mRNA_S-dermatodea_contig12988.1812.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12988.1812.1
Unique NamemRNA_S-dermatodea_contig12988.1812.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12988.1812.1 vs. uniprot
Match: D8LTR5_ECTSI (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR5_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 8.520e-8
Identity = 61/144 (42.36%), Postives = 76/144 (52.78%), Query Frame = 1 
Query:   58 AGKSTALSVSLGRAAFTIDP--GYIEVLPDGDLFVTLQDKPEXXXXXXXCNRSATLSPWTGSA------VASPRAALSTKTGGSNGSGVHHGSSTPGKSLKSRML--GKGGGGSSFASG------TRPAQGGVIIKMDFVRIEH 441
            AG +  +   LG     ++     IE LP G+L+V+L+DK E        +R   LSP TGS         SPR  LS+K G SNG+     SS   KS  + ML  GK GG S  + G      +RPAQGGV+IKMDFVRIEH
Sbjct:  597 AGAAARVENLLGEPKRVVEAMSASIEELPGGELYVSLEDKKEANTG----DRFGGLSPLTGSGSVVSSRATSPRPVLSSKMG-SNGNATGGLSS---KSFNNMMLKLGKSGGTSXXSGGNLGHSQSRPAQGGVVIKMDFVRIEH 732
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BLAST of mRNA_S-dermatodea_contig12988.1812.1 vs. uniprot
Match: A0A6H5L6N3_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.300e-6
Identity = 59/147 (40.14%), Postives = 75/147 (51.02%), Query Frame = 1 
Query:   49 VDSAGKSTALSVSLGRAAFTIDP--GYIEVLPDGDLFVTLQDKPEXXXXXXXCNRSATLSPWTGSA------VASPRAALSTKTGGSNGSGVHHGSSTPGKSLKSRML--GKGGGGSSFASG------TRPAQGGVIIKMDFVRIEH 441
            V  +G +  +   LG     ++     I+ LP G+L+V+L+DK E        +R   LSP TGS         SPR  LS K G SNG+     SS   KS  + ML   K GG S  + G      +RPAQGGV+IKMDFVRIEH
Sbjct:  620 VSGSGAAARVENLLGEPKGVVEATSASIKQLPGGELYVSLEDKKEKDAST--ADRFGGLSPLTGSGSMASSRANSPRPVLSNKMG-SNGNATGGLSS---KSFNNMMLKLSKSGGTSGGSGGNLGHSQSRPAQGGVVIKMDFVRIEH 760
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12988.1812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTR5_ECTSI8.520e-842.36Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L6N3_9PHAE2.300e-640.14Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12988contigS-dermatodea_contig12988:477..6222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue4.4e-10
Seed eggNOG ortholog2880.D8LTR5
KEGG koko:K12486
KEGG Pathwayko04144,map04144
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0703@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size3533
Cds size444
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12988.1812.1prot_S-dermatodea_contig12988.1812.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12988 3565..6222 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924270.1038194-UTR-S-dermatodea_contig12988:476..35641622924270.1038194-UTR-S-dermatodea_contig12988:476..3564Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12988 477..3564 -
