSEDKKGTRKETKYLRCLSNCLADCQKPTSGPEKNREDCLQLCQDECCTSYEQCTYTATQ 456
            A+   +Q+WISG+  G +PK   D  GT+++ KYLRCL+NCL  C    SG +K++  CLQ CQDECC++Y QC+Y A +
Sbjct:   55 ARSPAAQQWISGRNPGGKPKDG-DVTGTKRDPKYLRCLNNCLPSCIGGPSGVQKDKSTCLQECQDECCSTYAQCSYAAVK 133
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BLAST of mRNA_S-dermatodea_contig1307.1848.1 vs. uniprot
Match: A0A0G4ECE9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ECE9_VITBC)

HSP 1 Score: 80.5 bits (197), Expect = 2.750e-16
Identity = 35/74 (47.30%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:  229 DAESQKWISGKGAQPKGS-EDKKGTRKETKYLRCLSNCLADCQKPTS-GPEKNREDCLQLCQDECCTSYEQCTY 444
            + E + WISGK  +PK   + ++GT+++ K+L+CLS CL++C+KP S G  K+ ++CL+ C+DECC +YEQC+Y
Sbjct:   78 EGEKRLWISGKSTEPKKDPKAREGTKRDPKFLKCLSQCLSECKKPGSYGYSKSEDECLEDCRDECCFTYEQCSY 151
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BLAST of mRNA_S-dermatodea_contig1307.1848.1 vs. uniprot
Match: A0A7S0PYZ7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYZ7_9EUKA)

HSP 1 Score: 80.1 bits (196), Expect = 3.780e-16
Identity = 48/106 (45.28%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:  151 QNFATVTLFPAAVLGGLVAPGEAGAKDAESQKWISGKGAQP--KGSEDKK-GTRKETKYLRCLSNCLADCQ-KPTSGPEKNREDCLQLCQDECCTSYEQCTYTATQ 456
            ++FAT+     A   G V      A+D     W+SGK + P  K S+DK  GT+K+ KYL CL++C+  CQ  PTSG +K R DC + CQDECC +Y+QCTY   Q
Sbjct:   54 RHFATLAAAALASTAGAVV-----AEDVPQLLWLSGK-SDPIRKTSKDKPDGTKKDPKYLSCLNDCVPRCQGPPTSGNQKERADCFEECQDECCATYQQCTYKIRQ 153
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BLAST of mRNA_S-dermatodea_contig1307.1848.1 vs. uniprot
Match: A0A8J2WIU1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WIU1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.440e-16
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1 
Query:  247 WISGKGAQ-PKGSEDKKGTRKETKYLRCLSNCLADCQKPTSGPEKNREDCLQLCQDECCTSYEQCTYT 447
            ++SGK    P+   D KGT+K+  YL+CL+ C A C+K  SG +  R +CL LC+DECC +YEQCTYT
Sbjct:   47 YVSGKNPDGPREKGDTKGTKKDGSYLQCLAGCAARCEKAKSGRQLTRGECLNLCRDECCVTYEQCTYT 114
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BLAST of mRNA_S-dermatodea_contig1307.1848.1 vs. uniprot
Match: A0A7S0JB69_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JB69_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 1.700e-13
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:  196 GLVAPGEAGAKDAESQKWISGKGAQP--KGSEDKK-GTRKETKYLRCLSNCLADCQKPTSGPEKNREDCLQLCQDECCTSYEQCTYTATQ 456
            G+ A   A A +     W+SGK + P  K S+DK  GT+++ K+L CL++C+  CQ P    +K+R DC + CQDECC +Y+QCTY   Q
Sbjct:   63 GIAAQRSAAAAEDAPLLWLSGK-SDPIRKTSKDKPDGTKRDPKFLSCLNDCVPRCQGPPGMNQKDRADCFEECQDECCFTYQQCTYKIRQ 151
