mRNA_S-dermatodea_contig13020.1828.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13020.1828.1
Unique NamemRNA_S-dermatodea_contig13020.1828.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13020.1828.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.430e-7
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 3 
Query:  234 NPKKRIHLRNGCATIDGSAAATSEARNSAHYARPGHLLV 350
            +P+ ++HLRNG AT DG+AA  SEAR   HYARPGH  V
Sbjct:  769 DPQAQVHLRNGSATSDGTAAQASEARKRQHYARPGHAFV 807
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BLAST of mRNA_S-dermatodea_contig13020.1828.1 vs. uniprot
Match: A0A6H5L8G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G2_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.360e-7
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 3 
Query:  234 NPKKRIHLRNGCATIDGSAAATSEARNSAHYARPGHL 344
            +P+ ++HLRNG AT DG+AA  SEAR   HYARPGH+
Sbjct:   31 DPQAQVHLRNGGATSDGTAAQASEARKRQHYARPGHV 67
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BLAST of mRNA_S-dermatodea_contig13020.1828.1 vs. uniprot
Match: A0A6H5JTC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC7_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.170e-6
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 3 
Query:  234 NPKKRIHLRNGCATIDGSAAATSEARNSAHYARPGHL 344
            +P+ ++HLRNG AT DG+AA  SEAR   HYARPGH+
Sbjct:  726 DPQAQVHLRNGSATSDGTAAQASEARKRQHYARPGHV 762
[Close]
BLAST of mRNA_S-dermatodea_contig13020.1828.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.240e-6
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 3 
Query:  234 NPKKRIHLRNGCATIDGSAAATSEARNSAHYARPGHL 344
            +P+ ++HLRNG AT DG+AA  SEAR   HYARPGH+
Sbjct: 2040 DPQAQVHLRNGSATSDGTAAQASEARKRQHYARPGHV 2076
[Close]
BLAST of mRNA_S-dermatodea_contig13020.1828.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.130e-6
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 3 
Query:  234 NPKKRIHLRNGCATIDGSAAATSEARNSAHYARPGHL 344
            +P  ++HLRNG AT DG+AA  SEAR   HYARPGH+
Sbjct:  571 DPHAQVHLRNGSATSDGTAAQASEARKRQHYARPGHV 607
[Close]
BLAST of mRNA_S-dermatodea_contig13020.1828.1 vs. uniprot
Match: A0A6H5JKF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF1_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 5.770e-6
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 3 
Query:  234 NPKKRIHLRNGCATIDGSAAATSEARNSAHYARPGHL 344
            +P+ ++H+RNG AT DG+AA  SE+R   HYARPGH+
Sbjct:  142 DPQAQVHVRNGSATSDGTAAPASESRKRQHYARPGHV 178
[Close]
BLAST of mRNA_S-dermatodea_contig13020.1828.1 vs. uniprot
Match: A0A6H5JBE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.590e-6
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 3 
Query:  234 NPKKRIHLRNGCATIDGSAAATSEARNSAHYARPG 338
            +P+ ++HLRNG AT DG+AA  SEAR   HYARPG
Sbjct:   31 DPQAQVHLRNGSATSDGTAAQASEARKRQHYARPG 65
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13020.1828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JLG6_9PHAE3.430e-761.54Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L8G2_9PHAE6.360e-762.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC7_9PHAE1.170e-662.16Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JH58_9PHAE1.240e-662.16Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHZ7_9PHAE2.130e-662.16Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JKF1_9PHAE5.770e-656.