1694079139.5980618-UTR-S-dermatodea_contig12988:476..35641694079139.5980618-UTR-S-dermatodea_contig12988:476..3564Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12988 477..3564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924270.116863-CDS-S-dermatodea_contig12988:3564..37051622924270.116863-CDS-S-dermatodea_contig12988:3564..3705Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12988 3565..3705 -
1694079139.6069722-CDS-S-dermatodea_contig12988:3564..37051694079139.6069722-CDS-S-dermatodea_contig12988:3564..3705Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12988 3565..3705 -
1622924270.1249406-CDS-S-dermatodea_contig12988:4373..44701622924270.1249406-CDS-S-dermatodea_contig12988:4373..4470Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12988 4374..4470 -
1694079139.6148481-CDS-S-dermatodea_contig12988:4373..44701694079139.6148481-CDS-S-dermatodea_contig12988:4373..4470Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12988 4374..4470 -
1622924270.1328876-CDS-S-dermatodea_contig12988:5707..58451622924270.1328876-CDS-S-dermatodea_contig12988:5707..5845Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12988 5708..5845 -
1694079139.6246507-CDS-S-dermatodea_contig12988:5707..58451694079139.6246507-CDS-S-dermatodea_contig12988:5707..5845Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12988 5708..5845 -
1622924270.1456416-CDS-S-dermatodea_contig12988:6154..62221622924270.1456416-CDS-S-dermatodea_contig12988:6154..6222Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12988 6155..6222 -
1694079139.6340497-CDS-S-dermatodea_contig12988:6154..62221694079139.6340497-CDS-S-dermatodea_contig12988:6154..6222Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12988 6155..6222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12988.1812.1

>prot_S-dermatodea_contig12988.1812.1 ID=prot_S-dermatodea_contig12988.1812.1|Name=mRNA_S-dermatodea_contig12988.1812.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=148bp
PPTVPRGGGEDGGVFCVDSAGKSTALSVSLGRAAFTIDPGYIEVLPDGDL
FVTLQDKPEDKPEDKSCNRSATLSPWTGSAVASPRAALSTKTGGSNGSGV
HHGSSTPGKSLKSRMLGKGGGGSSFASGTRPAQGGVIIKMDFVRIEH*
