mRNA_S-dermatodea_contig1295.1793.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1295.1793.1
Unique NamemRNA_S-dermatodea_contig1295.1793.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1295.1793.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.620e-11
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:   34 WASTGRKKFRVLSVVARSVLGAPGSAAVLERDFGEAGKLVDRRRGSLGPAYVEMVMFLRG--DYIPEDVP 237
            W       + +L+  AR V GAP SAAVLE DFG+AG+++   R +    YVEM++FL G  D IPED+P
Sbjct:   40 WWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIP 109
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BLAST of mRNA_S-dermatodea_contig1295.1793.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.320e-10
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:   16 EEVTAFWASTGRKKFRVLSVVARSVLGAPGSAAVLERDFGEAGKLVDRRRGSLGPAYVEMVMFLRG--DYIPEDV 234
            E+V  +W       + +L+ VAR V GAP SAAVLERDF  AG+++   R ++   YVEM+MFL G  D IPED+
Sbjct:  605 EDVLKWWKMWAHA-YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDI 678
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BLAST of mRNA_S-dermatodea_contig1295.1793.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.920e-9
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   58 FRVLSVVARSVLGAPGSAAVLERDFGEAGKLVDRRRGSL-GPAYVEMVMFLRG--DYIPEDV 234
            + +L+ VAR V GAP SAAVLERDF  AG+++   R ++    YVEM++FL G  D IPED+
Sbjct:    6 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDI 67
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BLAST of mRNA_S-dermatodea_contig1295.1793.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.540e-9
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:   46 GRKKFRVLSVVARSVLGAPGSAAVLERDFGEAGKLVDRRRGSLGPAY-VEMVMFLRG--DYIPEDV 234
            G   + +L+ VAR V GAP SAA LERDF  AG+++   R ++   Y VEM++FL G  D IPED+
Sbjct:    2 GTHAYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDI 67
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BLAST of mRNA_S-dermatodea_contig1295.1793.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.910e-8
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   16 EEVTAFWASTGRKKFRVLSVVARSVLGAPGSAAVLERDFGEAGKLVDRRRGSLGPAYVEMVMFLRG--DYIPEDV 234
            E+V  +W       + +L+ VAR V+GA  SAAVLE DF  AG+++   R ++   YVEM++FL G  D IPED+
Sbjct:  378 EDVLKWWKMWAHA-YPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDI 451
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1295.1793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L5L6_9PHAE1.620e-1147.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE1.320e-1048.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE3.920e-951.61Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KW12_9PHAE5.540e-948.48Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE1.910e-844.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1295contigS-dermatodea_contig1295:21039..21278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924268.592134-CDS-S-dermatodea_contig1295:21038..212781622924268.592134-CDS-S-dermatodea_contig1295:21038..21278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1295 21039..21278 -
1694079138.4787629-CDS-S-dermatodea_contig1295:21038..212781694079138.4787629-CDS-S-dermatodea_contig1295:21038..21278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1295 21039..21278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1295.1793.1prot_S-dermatodea_contig1295.1793.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1295 21039..21278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1295.1793.1

>prot_S-dermatodea_contig1295.1793.1 ID=prot_S-dermatodea_contig1295.1793.1|Name=mRNA_S-dermatodea_contig1295.1793.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=80bp
MLQTGEEVTAFWASTGRKKFRVLSVVARSVLGAPGSAAVLERDFGEAGKL
VDRRRGSLGPAYVEMVMFLRGDYIPEDVPE
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mRNA from alignment at S-dermatodea_contig1295:21039..21278-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1295.1793.1 ID=mRNA_S-dermatodea_contig1295.1793.1|Name=mRNA_S-dermatodea_contig1295.1793.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at S-dermatodea_contig1295:21039..21278- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCCAAACAGGAGAGGAGGTGACAGCGTTCTGGGCTAGCACCGGGAG
GAAGAAGTTCAGGGTTCTGAGCGTCGTCGCCCGGAGTGTGCTGGGTGCTC
CAGGGTCTGCTGCGGTGCTCGAGCGAGACTTCGGCGAAGCTGGCAAGCTG
GTCGATCGCAGGCGTGGGTCTCTCGGTCCGGCCTACGTGGAGATGGTAAT
GTTCCTACGGGGAGACTACATCCCCGAGGACGTGCCCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1295:21039..21278-

>mRNA_S-dermatodea_contig1295.1793.1 ID=mRNA_S-dermatodea_contig1295.1793.1|Name=mRNA_S-dermatodea_contig1295.1793.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig1295:21039..21278- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTCCAAACAGGAGAGGAGGTGACAGCGTTCTGGGCTAGCACCGGGAG
GAAGAAGTTCAGGGTTCTGAGCGTCGTCGCCCGGAGTGTGCTGGGTGCTC
CAGGGTCTGCTGCGGTGCTCGAGCGAGACTTCGGCGAAGCTGGCAAGCTG
GTCGATCGCAGGCGTGGGTCTCTCGGTCCGGCCTACGTGGAGATGGTAAT
GTTCCTACGGGGAGACTACATCCCCGAGGACGTGCCCGAGATGCTCCAAA
CAGGAGAGGAGGTGACAGCGTTCTGGGCTAGCACCGGGAGGAAGAAGTTC
AGGGTTCTGAGCGTCGTCGCCCGGAGTGTGCTGGGTGCTCCAGGGTCTGC
TGCGGTGCTCGAGCGAGACTTCGGCGAAGCTGGCAAGCTGGTCGATCGCA
GGCGTGGGTCTCTCGGTCCGGCCTACGTGGAGATGGTAATGTTCCTACGG
GGAGACTACATCCCCGAGGACGTGCCCGAG
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