mRNA_S-dermatodea_contig12935.1784.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12935.1784.1
Unique NamemRNA_S-dermatodea_contig12935.1784.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12935.1784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12935contigS-dermatodea_contig12935:5030..5463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size434
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924267.9488614-UTR-S-dermatodea_contig12935:5029..51241622924267.9488614-UTR-S-dermatodea_contig12935:5029..5124Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12935 5030..5124 +
1694079138.0086064-UTR-S-dermatodea_contig12935:5029..51241694079138.0086064-UTR-S-dermatodea_contig12935:5029..5124Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12935 5030..5124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924267.960078-CDS-S-dermatodea_contig12935:5124..54631622924267.960078-CDS-S-dermatodea_contig12935:5124..5463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12935 5125..5463 +
1694079138.0185843-CDS-S-dermatodea_contig12935:5124..54631694079138.0185843-CDS-S-dermatodea_contig12935:5124..5463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12935 5125..5463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12935.1784.1prot_S-dermatodea_contig12935.1784.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12935 5125..5463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12935.1784.1

>prot_S-dermatodea_contig12935.1784.1 ID=prot_S-dermatodea_contig12935.1784.1|Name=mRNA_S-dermatodea_contig12935.1784.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
MYGIVLYFFVLVVSKAHAKNLVRFVLCGHHFVPAHVPLALMGVQCALFWR
HHTAAIDLLIGEMPVMPPCGRFEQRGNLDVFFFLHCPALCLIAVPARLNL
ANPFGTLYRTRFP
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mRNA from alignment at S-dermatodea_contig12935:5030..5463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12935.1784.1 ID=mRNA_S-dermatodea_contig12935.1784.1|Name=mRNA_S-dermatodea_contig12935.1784.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=434bp|location=Sequence derived from alignment at S-dermatodea_contig12935:5030..5463+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGTGTTAAGCCAACAGTACGTACAGTGGTGTACGTGGTTGCCGATGGGA
GCCTGACCCCACGGGAGTGACTTTGCCCCCAGCCCGGCGCCAAACATGTA
CGGTATTGTACTGTACTTTTTTGTTTTGGTAGTGTCGAAGGCACATGCCA
AGAACTTAGTACGATTTGTTTTGTGCGGTCATCACTTCGTACCTGCACAC
GTTCCGCTTGCGTTAATGGGCGTTCAGTGTGCACTGTTTTGGCGGCACCA
TACCGCCGCGATCGACCTGTTGATCGGCGAAATGCCTGTAATGCCACCGT
GCGGCCGATTCGAACAGCGTGGTAACCTTGATGTTTTCTTCTTTCTGCAT
TGCCCTGCCTTGTGTCTCATCGCCGTCCCCGCTCGTTTGAACTTAGCTAA
CCCCTTCGGAACGCTTTACCGAACTCGTTTCCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12935:5030..5463+

>mRNA_S-dermatodea_contig12935.1784.1 ID=mRNA_S-dermatodea_contig12935.1784.1|Name=mRNA_S-dermatodea_contig12935.1784.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig12935:5030..5463+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTACGGTATTGTACTGTACTTTTTTGTTTTGGTAGTGTCGAAGGCACA
TGCCAAGAACTTAGTACGATTTGTTTTGTGCGGTCATCACTTCGTACCTG
CACACGTTCCGCTTGCGTTAATGGGCGTTCAGTGTGCACTGTTTTGGCGG
CACCATACCGCCGCGATCGACCTGTTGATCGGCGAAATGCCTGTAATGCC
ACCGTGCGGCCGATTCGAACAGCGTGGTAACCTTGATGTTTTCTTCTTTC
TGCATTGCCCTGCCTTGTGTCTCATCGCCGTCCCCGCTCGTTTGAACTTA
GCTAACCCCTTCGGAACGCTTTACCGAACTCGTTTCCCCATGTACGGTAT
TGTACTGTACTTTTTTGTTTTGGTAGTGTCGAAGGCACATGCCAAGAACT
TAGTACGATTTGTTTTGTGCGGTCATCACTTCGTACCTGCACACGTTCCG
CTTGCGTTAATGGGCGTTCAGTGTGCACTGTTTTGGCGGCACCATACCGC
CGCGATCGACCTGTTGATCGGCGAAATGCCTGTAATGCCACCGTGCGGCC
GATTCGAACAGCGTGGTAACCTTGATGTTTTCTTCTTTCTGCATTGCCCT
GCCTTGTGTCTCATCGCCGTCCCCGCTCGTTTGAACTTAGCTAACCCCTT
CGGAACGCTTTACCGAACTCGTTTCCCC
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