mRNA_S-dermatodea_contig1298.1805.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1298.1805.1
Unique NamemRNA_S-dermatodea_contig1298.1805.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1298.1805.1 vs. uniprot
Match: D8LTI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTI3_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 2.520e-28
Identity = 69/120 (57.50%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:  283 EHMSRAQVEACTALITNFPAAVPPGQREPMLESFTALGALIVWPRPDEALATFPTPALARQALSF----NTILAVELLSQAREEKRKAYQRVELARPGRPPADVSSASRLIFSGLGISRP 630
            E MSR QVEACTA+++NFP A+PPGQR+ ML+SF +LG L+VWPRPDEAL TF TPALARQA+S     +++L VELLSQAR EKR  Y+R        P  DV S     +S  G S P
Sbjct:  442 EEMSREQVEACTAVVSNFPVALPPGQRDSMLQSFVSLGGLVVWPRPDEALVTFATPALARQAVSARNNRDSVLFVELLSQARVEKRTGYRRGGAFLSKNPKLDVKSERHETWSWQGTSTP 561
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BLAST of mRNA_S-dermatodea_contig1298.1805.1 vs. uniprot
Match: A0A6H5JL83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL83_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.380e-24
Identity = 59/91 (64.84%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:  283 EHMSRAQVEACTALITNFPAAVPPGQREPMLESFTALGALIVWPRPDEALATFPTPALARQALSF----NTILAVELLSQAREEKRKAYQR 543
            E MSR QVEACTA+++NFP A+PPGQR+ ML+S  +LG L+VWPRPDEAL TF TPALARQA+S     +++L VELLS AR EKR  Y+R
Sbjct:  442 EEMSREQVEACTAVVSNFPVALPPGQRDSMLQSLVSLGGLVVWPRPDEALVTFATPALARQAVSARNNRDSVLLVELLSLARLEKRTGYRR 532
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1298.1805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTI3_ECTSI2.520e-2857.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL83_9PHAE1.380e-2464.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1298contigS-dermatodea_contig1298:2..2157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_005720.1
Exons3
Model size1075
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1298.1805.1prot_S-dermatodea_contig1298.1805.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1298 197..1838 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.665369-UTR-S-dermatodea_contig1298:1..1961622924269.665369-UTR-S-dermatodea_contig1298:1..196Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 2..196 +
1694079139.2996078-UTR-S-dermatodea_contig1298:1..1961694079139.2996078-UTR-S-dermatodea_contig1298:1..196Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 2..196 +
1622924269.7160823-UTR-S-dermatodea_contig1298:1838..21571622924269.7160823-UTR-S-dermatodea_contig1298:1838..2157Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 1839..2157 +
1694079139.3358681-UTR-S-dermatodea_contig1298:1838..21571694079139.3358681-UTR-S-dermatodea_contig1298:1838..2157Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 1839..2157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.6822238-CDS-S-dermatodea_contig1298:196..4081622924269.6822238-CDS-S-dermatodea_contig1298:196..408Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 197..408 +
