mRNA_S-dermatodea_contig13068.1845.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13068.1845.1
Unique NamemRNA_S-dermatodea_contig13068.1845.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13068.1845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13068contigS-dermatodea_contig13068:2599..3052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size455
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924272.392844-UTR-S-dermatodea_contig13068:2598..26891622924272.392844-UTR-S-dermatodea_contig13068:2598..2689Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13068 2599..2689 +
1694079141.1846597-UTR-S-dermatodea_contig13068:2598..26891694079141.1846597-UTR-S-dermatodea_contig13068:2598..2689Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13068 2599..2689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924272.402025-CDS-S-dermatodea_contig13068:2689..30521622924272.402025-CDS-S-dermatodea_contig13068:2689..3052Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13068 2690..3052 +
1694079141.1939478-CDS-S-dermatodea_contig13068:2689..30521694079141.1939478-CDS-S-dermatodea_contig13068:2689..3052Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13068 2690..3052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13068.1845.1prot_S-dermatodea_contig13068.1845.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13068 2690..3052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13068.1845.1

>prot_S-dermatodea_contig13068.1845.1 ID=prot_S-dermatodea_contig13068.1845.1|Name=mRNA_S-dermatodea_contig13068.1845.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
MITTPDPGAGRLGVFGVHAQCRTMHQQLAMRQGRNIPGGPHRMGSNTRPE
VSNRRPGVHHLLSPDVFLMRQPVSGTIIPRVSGMIRPGWSHTPRLGVHGT
LHVVSGRTAPPPVGLDHSLSL
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mRNA from alignment at S-dermatodea_contig13068:2599..3052+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13068.1845.1 ID=mRNA_S-dermatodea_contig13068.1845.1|Name=mRNA_S-dermatodea_contig13068.1845.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=454bp|location=Sequence derived from alignment at S-dermatodea_contig13068:2599..3052+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGCCTCGAACGATGCCCGTGTCGGCCGCCGTCGCCACTGGTGCCGCCG
CCACCTCCCATTAATACCGCCCCGTGTCTACGCATTGCGTGATGATCACT
ACCCCTGACCCGGGGGCTGGCCGGCTCGGGGTATTCGGGGTTCACGCACA
ATGTCGGACAATGCATCAGCAATTGGCCATGCGCCAAGGGCGGAACATCC
CCGGTGGGCCCCATAGGATGGGGTCCAATACAAGGCCCGAAGTGTCCAAT
AGGAGGCCTGGGGTACACCATTTGTTGAGCCCCGACGTATTCCTGATGAG
GCAACCAGTTTCCGGCACGATAATTCCCCGAGTTTCCGGTATGATCAGGC
CCGGATGGTCCCACACACCAAGGCTCGGAGTACACGGGACCCTGCACGTG
GTATCCGGAAGGACGGCGCCACCACCAGTTGGGCTGGATCATTCCTTGTC
CTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13068:2599..3052+

>mRNA_S-dermatodea_contig13068.1845.1 ID=mRNA_S-dermatodea_contig13068.1845.1|Name=mRNA_S-dermatodea_contig13068.1845.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig13068:2599..3052+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCACTACCCCTGACCCGGGGGCTGGCCGGCTCGGGGTATTCGGGGT
TCACGCACAATGTCGGACAATGCATCAGCAATTGGCCATGCGCCAAGGGC
GGAACATCCCCGGTGGGCCCCATAGGATGGGGTCCAATACAAGGCCCGAA
GTGTCCAATAGGAGGCCTGGGGTACACCATTTGTTGAGCCCCGACGTATT
CCTGATGAGGCAACCAGTTTCCGGCACGATAATTCCCCGAGTTTCCGGTA
TGATCAGGCCCGGATGGTCCCACACACCAAGGCTCGGAGTACACGGGACC
CTGCACGTGGTATCCGGAAGGACGGCGCCACCACCAGTTGGGCTGGATCA
TTCCTTGTCCTTGATGATCACTACCCCTGACCCGGGGGCTGGCCGGCTCG
GGGTATTCGGGGTTCACGCACAATGTCGGACAATGCATCAGCAATTGGCC
ATGCGCCAAGGGCGGAACATCCCCGGTGGGCCCCATAGGATGGGGTCCAA
TACAAGGCCCGAAGTGTCCAATAGGAGGCCTGGGGTACACCATTTGTTGA
GCCCCGACGTATTCCTGATGAGGCAACCAGTTTCCGGCACGATAATTCCC
CGAGTTTCCGGTATGATCAGGCCCGGATGGTCCCACACACCAAGGCTCGG
AGTACACGGGACCCTGCACGTGGTATCCGGAAGGACGGCGCCACCACCAG
TTGGGCTGGATCATTCCTTGTCCTTG
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