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE0_9PHAE8.590e-662.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13020contigS-dermatodea_contig13020:3494..6601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13020.1828.1prot_S-dermatodea_contig13020.1828.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13020 3559..6555 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924271.332022-UTR-S-dermatodea_contig13020:3493..35581622924271.332022-UTR-S-dermatodea_contig13020:3493..3558Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13020 3494..3558 -
1694079140.4938993-UTR-S-dermatodea_contig13020:3493..35581694079140.4938993-UTR-S-dermatodea_contig13020:3493..3558Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13020 3494..3558 -
1622924271.3615892-UTR-S-dermatodea_contig13020:6555..66011622924271.3615892-UTR-S-dermatodea_contig13020:6555..6601Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13020 6556..6601 -
1694079140.5174053-UTR-S-dermatodea_contig13020:6555..66011694079140.5174053-UTR-S-dermatodea_contig13020:6555..6601Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13020 6556..6601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924271.3412857-CDS-S-dermatodea_contig13020:3558..38051622924271.3412857-CDS-S-dermatodea_contig13020:3558..3805Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13020 3559..3805 -
1694079140.501809-CDS-S-dermatodea_contig13020:3558..38051694079140.501809-CDS-S-dermatodea_contig13020:3558..3805Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13020 3559..3805 -
1622924271.3523903-CDS-S-dermatodea_contig13020:6535..65551622924271.3523903-CDS-S-dermatodea_contig13020:6535..6555Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13020 6536..6555 -
1694079140.5095809-CDS-S-dermatodea_contig13020:6535..65551694079140.5095809-CDS-S-dermatodea_contig13020:6535..6555Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13020 6536..6555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13020.1828.1

>prot_S-dermatodea_contig13020.1828.1 ID=prot_S-dermatodea_contig13020.1828.1|Name=mRNA_S-dermatodea_contig13020.1828.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
MHDIHNCCTYNMGLRMARPSRSRETTGWTSSPSRRDSFQMPKKLVINTIC
QAALLLVEVMFAEPQEADSPPERVRHHRRLSSRHLRGA*
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mRNA from alignment at S-dermatodea_contig13020:3494..6601-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13020.1828.1 ID=mRNA_S-dermatodea_contig13020.1828.1|Name=mRNA_S-dermatodea_contig13020.1828.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3108bp|location=Sequence derived from alignment at S-dermatodea_contig13020:3494..6601- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGTGTCCCCTTCGAGTACACCTTCAGCCCCGAATTCACAGCGGTATGC
ATGACATCCACAACTGGTACGCGGTATGTTCAGTGTGTAACAATCAAATC
GAACTCACAGGCGAGCTGTCTTTAGCGTAATATTAGGGATCCCGAACGAC
CGGCGCACTGCTTACTATTAGACCAGCGTGATCCCAGACGAAGTATCAAA
ACCTGTAACATTACTGTTGAACGGGAGGGGGCATGGGGCAAGAAAGGGGT
GAACTGACTCCAAATTCGAAGGCACACATGCTCACGATGCCAAGGCACAC
AGCTGACGACAGTCACTTCACTATCCTAAGCGCGAGCGTCTAGCGATACT
TATACAAATCTTTTAATTGTATATTTGTATGACATTATGATAATATGTTT
ATGGGCAGCAGATAGCTTAGTTAGGTGTATCGCGCTGCTGGCTATATTTG
GCCGGAAGGACCTGCTATAAGCGCTTCAGGTTGGGCTTTTGCACGCACAG
CAGACTTATATAGGGCAGCATTGTCGTGGTGGGATATGCTTTGACATCTC
ATGATGGATGCTGCTGTATTTCTGTGTCATTATATGGCGGTGCGAACAGC
ACTTCAGACAGTAAGTTTCTGTAGCATGGCATTACCTACCTATTGTGTGA
TGTAGTAGAGTGATGACAGGCAGCACGTCAGACATAAATGGTGCAGCTCG
