mRNA_S-dermatodea_contig12975.1804.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12975.1804.1
Unique NamemRNA_S-dermatodea_contig12975.1804.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12975.1804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12975contigS-dermatodea_contig12975:1509..1981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size473
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12975.1804.1prot_S-dermatodea_contig12975.1804.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12975 1518..1829 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.6184394-UTR-S-dermatodea_contig12975:1508..15171622924269.6184394-UTR-S-dermatodea_contig12975:1508..1517Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12975 1509..1517 +
1694079139.2740517-UTR-S-dermatodea_contig12975:1508..15171694079139.2740517-UTR-S-dermatodea_contig12975:1508..1517Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12975 1509..1517 +
1622924269.637675-UTR-S-dermatodea_contig12975:1829..19811622924269.637675-UTR-S-dermatodea_contig12975:1829..1981Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12975 1830..1981 +
1694079139.2913768-UTR-S-dermatodea_contig12975:1829..19811694079139.2913768-UTR-S-dermatodea_contig12975:1829..1981Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12975 1830..1981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.6294749-CDS-S-dermatodea_contig12975:1517..18291622924269.6294749-CDS-S-dermatodea_contig12975:1517..1829Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12975 1518..1829 +
1694079139.2836983-CDS-S-dermatodea_contig12975:1517..18291694079139.2836983-CDS-S-dermatodea_contig12975:1517..1829Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12975 1518..1829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12975.1804.1

>prot_S-dermatodea_contig12975.1804.1 ID=prot_S-dermatodea_contig12975.1804.1|Name=mRNA_S-dermatodea_contig12975.1804.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
MFILATIPHLTPMITTLGSAKRKPARTNCGAQRASAIIFFSQIRSGLTVE
GKTRRITPHTHTQNPKKTEGALCRQQGTITIKHCTKKSYRANTHAFYTLY
IRP*
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mRNA from alignment at S-dermatodea_contig12975:1509..1981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12975.1804.1 ID=mRNA_S-dermatodea_contig12975.1804.1|Name=mRNA_S-dermatodea_contig12975.1804.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=473bp|location=Sequence derived from alignment at S-dermatodea_contig12975:1509..1981+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCCACGACATGTTTATCCTCGCCACAATACCGCACCTGACACCGATGAT
AACCACACTGGGGTCAGCCAAACGCAAACCCGCACGTACAAACTGTGGTG
CACAGCGGGCCTCCGCCATCATTTTTTTTTCACAAATCCGTTCGGGGCTT
ACGGTGGAGGGCAAAACGCGCCGCATCACACCGCACACGCACACCCAAAA
CCCCAAAAAAACTGAGGGGGCACTCTGCCGCCAACAGGGAACAATCACGA
TAAAACACTGCACGAAGAAAAGCTACCGCGCGAACACACACGCATTCTAC
ACACTCTACATCAGACCTTGAAAAACGATGTTAAACACGAACATAGCTCT
ACGCTGGGTAAAAGCGACACGGGGAAAATTGTATACCGGTACTATTTAAT
ATGCCAAAAAAACGGCCAACCGTGTAAATTTACCAAACAAGCGCACCCAA
AAACTGTTGAGAAACGAGGCAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12975:1509..1981+

>mRNA_S-dermatodea_contig12975.1804.1 ID=mRNA_S-dermatodea_contig12975.1804.1|Name=mRNA_S-dermatodea_contig12975.1804.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig12975:1509..1981+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTTATCCTCGCCACAATACCGCACCTGACACCGATGATAACCACACT
GGGGTCAGCCAAACGCAAACCCGCACGTACAAACTGTGGTGCACAGCGGG
CCTCCGCCATCATTTTTTTTTCACAAATCCGTTCGGGGCTTACGGTGGAG
GGCAAAACGCGCCGCATCACACCGCACACGCACACCCAAAACCCCAAAAA
AACTGAGGGGGCACTCTGCCGCCAACAGGGAACAATCACGATAAAACACT
GCACGAAGAAAAGCTACCGCGCGAACACACACGCATTCTACACACTCTAC
ATCAGACCTTGAATGTTTATCCTCGCCACAATACCGCACCTGACACCGAT
GATAACCACACTGGGGTCAGCCAAACGCAAACCCGCACGTACAAACTGTG
GTGCACAGCGGGCCTCCGCCATCATTTTTTTTTCACAAATCCGTTCGGGG
CTTACGGTGGAGGGCAAAACGCGCCGCATCACACCGCACACGCACACCCA
AAACCCCAAAAAAACTGAGGGGGCACTCTGCCGCCAACAGGGAACAATCA
CGATAAAACACTGCACGAAGAAAAGCTACCGCGCGAACACACACGCATTC
TACACACTCTACATCAGACCTTGA
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