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mRNA from alignment at S-dermatodea_contig12988:477..6222-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12988.1812.1 ID=mRNA_S-dermatodea_contig12988.1812.1|Name=mRNA_S-dermatodea_contig12988.1812.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5746bp|location=Sequence derived from alignment at S-dermatodea_contig12988:477..6222- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCCGACGGTGCCCCGCGGGGGGGGGGAGGACGGAGGAGTGTTCTGCGT
CGATTCGGCTGGGAAGAGGTATGTTGTGTGTGGGTTTGGGTGGTACTTAT
TGGCCCGCGGCCGTTTGTGCTGGCGGCTGATTGGCTCACTCTACAAGGTG
CTGCCGGCTGATTGGTCTGGTCCGTGGTATCACGTCGCATTTGTTTCTTG
AACAAGAGGTTTGGCTCCCCCATGTTGTAGGCTACATATTTCGACAATGC
AGTGTGTGTGATAGTCAATTCCGCGATCTTGATATTTACAATCCAGCCCT
GTCTTATTTATCTCACACCACGTACGCCCCGTCCGCTCCCTCCCCTTCTG
CCAATCAACGCCCCGCGCCGCGCGAAGCACGGCGTTGTCCGTTTCCCTCG
GCCGTGCCGCTTTCACGATAGACCCTGGCTACATCGAGGTTCTACCCGAC
GGCGATCTGTTCGTAACGTTGCAAGACAAGCCAGAGGACAAGCCAGAGGA
CAAGTCATGCAATCGGTGAGTGTAGCTTGCAGGCGCCCCAAGAGGGGCGC
TTGGAGCAGCATGTGTGGCAGCTTCCATGGAGCGTGTGTCGAGTGTAGGC
TCTGCAGGCGAGACCGTGCTTCGCCGAAAATATATTGGGAGGCTGGCGTG
TTTTCGCGATTGTGAACAATATCATCAGTTTGAAACATTAAAATGTTGAC
GGAGGGAGGGGGGCTAACTTATAGGTGAAGCTTGGACCATCTTCCCTCTT
GAAAAGGTGGGGACCCCAACGCTCGCTCTAAGTTTTTGAAATCATTTTAT
ATTTTAGGGGGCTAACTTATACCTTGCTCTCAGAATGTGTGTTGCAATAA
AATATGTCAGAGTGCGGCTTGGAGTATCGAAGAGCCGCCGGCCGCTAAAA
CGCCGAACGGTGCAGAGAACGTCACCGCCTACGCGAATTTACTCACAATC
TATACTAGTACAAGTAGTGCGCATGTTTTTAGAAACCCGAGAACATGGGA
CCAGCTGCCGGGGGACTGAGCCCGACGTCCGTTGAAATCGGAAGAAAGTA
CCGGGGAAGGACCACAGGCGGGATGCGATCCTTCCAATCCGTCGGAAGGA
AGACAATAATACCATACATACATGCTGTTCATACGCGTACGTGTTGAGCT
TCGGCGTCCTGATGGATTCGAAGCGATCCAAGAGGGAGGTGAAACGGAGC
AAACATTTCTGCTCCTCCAACCCCTGTTAAGGCCGAATGAAGTGTTTCGT
TGTGGAGGCGGGAAAAAGTGCGTACATGCGGGCACTACCGTAACGCGCCA
GCGTCGCGAAGCATTCGAAATGTTGCGAGTCGAGAGGGTTAAGCAGCTTC
CGCGGCTGCAAGACGCCGGAAGGAAACGGAGGCCCATGCCTACCGTGCGC
TCGTCTTGGCGTCGCCCTGAACCATCCTGCCATCTCCCCCAACGAAAGTA
AATACGGCAAGACGCGGGTAGAGACCCCCCCCCCCCCCCCCAATAGCAAA
ACGATCCCGCGGGAACGCGGCGGGCGCCGACGCGGCGGGGATGGGTGGCG
GGGCTTTGTAGGGATGCGAGGTCTATGGTCTAACGACTACGGCATGCACG
ATCAATGAGTACAATGAGTACACCCCCCAGGCCCCGCCCCCACCCCCATA
AGTCATTCGTTCATGAAACATTCGGCAGTTCGCGGCCCACGACGACTCTA
AGTGCGCCCCCCCCCCCCCCCCATGCCTTTATAATTTCGCTTGCGGACGC
AGATCGGCAACGCTGTCGCCCTGGACTGGGAGTGCAGTGGCCTCTCCTCG
CGCGGCATTATCAACAAAAACAGGCGGCAGCAACGGTAGCGGCGTTCACG
TGAGTGAATTTTGGCCCTATACCCGAATCGTATACCGTTGTCTAAAACAA
GCCGCCGGGCGAGTGACGAGGGGGAGTTGGCGGCCGACCCTGAGCGGCGT
TTGGACATTTCGAGTTTCGGAAATGCGAGATATAGCCGGGTGTTTATGCC
GCCATTTTTTACCGTAACGCGTTCAAAATACGGTGGCAAGGTGGAGCATG
GCGGGGCTTGCATAAAACGAACCTCGAGCATTGGGCTGTGAAAGCGCCGT
TACGTGGGGTGTCGCCGGGGTCGTATTGGGGCCGTCTCGTTTCACGGGTT