TGCTTGTATCGTAGCACATAATTATGATAGTTTCCGGTACATCAGGGGGT
CAGGCGCTCTGCCGGGCGGCGTGCGGGTTAGTACATCTCTGTCATGTCTG
GCCATCAGGTTTTTGTTCGGTGTAGGGGTGCTGGATTTCAATTGCTCTTG
TGCCTGCATGTGACCACGAGCGGGATCAGCATGCAATTTTGCAATTACAG
AAATGGCGGGCCGGTCGGTTGCATGTGTGACAATCCATAAAAAAAAAAAT
CAAATCAAAGTGTGGTGGGTGTGCGGGGCGGGGGCGGGGGTGAGAGCCAG
CATCAGTGCCTATACAGCACTTGCCGCTCTTTTTGCTATTACTGAGGTAG
ACAGAGTAGTTACTGTATGTAGTAATCGGGACCAAATTCCTGCTGATTAT
CATAGCGTGTTCAAGTCTTGTTTTTTTAAACGTTGGCCCGATTACCTTGC
ATTTTTTTTTGTTGGTACCCGGTCTGGTTAACGCTCCCGGTTCCCCGATT
TTCACGCACGTCCCGTTGGGCCACGTCATGACCTGACCTTGAAGTATATG
ATGTGCCGCGTTGTGTCACACCTCGAGTGGGCGCCCCCCCTGGACCAGTC
TGTCCTATTAACTCTTTTGGGACAAAGGCTGTTTTCGGGTAACTGTTTGC
TTTTATTATTTACCCTTTTGGGACTAAGCTTTGGGGACTAAGTAAGGCTG
TTTTCGGGTAACTGTTTGCTATCAGTAGTTGCAAAAAGTTACCCGAAAAC
AGCCTTGCTTAGTCCCAAAGCTAGAGGGTAAATATTAAAAGCAAACAGTT
ACCCGAAAACAGCATTAGTCCCAAAAGGGTTAATAGAGCCCAATCAAGTA
CCTCCCACTACGTGTACCCCTCCGGGATCTACTAATAATATCATACCACT
CTCGAACTCTCGCCACCACTGCTTCCGATCAGGGACCCACAATTTGACAT
ATGTATATTTCTGATCGGGTATCATACAAATATGCGTTTCTAAATCAACC
AATCAATCAATCAATCAAACATTAAACGTTTTACTTGTAGCTCTACGCTG
TTTTTGCCGAATGTGTTGTTACTGGTATATACTATCTTGTCAGCTCTATC
TTGTACTACAGTAGTACCTGGTACTTCTTTTCTCATATCACCACGAGCGG
GATCGGCAACCATTGGTGGGCTGGTCCGCGGTTGTATATATGTGTGGCAA
TAATAAAATATAAAAATATAGCGCTGGCTTGATGAGGACTGATTCATTCA
TCTCCGTGCGACCCGCTCTAAGCTCAGCCAACGAAACACAGCTAGCTCGA
GATGTTTCATGCCAGCACAATTTCAACCAACTCGTGGGAGAAACGAGAGA
TAACATCATCCTAATCACAGACAGCTCTTTCGATCACAGCGTGGGCGTGC
TGGGGGGGGGGGGGGGGGGAGCTGTTGGTTGTACTGAGCAGTCATTCCAC
AACAACAATCAGACAAAGGTAGTGTGGGTGTACTATATGTACAACTCGTC
AGAGAGTCGAACAGAAGGGCTCAATCAAGAAAAACCAATACAATACAATT
ATTATGTGGTAGGAAAGGAACACATCATATTATTGGCTCTTAAAAACGCT
GCAAATATACATACATCACCAGGATATACCTCAGGACGAAGGCCCCTGTC
CTGTATGATACCATAGCCATATGACACCATACATGATAAGACACTATATC
ATCATATGTAACAAGTGAGCCTCCATAGGTGTAGCTTGAAAGGACCATCT
TCCCTCTTGAAAAGGTGGGACCCGGACCCCAACGCTCGCTCTATGTTTCT
GAATTCTATATTATTTTCAGGGCGGGGTATGGCCTTTTGGATTTTATAAA
GTAAAGGTGCCTGAGGGCCCGGCCGGTAGATCATGCTCGCACAATCCCCC
CGGGGGAGTAAGTCCACATGGGCCAGAGATTCCTAGGCATTGAACCGTAA
CTTACATGGCGCCTTCCTGCCCCTGCTGCGGTGCGGTGGATTGCGGACTC
CCGTCACGCCCGCATCCGCCCGAGGTCAGATGCCCAAGTAAACCAGTACC
AACCCCTCGTCCATGCCCTGTCGCGGACACTTATTAAATTAAACAGCTGC
ACATACAACATGGGGCTGAGGATGGCGCGCCCTTCACGATCGCGCGAGAC
TACCGGATGGACATCATCACCATCCCGGCGGGACAGCTTCCAGATGCCGA
AGAAGCTAGTTATCAACACAATTTGTCAAGCGGCTCTTCTACTGGTGGAA
GTAATGTTTGCCGAACCCCAAGAAGCGGATTCACCTCCGGAACGGGTGCG
CCACCATCGACGGCTCAGCAGCCGCCACCTCCGAGGCGCGTAATAGCGCA
CACTATGCTCGCCCGGGACATTTACTCGTGCTTTGATGAGCGTAACTTTA
AACTAGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13020:3494..6601-

>mRNA_S-dermatodea_contig13020.1828.1 ID=mRNA_S-dermatodea_contig13020.1828.1|Name=mRNA_S-dermatodea_contig13020.1828.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig13020:3494..6601- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCATGACATCCACAACTGATGCATGACATCCACAACTGCTGCACATAC
AACATGGGGCTGAGGATGGCGCGCCCTTCACGATCGCGCGAGACTACCGG
ATGGACATCATCACCATCCCGGCGGGACAGCTTCCAGATGCCGAAGAAGC
TAGTTATCAACACAATTTGTCAAGCGGCTCTTCTACTGGTGGAAGTAATG
TTTGCCGAACCCCAAGAAGCGGATTCACCTCCGGAACGGGTGCGCCACCA
TCGACGGCTCAGCAGCCGCCACCTCCGAGGCGCGTAACTGCACATACAAC
ATGGGGCTGAGGATGGCGCGCCCTTCACGATCGCGCGAGACTACCGGATG
GACATCATCACCATCCCGGCGGGACAGCTTCCAGATGCCGAAGAAGCTAG
TTATCAACACAATTTGTCAAGCGGCTCTTCTACTGGTGGAAGTAATGTTT
GCCGAACCCCAAGAAGCGGATTCACCTCCGGAACGGGTGCGCCACCATCG
ACGGCTCAGCAGCCGCCACCTCCGAGGCGCGTAA
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