1694079139.3076-CDS-S-dermatodea_contig1298:196..4081694079139.3076-CDS-S-dermatodea_contig1298:196..408Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 197..408 +
1622924269.6937087-CDS-S-dermatodea_contig1298:1063..12001622924269.6937087-CDS-S-dermatodea_contig1298:1063..1200Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 1064..1200 +
1694079139.3164752-CDS-S-dermatodea_contig1298:1063..12001694079139.3164752-CDS-S-dermatodea_contig1298:1063..1200Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 1064..1200 +
1622924269.7064857-CDS-S-dermatodea_contig1298:1626..18381622924269.7064857-CDS-S-dermatodea_contig1298:1626..1838Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 1627..1838 +
1694079139.325619-CDS-S-dermatodea_contig1298:1626..18381694079139.325619-CDS-S-dermatodea_contig1298:1626..1838Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 1627..1838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1298.1805.1

>prot_S-dermatodea_contig1298.1805.1 ID=prot_S-dermatodea_contig1298.1805.1|Name=mRNA_S-dermatodea_contig1298.1805.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=187bp
MSPHPPLSRLTIPSSVTHSSYLRCCAVCIEHMSRAQVEACTALITNFPAA
VPPGQREPMLESFTALGALIVWPRPDEALATFPTPALARQALSFNTILAV
ELLSQAREEKRKAYQRVELARPGRPPADVSSASRLIFSGLGISRPRARPT
GTSAGKSNSTGSSKGRIRGRGAKTAQATESTDSWDL*
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mRNA from alignment at S-dermatodea_contig1298:2..2157+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1298.1805.1 ID=mRNA_S-dermatodea_contig1298.1805.1|Name=mRNA_S-dermatodea_contig1298.1805.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2156bp|location=Sequence derived from alignment at S-dermatodea_contig1298:2..2157+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTGACCAATCAGATCACCGACGGATTGTTTTGACAGATTTGTTTTTGG
TCGATAAGACAGGCCCTTACGGCAAGACGATTTTGAGTAGATATGAGCAT
CATATCGCAAGCTCCCAGCTGCACGCTACTCAGGTTGGCCGCGACTCGTT
CGCACCATATGGTGGGTCCCAACGTCGCCGTTGCAGCATCGGCTTATGTC
CCCTCATCCACCACTTTCCAGGTTGACGATACCCTCCTCCGTTACTCATT
CATCATACCTTCGCTGCTGCGCCGTTTGTATAGAGCACATGTCTCGGGCG
CAGGTGGAAGCATGCACTGCGCTTATCACCAACTTCCCTGCGGCGGTACC
GCCCGGCCAGCGTGAGCCCATGCTGGAGTCCTTCACTGCGCTGGGCGCCC
TTATCGTGTGAGAAATACAGCACATACATGTTTCCCATGGAGTTCCCGCG
TTCGCGGCACGGCACCAACGGTAGCTGCCTTCCCTCAACCGCGGAATACG
TCGTACTTACTGTGTGTTACAAGCTCGATGTTGCGGCTTCGTTTGTGGCG
CCCTTTTCGCAAATGGCCGGGCGGCCACATACTTACCAAATGGCGGCAAA
GCAAGCCAGTGGCCGCGAAAGCTTCAGCGGTCGTATTGCAACAATGTAGA
GGGCGATGGTGAACATAAGTATTCACCGTCAGTTAATCCCGAGGTAATGT
TTAGTGTTCCGATGACAAAGCCGTGCTGGAATGGTTTGAGCTAGCTCGCC
AAGACTGTTGGCGTTGCATTCGCCCGTCACCAACCGCTATTATAGCGTTG
ACGTCTTGCTTGTTTGGCAAGCGGCAAATTCGAGGTATTATTTATTTATT
GGTGGCGTGTATTGCTGTGTTCACGCACGCGGTTTCGGTGCCACTGAGTT