ACCGTACCGCCTCTTCTTCGCGACGTTGGACACGAAATGTTCAACGCGTG
GACGCAAGTACCGCTCTCATCCGTGAGCGTCGACGGCTGTTTCGAAAAAA
AGCTTATCAATGCCAACTAGGCACAATAGCGGGTTACACGAGTCAAACAC
AGAGGGATAGAGTCGGTCTGCCCCGACTTCTAGGAGATGGCCAGTCACTC
CTGAATTTAGCTGTGATGTGATACTCCGGGATCTCGATACTTGTAGTGGG
AAGCCCCCCCCGCCCCCTCCACTGCGTTATAGCATCTCTTCAGTGACATT
ACAAACAGACCCACAACCCGTGCGCATATTCTCCGCACAACATAAACTTG
GAAACTTGCTCCAACAGCATGGGTCGTCGACGCCAGGAAAATCTTTGAAG
AGCAGGATGCTCGGCAAGGGAGGGGGAGGGAGCTCGTTCGCTTCGGGGAC
TCGTCCGGCCCAGGGCGGGGTGATCATCAAAATGGACTTTGTCCGGATAG
AACACTAGACGAGGTGGCCAGAAAATCGGCTGCGCCCGTGGTGGTCGTCC
CGAACCATGCCGACAGGGTAGCTATATACAGTACACCAATACGAAGGCCG
CCTTTGCACTGTAGTCGTGGGGACTACGGCACCTCTTGAGCGCACTCAAT
GCGCAGGACCATCAGTTGACTCTTCAGCAACCTTCTGCGCGTGCCGTGTG
GCGCCTTGACGGGGATCACTTTATAAAAACACTACGTACGGCGAAGGCGT
TGGCCATCCGGTACGGGCGGTGTAGGAAATGTGGCAAAACAAGCGGGAAA
TCAACTACTATCTATACCATCTTAGCGTCATGTGCGTTGCCGTAACACTT
TGTGTACGGTTGTTCCGTAAAGTAGAAGACGCATGCGGGCGGGTGGAGAG
GCGGCGGCACCGGGTTCCGTTCGCTTCGTGCGCATTTATCGCGTGTAGAT
AAGGCGTTGTGCCGAAAAAGGCGCAGCTTCTAAGGGTTGAGCTATTATAC
AGAGTGTTTACTGTGCGGTTACTGGTGACGAAGGACGCCATGGGGTTGTA
CCACGCACGATTACGGCACTGAGGTACGGGGCAGCAAGCGCGCGCGTTAG
GTGGTTGTTGTTTCCCTTCGGAAATACGAGTAGCTGAAAAGCTTCCGGCA
TCGGAGCTACCCGCGTTACGACGCGGATTTGTTTGCCTGTGAGTCCTGGT
CACTGCGTCGGGGGAACCGTTGCGAAGACCTCCCGCGACGGCAGCAGCCC
AAGCTTGACTTGACCGGCGACGGGCGCAAAGGTTTCGAAAGTATTTAAGC
TTGAGCAGATCGGTGGCCTTGCAGCCTCCCTGGCTGAAGGCAATATTGTT
TCGCGTCGCGCCGCGGACGAAACGATCCGATCTTTTATTCCTTTTCGTTG
TCAAGATTTGATTTTTTCGCGCCCAAGGGGAAATGTGATACTGTACGACA
CTCTGTTTACGAGTTTTCGATGTCTGTTGGAAATACGCGTGTCTGGGGCG
GGTGGGGAAGAGGAGATGATTCTGCAATACCATCGTCATACGTTTAGCGC
ACGCCTCAATATAATTAACCTGGACAATCAAACCTCCCCTAACAGCCAAG
CGCTGGACCCCAAACACTCGCTCTACGGCTGTAATTGATTGTTTTTCGTT
CAGAGGGGTAGCGGGAACGGCAGCACCAGTTGGTGGTCGCTTTTACCGTT
GTTGAGCAAAAGGTCTTCTCCTTGTCCCACCGCCTTCGATTTCGTAGGCC
AACCGCGTGGTTACAGTGAGTTTCTATCGGTGCCAAATCATGGGTTGCTG
TTCCACTGGCACGTGTGTTGAGGTAGCCGAGATGCAGCAGTAAAGTAGAG
GATACGCGATAATAGGGAATATTTGTGGCGTTTCTGTGGCAGTGTAGGTC
TTGAGGATTTTCCAGGGCGATGTTTGGTTTGTCGACGGTACTGATTGCTC
AGGTTGGCGAGTTTAGGAGGAGTGAGTATATGTCGGGCCGGCGAATCACC
ATTTGGTAGTTTCGAACTCCGAGCGGATTTCGTCTCCTTTTGATCTCTCG
TCCTTTTTACGTCGGCGGCCGTCCAGCAAGGCCACGCACCGATTGGGAAC
TTTCGGCGATACCGGTCAATATGCGTGTGTTGGATAGCCAGAAGTTCCCG
TTTTTCGTTCGAAATTTGTCTTGCGCGCTCCCGTTGGCAACGCTCGGACA
GACCGATTAGAGTAGGGGCAGTATCTTTGGTTATTGATTTATTAGCACGC
AAATTCTACGTCGAAGGTGTTACTATTTTATGCCGACCCTTGGTAAGTGA
TTGGCAGTTGGTCGATCGGTTTGTACGGGGTATAGCTCTAGTGTATTTCA
AAGTTGTATGTTGTATATCAAGCTTGTCTCTACGTTGGGGTTCATTTTTG
TTATAGCAGAGTGGATAAGTACGCCTAAACCCCTGCCACGTGCCCTGCGA