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1307.1848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LIY2_ECTSI5.910e-4955.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UWJ7_9STRA1.840e-2757.30Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YXU0_9STRA1.850e-2554.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U4A4_9STRA1.810e-2255.07Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2H145_9STRA1.970e-2054.67Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J5X4I7_DIALT4.360e-1748.75Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0G4ECE9_VITBC2.750e-1647.30Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S0PYZ7_9EUKA3.780e-1645.28Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A8J2WIU1_9STRA4.440e-1651.47Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0JB69_9EUKA1.700e-1343.33Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1307contigS-dermatodea_contig1307:17974..19535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue6.2e-39
Seed eggNOG ortholog2880.D8LIY2
EggNOG OGs2E8UA@1,2SF9D@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size465
Cds size465
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1307.1848.1prot_S-dermatodea_contig1307.1848.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1307 17974..19535 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924272.73469-CDS-S-dermatodea_contig1307:17973..181531622924272.73469-CDS-S-dermatodea_contig1307:17973..18153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1307 17974..18153 -
1694079141.4793246-CDS-S-dermatodea_contig1307:17973..181531694079141.4793246-CDS-S-dermatodea_contig1307:17973..18153Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1307 17974..18153 -
1622924272.74912-CDS-S-dermatodea_contig1307:18730..187721622924272.74912-CDS-S-dermatodea_contig1307:18730..18772Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1307 18731..18772 -
1694079141.4937372-CDS-S-dermatodea_contig1307:18730..187721694079141.4937372-CDS-S-dermatodea_contig1307:18730..18772Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1307 18731..18772 -
1622924272.7635741-CDS-S-dermatodea_contig1307:19292..195351622924272.7635741-CDS-S-dermatodea_contig1307:19292..19535Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1307 19293..19535 -
1694079141.512318-CDS-S-dermatodea_contig1307:19292..195351694079141.512318-CDS-S-dermatodea_contig1307:19292..19535Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1307 19293..19535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1307.1848.1

>prot_S-dermatodea_contig1307.1848.1 ID=prot_S-dermatodea_contig1307.1848.1|Name=mRNA_S-dermatodea_contig1307.1848.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=155bp
FWTDPCTSLAYNIGPLLPSRNLHMSATGKSGTNGRYKSATESTTTRLQAL
QNFATVTLFPAAVLGGLVAPGEAGAKDAESQKWISGKGAQPKGSEDKKGT
RKETKYLRCLSNCLADCQKPTSGPEKNREDCLQLCQDECCTSYEQCTYTA
TQNK*
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mRNA from alignment at S-dermatodea_contig1307:17974..19535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1307.1848.1 ID=mRNA_S-dermatodea_contig1307.1848.1|Name=mRNA_S-dermatodea_contig1307.1848.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1562bp|location=Sequence derived from alignment at S-dermatodea_contig1307:17974..19535- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTGGACAGATCCATGTACTTCGCTAGCATACAACATCGGGCCGTTGCT