TGCTTTGCAACGCTCACAAATTGCATAACGACACTGAACACTATATTATT
TGGTGGTGGTAGACACGTCAGCCTTTACGTCGAACCACTTTTTTTCACAA
CTTAAGCGCTGATCTCGTTCGCTACGTTTCCCGTTGCACATTTTTCAAAC
CCGGTTCTACAGATGGCCGCGCCCTGACGAAGCGCTGGCGACGTTCCCCA
CGCCAGCGTTAGCGAGACAGGCTCTTTCTTTCAACACAATCTTGGCCGTA
GAACTCCTGTCGCAGGCAAGGGAGGAAAAGCGAAAGGCCTACCAACGAGG
TGAGATCGCGGCCCCTTTCGTTTGTGGCACCCTCATGCCGGTGCACCGCA
GTGCTTTTCTTCCGTGTGAACGATGCCGGATTGTAGTCAGCCAGTTATGT
GCGGTCGGTCTCGGATCTCTTCACCGGGCGGTTTTTTGCTGCCTGTGTAT
TGGTATGGTTTTCGTGTGCGTCCGACCCATTTTGCCGCCTTCGCCAGAGT
ACAGCAGTAACCACATCTGAGCTGCCAGCTGCTCTTTGGACGACGCCCCG
TCCGTCGATCGTTGTATCAGGTGTATATATAGGACGAAGCAATGACGCGA
TGGGCTTGCCCTCGAGTACGTCTCCCGAAGGTGGTGTGCGTATTTCGATT
GGTCTGCCGTCTCTCACCACCCTCTTCTCCCGCGTCGCCCTCCTTTGCGC
TGCACGACTACTCCCACGGCACCAGTGGAGCTAGCCCGCCCGGGCCGCCC
GCCCGCTGACGTATCGAGCGCCTCAAGGTTAATCTTCTCCGGTCTTGGGA
TAAGCCGGCCCCGAGCACGGCCTACGGGCACATCTGCAGGGAAGAGCAAT
TCAACGGGTTCTTCCAAAGGAAGGATAAGGGGACGCGGAGCCAAGACGGC
GCAGGCGACGGAGAGTACCGACTCGTGGGACCTGTAGAGCGGGCATATGC
CGTCAGAGGGGGGACTGACGGAAATTGTAGACCAGGCCGACCCTTTTTCT
CCGTGTGTAGCTCGAAGAGTTTTTTTTTTCCATTGCGCTTTATTGATTCG
TCTCAACAGACCGTTAGGTGATGTATGTACGTAGTTTGACGTGTGCAGGT
AAACGGTAAATGGTGACACCGTCTTATATTCTTGGTTTCGTTAACGTATC
ACGAAAGTATGGTACTGGTATCTTACATATATACTATTAATTGTAGGTAG
CCACGGGCTGGCTATTAATATTAATATTAATATTATTAGGCTACGCCCGT
GAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1298:2..2157+

>mRNA_S-dermatodea_contig1298.1805.1 ID=mRNA_S-dermatodea_contig1298.1805.1|Name=mRNA_S-dermatodea_contig1298.1805.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at S-dermatodea_contig1298:2..2157+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCCCTCATCCACCACTTTCCAGGTTGACGATACCCTCCTCCGTTAC
TCATTCATCATACCTTCGCTGCTGCGCCGTTTGTATAGAGCACATGTCTC
GGGCGCAGGTGGAAGCATGCACTGCGCTTATCACCAACTTCCCTGCGGCG
GTACCGCCCGGCCAGCGTGAGCCCATGCTGGAGTCCTTCACTGCGCTGGG
CGCCCTTATCGTATGTCCCCTCATCCACCACTTTCCAGGTTGACGATACC
CTCCTCCGTTACTCATTCATCATACCTTCGCTGCTGCGCCGTTTGTATAG
AGCACATGTCTCGGGCGCAGGTGGAAGCATGCACTGCGCTTATCACCAAC
TTCCCTGCGGCGGTACCGCCCGGCCAGCGTGAGCCCATGCTGGAGTCCTT
CACTGCGCTGGGCGCCCTTATCGTATGGCCGCGCCCTGACGAAGCGCTGG
CGACGTTCCCCACGCCAGCGTTAGCGAGACAGGCTCTTTCTTTCAACACA
ATCTTGGCCGTAGAACTCCTGTCGCAGGCAAGGGAGGAAAAGCGAAAGGC
CTACCAACGAGATGGCCGCGCCCTGACGAAGCGCTGGCGACGTTCCCCAC
GCCAGCGTTAGCGAGACAGGCTCTTTCTTTCAACACAATCTTGGCCGTAG
AACTCCTGTCGCAGGCAAGGGAGGAAAAGCGAAAGGCCTACCAACGAGTG
GAGCTAGCCCGCCCGGGCCGCCCGCCCGCTGACGTATCGAGCGCCTCAAG
GTTAATCTTCTCCGGTCTTGGGATAAGCCGGCCCCGAGCACGGCCTACGG
GCACATCTGCAGGGAAGAGCAATTCAACGGGTTCTTCCAAAGGAAGGATA
AGGGGACGCGGAGCCAAGACGGCGCAGGCGACGGAGAGTACCGACTCGTG
GGACCTGTAGTGGAGCTAGCCCGCCCGGGCCGCCCGCCCGCTGACGTATC
GAGCGCCTCAAGGTTAATCTTCTCCGGTCTTGGGATAAGCCGGCCCCGAG
CACGGCCTACGGGCACATCTGCAGGGAAGAGCAATTCAACGGGTTCTTCC
AAAGGAAGGATAAGGGGACGCGGAGCCAAGACGGCGCAGGCGACGGAGAG
TACCGACTCGTGGGACCTGTAG
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