mRNA_S-dermatodea_contig12919.1775.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig12919.1775.1 vs. uniprot
Match: D8LFY1_ECTSI (Diphthine--ammonia ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY1_ECTSI) HSP 1 Score: 377 bits (968), Expect = 3.840e-121 Identity = 246/443 (55.53%), Postives = 272/443 (61.40%), Query Frame = 1
Query: 1 VLDETMVVNHSDDAFAPVALLRVIACHTEPKHLDTDGGRASSNTTPAATGTDXXXXXXXXXXXXXXTAHEGSGGLVYLSGAVTSAASAASSADADXXXXXXXXXXXXXSRQAAGCLAAARAALAGLGVSLRDVCFVHLYLRDMGHFAAVNEEYCQWFEGENPPSRSCIAAPLPEGCWIMLDVAALRGSGEALAKEGSACPTRQVLHVRSVSSWAPVCIGPYCQANTLGPGNALALIAGQIGLLPASMVLPPRRPAEEGEGEAGGRGRREV-----SCHGAELELCVSHASVVASAVGSSLSRGCAFATLYVSEEACL----------------AAAXXXXTTAEAGNAVHNATRPVRHAPPSS----------------WMQSMVDECRELIEEGFEREQAEAIAEAAGTGTGGAAGDEGDSAEEGWTSDPEELAKEAARKKV 1218
VLDET+VVNHSDD FAPV LLRV+ CHTEPK GG S+ D + EGSGGLVYLSG +A + XXXXXXXXX RQAA CL AAR L G+GV LRDVCFVHLYLRDM F+AVNEEYC+WFEGENPPSRSC++ PLP GC +MLD+ ALRGSGEALAKEG+AC RQVLHVRS+SSWAPVCIGPYCQANTLGPG AL+AGQIGL ASM P RR AGG +E H EL LCVSHAS VASAVG+S+SRGC FATLYVSEEA A A T E G R S ++ MVDECR L+E +EQAEA AEAAGT G++GDSAE+GWTSDPEELAKEA RK V
Sbjct: 173 VLDETVVVNHSDDMFAPVGLLRVVKCHTEPKTPPLTGGSISA--------ADNNTGKDNATGGTALSTAEGSGGLVYLSGVRAAARWPGAG--------XXXXXXXXXXRQAADCLEAARTGLEGIGVCLRDVCFVHLYLRDMRLFSAVNEEYCKWFEGENPPSRSCVSVPLPLGCSVMLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGPYCQANTLGPGGGFALVAGQIGLQAASMTFPARRSGRPPVPCAGGATSKEAISERRPIHEQELSLCVSHASSVASAVGASVSRGCVFATLYVSEEAXXXXXXXXXXXXXXVAAHAKAGAMDRTDEEGAVAGEGRGDTRRTSSSDAGTSAGAXAPAGGSGGCLEGMVDECRVLMEGRLSQEQAEAAAEAAGT----EGGEDGDSAEDGWTSDPEELAKEAPRKMV 595
BLAST of mRNA_S-dermatodea_contig12919.1775.1 vs. uniprot
Match: A0A6H5K721_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K721_9PHAE) HSP 1 Score: 220 bits (561), Expect = 8.190e-63 Identity = 144/261 (55.17%), Postives = 159/261 (60.92%), Query Frame = 1
Query: 535 MLDVAALRGSGEALAKEGSACPTRQVLHVRSVSSWAPVCIGPYCQANTLGPGNALALIAGQIGLLPASMVLPPRRPAEEGEGEAGGRGRREVSC-----HGAELELCVSHASVVASAVGSSLSRGCAFATLYVSEEACL------------AAAXXXXTTAEAGNAVHNATRPVRH------------APPSSW----MQSMVDECRELIEEGFEREQAEAIAEAAGTGTGGAAGDEGDSAEEGWTSDPEELAKEAARKKV 1218
MLD+ ALRGSGEALAKEG+AC RQVLHVRS+SSWAPVCIGPYCQANTLGPG AL+AGQIGL ASM P RR AGG +E H EL LCVSHAS VASAVG+S+SRGC FATLYVSEEA A A T E G R A P+ ++ MVDECR L+E +EQAEA AE AGT GG ++ DSAE+GWTSDPEELAKEAARK V
Sbjct: 1 MLDLVALRGSGEALAKEGAACAQRQVLHVRSISSWAPVCIGPYCQANTLGPGGGFALVAGQIGLQAASMTFPARRSGRPPAPCAGGSASKEAMSETRPIHEQELSLCVSHASSVASAVGASVSRGCVFATLYVSEEAXXXXXXXXTAAVAHATAGVMDRTDEEGGVAGEGRGDTRRPSSSDAGTSAGAAAPAGGSGGSLEGMVDECRVLMEGKLTQEQAEAAAEVAGTEGGG---EDDDSAEDGWTSDPEELAKEAARKMV 258
BLAST of mRNA_S-dermatodea_contig12919.1775.1 vs. uniprot
