mRNA_S-dermatodea_contig12983.1810.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12983.1810.1
Unique NamemRNA_S-dermatodea_contig12983.1810.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12983.1810.1 vs. uniprot
Match: A0A6H5KTJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ7_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.220e-27
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:   40 RANIGGAD----GILARLRNAVKRMNVRLIELRNSEK-KIAYDITVMSKLIQTQNKIIHEELEIKLGINLPSLSPHLNLERELKKRADAAYLAVKDRVDRAKRTAA 342
            +AN GG +     ++  L+ AVKRMNVRLIELR+    KI Y+ T+MSKLI TQNKII +ELE KLG+NL SL+PHL+LE ELKKR+D AYLAVK++VDRAKR+ A
Sbjct:   31 KANPGGVNVAPQRVVDHLKAAVKRMNVRLIELRSGNSTKIEYNTTIMSKLINTQNKIITDELEQKLGMNLTSLAPHLDLEGELKKRSDTAYLAVKNKVDRAKRSEA 136
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BLAST of mRNA_S-dermatodea_contig12983.1810.1 vs. uniprot
Match: D8LCB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB6_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.770e-27
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:   40 RANIGGAD----GILARLRNAVKRMNVRLIELRNSEK-KIAYDITVMSKLIQTQNKIIHEELEIKLGINLPSLSPHLNLERELKKRADAAYLAVKDRVDRAKRTAA 342
            +AN GG +     ++  L+ AVKRMNVRLIELR+    KI Y+ T+MSKLI TQNKII +ELE KLG+NL SL+PHL+LE ELKKR+D AYLAVK++VDRAKR+ A
Sbjct:   11 KANPGGVNVAPQKVVDHLKAAVKRMNVRLIELRSGNSTKIEYNTTIMSKLITTQNKIITDELEQKLGMNLASLAPHLDLEGELKKRSDTAYLAVKNKVDRAKRSEA 116
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12983.1810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTJ7_9PHAE3.220e-2763.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCB6_ECTSI3.770e-2763.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12983contigS-dermatodea_contig12983:2129..2828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size412
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924270.0086987-CDS-S-dermatodea_contig12983:2128..24431622924270.0086987-CDS-S-dermatodea_contig12983:2128..2443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12983 2129..2443 -
1694079139.5390382-CDS-S-dermatodea_contig12983:2128..24431694079139.5390382-CDS-S-dermatodea_contig12983:2128..2443Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12983 2129..2443 -
1622924270.0176077-CDS-S-dermatodea_contig12983:2732..28281622924270.0176077-CDS-S-dermatodea_contig12983:2732..2828Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12983 2733..2828 -
1694079139.548876-CDS-S-dermatodea_contig12983:2732..28281694079139.548876-CDS-S-dermatodea_contig12983:2732..2828Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12983 2733..2828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12983.1810.1prot_S-dermatodea_contig12983.1810.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12983 2129..2828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12983.1810.1

>prot_S-dermatodea_contig12983.1810.1 ID=prot_S-dermatodea_contig12983.1810.1|Name=mRNA_S-dermatodea_contig12983.1810.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=137bp
AGIIARAHKEVDNRANIGGADGILARLRNAVKRMNVRLIELRNSEKKIAY
DITVMSKLIQTQNKIIHEELEIKLGINLPSLSPHLNLERELKKRADAAYL
AVKDRVDRAKRTAAVNGGAGSTASNGVAGVARQPIKE
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mRNA from alignment at S-dermatodea_contig12983:2129..2828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12983.1810.1 ID=mRNA_S-dermatodea_contig12983.1810.1|Name=mRNA_S-dermatodea_contig12983.1810.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=700bp|location=Sequence derived from alignment at S-dermatodea_contig12983:2129..2828- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGGCATCATCGCCAGGGCACACAAGGAGGTGGACAATCGCGCCAACAT
CGGCGGCGCCGACGGCATCCTTGCCCGTCTCAGGAATGCCGTGAAGGTGT
GCTGGCAACGGCGTGTTTCAGGGTGGTGGGGGAGTGGGAGGAGCGGACAA
AATATCATGGGTTCTTGTAAGGATGATGGCGGCGGCGGGGTGCTATCCTA
TTTCAAGAGTAGTTTATTGTCCTATGTATCACTCAGGGATGCCAATGTAC
CTCTACGATGTGTGCGCTGCTGTTTCTCTAGCGTGCTCCGCTGCGCCGCC
CGTCCCCCTACGATCGGAACGTCCTCTGATCACACCCCCGCTCCGCTCCG
CCCCGCGCTCTCGCGCTCCCGCGCTCGACGGGCAGAGGATGAACGTTAGG
CTGATCGAACTGCGCAACTCGGAGAAAAAGATCGCGTACGACATCACGGT
CATGTCGAAGCTCATCCAGACACAGAACAAGATCATCCACGAGGAGCTCG
AGATCAAGCTGGGGATCAACCTGCCGAGCCTCTCTCCCCACCTTAACCTC
GAGCGGGAGCTGAAAAAGCGGGCGGATGCGGCTTACCTGGCGGTGAAAGA
CAGGGTGGATAGGGCGAAGAGGACCGCCGCTGTCAACGGGGGCGCGGGGT
CGACGGCGTCGAATGGGGTGGCGGGGGTAGCCCGGCAGCCGATTAAGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12983:2129..2828-

>mRNA_S-dermatodea_contig12983.1810.1 ID=mRNA_S-dermatodea_contig12983.1810.1|Name=mRNA_S-dermatodea_contig12983.1810.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at S-dermatodea_contig12983:2129..2828- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGGCATCATCGCCAGGGCACACAAGGAGGTGGACAATCGCGCCAACAT
CGGCGGCGCCGACGGCATCCTTGCCCGTCTCAGGAATGCCGTGAAGGCCG
GCATCATCGCCAGGGCACACAAGGAGGTGGACAATCGCGCCAACATCGGC
GGCGCCGACGGCATCCTTGCCCGTCTCAGGAATGCCGTGAAGAGGATGAA
CGTTAGGCTGATCGAACTGCGCAACTCGGAGAAAAAGATCGCGTACGACA
TCACGGTCATGTCGAAGCTCATCCAGACACAGAACAAGATCATCCACGAG
GAGCTCGAGATCAAGCTGGGGATCAACCTGCCGAGCCTCTCTCCCCACCT
TAACCTCGAGCGGGAGCTGAAAAAGCGGGCGGATGCGGCTTACCTGGCGG
TGAAAGACAGGGTGGATAGGGCGAAGAGGACCGCCGCTGTCAACGGGGGC
GCGGGGTCGACGGCGTCGAATGGGGTGGCGGGGGTAGCCCGGCAGCCGAT
TAAGGAGAGGATGAACGTTAGGCTGATCGAACTGCGCAACTCGGAGAAAA
AGATCGCGTACGACATCACGGTCATGTCGAAGCTCATCCAGACACAGAAC
AAGATCATCCACGAGGAGCTCGAGATCAAGCTGGGGATCAACCTGCCGAG
CCTCTCTCCCCACCTTAACCTCGAGCGGGAGCTGAAAAAGCGGGCGGATG
CGGCTTACCTGGCGGTGAAAGACAGGGTGGATAGGGCGAAGAGGACCGCC
GCTGTCAACGGGGGCGCGGGGTCGACGGCGTCGAATGGGGTGGCGGGGGT
AGCCCGGCAGCCGATTAAGGAG
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