GAGGAAACCATTTTGGCCATTACGAAGAGGGTGTTGTAGCATATGTCACA
TATACCACCATTTTAGGAGTCGTAGTACTTTACATGTAGCAATCGGCGCA
GGACGATATCACACGTGTGTTAATGGTTCTTCTGTAGCTGAACTTGGTAT
TTGGCTGCGCCCGCATGCAGGCGGAGGCTAGACTGCGTGTGTTTTTAAGA
GCTAGGTTTGCGCGACGCTTAAAGTTTGAGTCGCTCTCTCTGCGTATTGT
ATGGCGGCGGTTTCTGCGTCGGTATAGCTAGCTGTAGCACGGAATTTCGA
GCCCGAAGTGATTTGCCGTGGGAGGGGTCTGAGCGCACCGCACCTGCTCC
GCTTACCATCTTCTTTACAAGTATATTCTTACCCATGTCGCCGGAGCGTG
GTGCCGACTGTGACGTGTGAATTCGCTTCGTTGGACCGCAAAGCGCGCCC
CGCAGGCGACGCCATCGCAATACGTTAGGTGTGGCAAAGTCAAGCATGCA
TGGTTGGGGCCTCGACGTTCAGTAGTGGCGCGGTTGCCATCGCACACGCT
GCGCTGAGCTCTTTCCCACCTGCCCGGTGTCACGAAGAAGAAGAGGAGAA
CGCGCGGGTCTGCCGCGGTAGTGTCCCTGCGTACTGGAGAAAAAAGACCT
CCACGAAGAGCTTCCGTCGAGTAGAGGGAGGAGGGGGGGCAGTATCCACC
CACCCACAATATCGACCGAATCTTCAGGGCGGCATGGGGCAACCACTAAC
CACTTTTCCATTTTTAGTCTTGCCTGCTTCCTCTATGTGAGTTTAGCGTG
AGCGTAGCCAGGCCTTAGCTAGTAGATCTTACGTCTATAAACCCCAAGAA
TATTGTTTGGGGTGGAGATACCTCGGGCTGTAGCAGTCTAGTGTGATTGC
TCTGGTAACAGCTCGAGTTCAACAGCTGATATCTCCACTCCCGGATTCCA
AATAGGCGAAAGAGAGTGTTACTACACGTAAATGATCAGCGAAAAACGGT
ATACTTGTATACACCAGACTTCGCGCAGCATCAGGGAGATGCCACACCAA
CTTGTTGTTCAGTCGTCATCTACTCGTGTGCCTGACTGCCCCTGCCACAT
CTGAATCAAGATATTGGGCGCCCACAACCAACCCAGGAAGTTTCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12988:477..6222-

>mRNA_S-dermatodea_contig12988.1812.1 ID=mRNA_S-dermatodea_contig12988.1812.1|Name=mRNA_S-dermatodea_contig12988.1812.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at S-dermatodea_contig12988:477..6222- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCCGACGGTGCCCCGCGGGGGGGGGGAGGACGGAGGAGTGTTCTGCGT
CGATTCGGCTGGGAAGAGCCGCCGACGGTGCCCCGCGGGGGGGGGGAGGA
CGGAGGAGTGTTCTGCGTCGATTCGGCTGGGAAGAGCACGGCGTTGTCCG
TTTCCCTCGGCCGTGCCGCTTTCACGATAGACCCTGGCTACATCGAGGTT
CTACCCGACGGCGATCTGTTCGTAACGTTGCAAGACAAGCCAGAGGACAA
GCCAGAGGACAAGTCATGCAATCGCACGGCGTTGTCCGTTTCCCTCGGCC
GTGCCGCTTTCACGATAGACCCTGGCTACATCGAGGTTCTACCCGACGGC
GATCTGTTCGTAACGTTGCAAGACAAGCCAGAGGACAAGCCAGAGGACAA
GTCATGCAATCGATCGGCAACGCTGTCGCCCTGGACTGGGAGTGCAGTGG
CCTCTCCTCGCGCGGCATTATCAACAAAAACAGGCGGCAGCAACGGTAGC
GGCGTTCACATCGGCAACGCTGTCGCCCTGGACTGGGAGTGCAGTGGCCT
CTCCTCGCGCGGCATTATCAACAAAAACAGGCGGCAGCAACGGTAGCGGC
GTTCACCATGGGTCGTCGACGCCAGGAAAATCTTTGAAGAGCAGGATGCT
CGGCAAGGGAGGGGGAGGGAGCTCGTTCGCTTCGGGGACTCGTCCGGCCC
AGGGCGGGGTGATCATCAAAATGGACTTTGTCCGGATAGAACACTAGCAT
GGGTCGTCGACGCCAGGAAAATCTTTGAAGAGCAGGATGCTCGGCAAGGG
AGGGGGAGGGAGCTCGTTCGCTTCGGGGACTCGTCCGGCCCAGGGCGGGG
TGATCATCAAAATGGACTTTGTCCGGATAGAACACTAG
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