Match: A0A835YTU4_9STRA (Diphthine--ammonia ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTU4_9STRA) HSP 1 Score: 144 bits (362), Expect = 6.200e-34 Identity = 138/312 (44.23%), Postives = 157/312 (50.32%), Query Frame = 1
Query: 1 VLDETMVVNHSDDAFAPVALLRVIACHTEPKHLDTDGGRASSNTTPAATGTDXXXXXXXXXXXXXXTAHEGSGGLVYLSGAVTSAASAASSADADXXXXXXXXXXXXXSRQAAGCLAAARAALAGLGVSLRDVCFVHLYLRDMGHFAAVNEEYCQWFE--GENPPSRSCIAAPLPEGCWIMLDVAALRGSGEALAKEGSACPTRQVLHVRSVSSWAPVCIGPYCQANTLGPGNALALIAGQIGLLPASMVLPPRRPAEEGEGEAGGRGRREVSCHGAELELCVSHASVVASAVGSSLSRGCAFATLYVSEEA 930
VLDET VV HSDD FAPVALLRV+ C T K + R A+ G S G +++S S S+ A XXXXXXXXXXXXX A A+LA DV FVHLYL DM HFAAVN Y FE PPSR+C+ A LP +MLD A RGS A G A R L VRS+S WAPVCIGPY QAN L AL L++GQIGLLP SM + P G G EL CV HA+ V A+G+S SR ATLYV+ A
Sbjct: 173 VLDETEVVMHSDDMFAPVALLRVVRCSTADKMAEE---RERDAQAMASIGHPDLRAAAELEQLLAD-----SSGHIHVSSITCPPDSLPSATSAGXXXXXXXXXXXXXXXXXXXXXXAHDASLA-------DVVFVHLYLADMAHFAAVNAAYAAAFEPAAAAPPSRACVQARLPPPYAVMLDCVAQRGS--APRPRGPA-QDRATLLVRSLSPWAPVCIGPYSQANCLVGSGALVLLSGQIGLLPCSMAVAP--------GGLDG-----------ELGWCVRHAARVLRALGASASRSVLCATLYVTASA 447
BLAST of mRNA_S-dermatodea_contig12919.1775.1 vs. uniprot
Match: K8YYW5_NANGC (Diphthine--ammonia ligase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YYW5_NANGC) HSP 1 Score: 135 bits (339), Expect = 9.270e-31 Identity = 111/296 (37.50%), Postives = 136/296 (45.95%), Query Frame = 1
Query: 1 VLDETMVVNHSDDAFAPVALLRVIACHTEPKHLDT---------------------------DGGRASSNTTPAATGTDXXXXXXXXXXXXXXTAHEGSGGLVYLSGAVTSAASAASSADADXXXXXXXXXXXXXSRQAAGCLAAARAALAGLGVSLRDVCFVHLYLRDMGHFAAVNEEYCQW-FEGENPPSRSCIAAPLP------EGC--W----IMLDVAALRGSGEALAKEGSACPTRQVLHVRSVSSWAPVCIGPYCQANTLGPGNALALIAGQIGLLPASMVLPPRRPAE 768
VLD+T VV HSDD + PV LL + CH E K + DGG ++S + + H V+ G V + + + Q CL + L G+SL DV VHLYLR M FAAVN EYC+ F +PPSRSC+ PL E C W ++LDV AL GSG A+ GS P RQVLHV+S+S WAPVCIGPY QAN L G+ LA +AGQIGL PA+MVL R E
Sbjct: 148 VLDDTEVVIHSDDVYTPVGLLHIHRCHAEFKEESSPTETSKGNEPNRCLVLPLEVAIVRSLADGGPSTSAESLGSQACAVAPGKRARKWRIRPQPH------VWRQGRVLNISGYCVPTPRVHFQGADSSTHGEAAGQMRLCLEGVQRVLLEHGLSLHDVVVVHLYLRSMASFAAVNAEYCRAPFHPHHPPSRSCVELPLARPYDDEEACRGWEEVEVLLDVMALAGSGAAM-DAGSFQP-RQVLHVKSLSGWAPVCIGPYSQANLLSHGH-LAFLAGQIGLDPATMVLVKPRDLE 434
BLAST of mRNA_S-dermatodea_contig12919.1775.1 vs. uniprot
Match: K3WAR1_GLOUD (Diphthine--ammonia ligase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAR1_GLOUD) HSP 1 Score: 126 bits (317), Expect = 4.950e-28 Identity = 94/266 (35.34%), Postives = 131/266 (49.25%), Query Frame = 1
Query: 1 VLDETMVVNHSDDAFAPVALLRVIACHTEPKHLDTDGGRAS----SNTTP------------AATGTDXXXXXXXXXXXXXXTAHEGSGGLVYLSGAVTSAASAASSADADXXXXXXXXXXXXXSRQAAGCLAAARAALAGLGVSLRDVCFVHLYLRDMGHFAAVNEEYCQWFEGENPPSRSCI-AAPLPEGCWIMLDVAALRGSGEALAKEGSACPTRQVLHVRSVSSWAPVCIGPYCQANTLGPGNALALIAGQIGLLPASMVL 747