ACCATCACGAAACCTGCACATGTCAGCAACGGGGAAATCGGGCACAAATG
GGAGATACAAATCGGCGACAGAATCGACCACGACACGGCTGCAGGCGTTG
CAGAATTTTGCGACCGTCACGTTGTTTCCTGCCGCTGTTTTAGGGGGTTT
AGTCGCCCCGGGGGAGGCGGGAGCAAAGGACGCAGAGTCACAGGTGCGCT
ACTTGGAGACGCCGTCAGTAAGAGCATTCTTGGGGTACGTAGGAGTCAGT
CGGCTTCTATAATATGATACAGTTACTATTCGGATGACGGCCTAGAAATT
CGGCGAGTTCCGAACCACAATAGAGCGGTTTCGGTATCCGGTCTCACATG
ACACGTATTTTGTGAGGGGGCTGGCGGCTGGCGGTTGTTTTCTTGACGAG
TGGCTGCAATAGCGCAGAGCAGCTAGGTGGCGCTATTGAATTGAACGCTT
ACTTTTGGCCTACCTTCATGGCCCCGTGAAAACTTGAAATATCCAATTTG
GTGGTGGTTGCGGTTTGAGCTGCAAAGTAGATGGCAGACTTCCCAAGCGC
ATGCAGTTTTGACTTCCATTCTTGCCCGAGGCACCAATCCATGCACTCTA
ATTTCGCTTCGCAACTCTACCGGATTTTATTACGGTAACCGTAACGTTGT
AGAGCGGTGCCCTGATTCCCCTGCATTCTGCTCTTCGTGTCTCGCTCCGT
TCACTAGGGCAAGAAGTGGATTTCGGGGAAAGGGGCCCAACCCAAGGGAT
CAGAAGTGAGTTTGAGACTGCCAAGGAGAGAGTGTTCGTTGTGTCGCTTA
CTTGTATCAAAATACTCGGCGAAATACAGAGCCCACTTATTAAATAAACG
GCCGGCGCTCGTTTGTTTCCAGAAGGCACCAGAAGACCAGAAGCAAAGGC
GTATTCCTTCGAATTTTTAGGCCAACAGCTAGGTGCTGTCAACAGTTCGT
GCAATGATGGTTTTATAAATCGTAGGGCATCACACCAAACAAACGACAGT
GTAGGGGCAAGGCTGCATCGATCGAGTGTCGACGAGGCCGGATATCTCTG
TCGACTTTCTGAGCACATTTCGATGAAGCCCCCCTCCTGAACCCGGCGTG
CATGCATATAACACGGACACACCGATTGGAATCACTATGTGATATGGGCA
AAGGCAGAAGAAACGGGTGGGAAACGATTTCAAAACAAATCGGACGTGCA
CATGCCTTGAAACGCAGCCCAAACCTACAATTGCATTTATTTGTTATATA
CGATATTTCACCACCGCACCGAAGTTCAACTTCCGCCCGTCCCTCTTGCC
ATGTTTGTGCGCCCACGCAAAACGCATGACAGGACAAGAAAGGAACTCGA
AAGGAAACCAAGTACTTGCGGTGCCTGAGCAACTGCTTGGCAGACTGCCA
GAAACCCACGTCCGGCCCTGAGAAGAATAGAGAGGATTGTCTCCAGCTCT
GCCAGGACGAATGCTGCACCTCGTACGAGCAGTGCACCTACACTGCCACG
CAAAATAAGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1307:17974..19535-

>mRNA_S-dermatodea_contig1307.1848.1 ID=mRNA_S-dermatodea_contig1307.1848.1|Name=mRNA_S-dermatodea_contig1307.1848.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at S-dermatodea_contig1307:17974..19535- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTGGACAGATCCATGTACTTCGCTAGCATACAACATCGGGCCGTTGCT
ACCATCACGAAACCTGCACATGTCAGCAACGGGGAAATCGGGCACAAATG
GGAGATACAAATCGGCGACAGAATCGACCACGACACGGCTGCAGGCGTTG
CAGAATTTTGCGACCGTCACGTTGTTTCCTGCCGCTGTTTTAGGGGGTTT
AGTCGCCCCGGGGGAGGCGGGAGCAAAGGACGCAGAGTCACAGTTTTGGA
CAGATCCATGTACTTCGCTAGCATACAACATCGGGCCGTTGCTACCATCA
CGAAACCTGCACATGTCAGCAACGGGGAAATCGGGCACAAATGGGAGATA
CAAATCGGCGACAGAATCGACCACGACACGGCTGCAGGCGTTGCAGAATT
TTGCGACCGTCACGTTGTTTCCTGCCGCTGTTTTAGGGGGTTTAGTCGCC
CCGGGGGAGGCGGGAGCAAAGGACGCAGAGTCACAGAAGTGGATTTCGGG
GAAAGGGGCCCAACCCAAGGGATCAGAAAAGTGGATTTCGGGGAAAGGGG
CCCAACCCAAGGGATCAGAAGACAAGAAAGGAACTCGAAAGGAAACCAAG
TACTTGCGGTGCCTGAGCAACTGCTTGGCAGACTGCCAGAAACCCACGTC
CGGCCCTGAGAAGAATAGAGAGGATTGTCTCCAGCTCTGCCAGGACGAAT
GCTGCACCTCGTACGAGCAGTGCACCTACACTGCCACGCAAAATAAGTGA
GACAAGAAAGGAACTCGAAAGGAAACCAAGTACTTGCGGTGCCTGAGCAA
CTGCTTGGCAGACTGCCAGAAACCCACGTCCGGCCCTGAGAAGAATAGAG
AGGATTGTCTCCAGCTCTGCCAGGACGAATGCTGCACCTCGTACGAGCAG
TGCACCTACACTGCCACGCAAAATAAGTGA
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