mRNA_S-dermatodea_contig12960.1799.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12960.1799.1
Unique NamemRNA_S-dermatodea_contig12960.1799.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12960.1799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12960contigS-dermatodea_contig12960:3253..3679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.1528256-CDS-S-dermatodea_contig12960:3252..35971622924269.1528256-CDS-S-dermatodea_contig12960:3252..3597Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12960 3253..3597 +
1694079138.901483-CDS-S-dermatodea_contig12960:3252..35971694079138.901483-CDS-S-dermatodea_contig12960:3252..3597Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12960 3253..3597 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.1622472-UTR-S-dermatodea_contig12960:3597..36791622924269.1622472-UTR-S-dermatodea_contig12960:3597..3679Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12960 3598..3679 +
1694079138.915331-UTR-S-dermatodea_contig12960:3597..36791694079138.915331-UTR-S-dermatodea_contig12960:3597..3679Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12960 3598..3679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12960.1799.1prot_S-dermatodea_contig12960.1799.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12960 3253..3597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12960.1799.1

>prot_S-dermatodea_contig12960.1799.1 ID=prot_S-dermatodea_contig12960.1799.1|Name=mRNA_S-dermatodea_contig12960.1799.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=115bp
LDPELCSADIQLNCRTPEPRLTTNNAAPLGRRRGYASRAWRDSPALCCPF
SLRELETTRRPSKGRGSRWGKKNQSSSSRSSSGAASSSTSEQKYHGGVLP
CVRPIQNGSLRPDK*
back to top

mRNA from alignment at S-dermatodea_contig12960:3253..3679+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12960.1799.1 ID=mRNA_S-dermatodea_contig12960.1799.1|Name=mRNA_S-dermatodea_contig12960.1799.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=427bp|location=Sequence derived from alignment at S-dermatodea_contig12960:3253..3679+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGACCCAGAGTTGTGTAGTGCAGACATTCAGCTGAATTGTCGCACTCC
TGAACCCCGTCTGACCACGAACAACGCTGCACCGCTGGGGAGGAGGAGGG
GTTACGCTTCCCGTGCTTGGAGGGACAGCCCCGCTCTGTGTTGTCCGTTC
TCTCTCAGGGAGCTAGAGACGACGAGAAGGCCAAGCAAGGGACGCGGCAG
CCGCTGGGGGAAAAAAAATCAGAGCAGCAGCAGCAGAAGCAGCAGCGGAG
CAGCCAGCAGCAGCACATCAGAGCAAAAGTATCATGGCGGAGTTTTGCCA
TGTGTGCGACCTATTCAGAACGGCTCTCTTCGGCCCGACAAATAGCCACG
AGGACCACCTCGACGATGGGCTCGGGAACGACCTCCCGAGGCCCATGGCG
GACGCCCCTGCAACGCTCGGTGCCAGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12960:3253..3679+

>mRNA_S-dermatodea_contig12960.1799.1 ID=mRNA_S-dermatodea_contig12960.1799.1|Name=mRNA_S-dermatodea_contig12960.1799.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at S-dermatodea_contig12960:3253..3679+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGACCCAGAGTTGTGTAGTGCAGACATTCAGCTGAATTGTCGCACTCC
TGAACCCCGTCTGACCACGAACAACGCTGCACCGCTGGGGAGGAGGAGGG
GTTACGCTTCCCGTGCTTGGAGGGACAGCCCCGCTCTGTGTTGTCCGTTC
TCTCTCAGGGAGCTAGAGACGACGAGAAGGCCAAGCAAGGGACGCGGCAG
CCGCTGGGGGAAAAAAAATCAGAGCAGCAGCAGCAGAAGCAGCAGCGGAG
CAGCCAGCAGCAGCACATCAGAGCAAAAGTATCATGGCGGAGTTTTGCCA
TGTGTGCGACCTATTCAGAACGGCTCTCTTCGGCCCGACAAATAGCTGGA
CCCAGAGTTGTGTAGTGCAGACATTCAGCTGAATTGTCGCACTCCTGAAC
CCCGTCTGACCACGAACAACGCTGCACCGCTGGGGAGGAGGAGGGGTTAC
GCTTCCCGTGCTTGGAGGGACAGCCCCGCTCTGTGTTGTCCGTTCTCTCT
CAGGGAGCTAGAGACGACGAGAAGGCCAAGCAAGGGACGCGGCAGCCGCT
GGGGGAAAAAAAATCAGAGCAGCAGCAGCAGAAGCAGCAGCGGAGCAGCC
AGCAGCAGCACATCAGAGCAAAAGTATCATGGCGGAGTTTTGCCATGTGT
GCGACCTATTCAGAACGGCTCTCTTCGGCCCGACAAATAG
back to top