V+D + VV HSDD FAPVA L + CH E K + A S+ P + T + AH L +LSG + S SA+ + + + A+ LA ++L DVCFVHLY++DM F +N EYC++F PPSRSC+ LP +++D +RGSGE+ ++ S TR VLHV+S+S+WAP CIGPY QAN L +L L+AGQ+ LP +M +
Sbjct: 223 VIDSSRVVLHSDDYFAPVAFLVIEKCHLEDKEPASPSKLAPRLPISSFVPDLTRSVQEKLQKSGTTSAIALAQTTQADRAFLPAHHQFRNLFHLSGFMCSN-SASLTLEQEIKEIFDH----------------AKDTLAKESMTLEDVCFVHLYVQDMNQFGQINAEYCKYFGAHMPPSRSCVEVGSLPAR--VLMDCIGIRGSGESKLRQSSRV-TRDVLHVKSISTWAPNCIGPYSQANILH--KSLILLAGQVSFLPQTMEI 466
BLAST of mRNA_S-dermatodea_contig12919.1775.1 vs. uniprot
Match: A0A2D4CLW4_PYTIN (Diphthine--ammonia ligase n=3 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CLW4_PYTIN) HSP 1 Score: 124 bits (311), Expect = 4.090e-27 Identity = 100/272 (36.76%), Postives = 130/272 (47.79%), Query Frame = 1
Query: 1 VLDETMVVNHSDDAFAPVALLRVIACHTEPKHLDTDGGRASSNTTP----AATGTDXXXXXXXXXXXXXXTAHEGSGGLV----------YLSGAVTSAASAASSADADXXXXXXXXXXXXXSRQAAGCLAAARAALAGLGVSLRDVCFVHLYLRDMGHFAAVNEEYCQWFEGENPPSRSCI-AAPLPEGCWIMLDVAALRGSGEALAKEGSACPTRQVLHVRSVSSWAPVCIGPYCQANTLGPGNALALIAGQIGLLPASMVLPPRRPAEE 771
V+D + VV HSDD FAPVA L V CH E K + TP A+T D A + +V Y+SG + A ++ S + A L+ +++ DVCFVHL++RDM FA +N YC+ PPSRSC+ A LP ++LD ALRGSG+A K R VLHV+S+S+WAP CIGPY QAN L AL L+AGQI LLP +M L + P E+
Sbjct: 223 VVDASHVVMHSDDLFAPVAFLVVDQCHLEDKDAVDPALLHRALPTPFVPSASTTIDRDTVPRTTAIALQTAATDCPQSIVPALASFRDQFYVSGLLCPACASLS-----------------LEEEMDDVFAQLERLLSEQHMTMEDVCFVHLFVRDMREFARLNAAYCRHVGQFMPPSRSCVEVASLPTR--VLLDCFALRGSGDA--KRAQPRVQRDVLHVQSISAWAPNCIGPYSQANVLH--KALILLAGQIALLPETMTLVGQSPDEQ 471
BLAST of mRNA_S-dermatodea_contig12919.1775.1 vs. uniprot
Match: A0A5D6XTH2_9STRA (Diphthine--ammonia ligase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTH2_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.630e-26 Identity = 108/326 (33.13%), Postives = 150/326 (46.01%), Query Frame = 1
Query: 1 VLDETMVVNHSDDAFAPVALLRVIACHTEPKHLDTDGGRAS---SNTTPAATGTDXXXXXXXXXXXXXXTA--------------HEGSGGLVYLSGAVTSAASAASSADADXXXXXXXXXXXXXSRQAAGCLAAARAALAGLGVSLRDVCFVHLYLRDMGHFAAVNEEYCQWFEGENPPSRSCI-AAPLPEGCWIMLDVAALRGSGEALAKEGSACPTRQVLHVRSVSSWAPVCIGPYCQANTLGPGNALALIAGQIGLLPASMVLPPRRPAEEGEGEAGGRGRREVSCHGAELELCVSHASVVASAVGSSLSRGCAFATLYVSE 924
V+D + VV HSDD FAPVA L + CH E K + AS S P + A H + +LSG V SA SA + + RAAL ++L DVCFVHLY+RDM FA +N+EYC++F PPSRSC+ + LP ++LD +RGSG++ K ++ R VLH+ S+S+WAP CIGPY QAN L +L L+AGQ+ LP +M + + H A+ +C +A V A+ S+L C+ A +Y +E
Sbjct: 179 VIDSSRVVLHSDDFFAPVAFLVIEECHLEEKEPASPSQLASRLLSTDHPDRFQLNADTVSEDAIAVQPANALATLAPDDRAFLPHHSQFRNIFHLSG-VMSARSATLTLKEEMNDVFDHV----------------RAALEKESMTLEDVCFVHLYVRDMHSFAQINDEYCRFFSLRMPPSRSCVEVSALPAR--VLLDCVGVRGSGKS--KLLASRVVRDVLHITSISAWAPNCIGPYSQANILH--KSLILLAGQVAFLPQTMEIIG-------------------ADHAAQARVCYRNAGRVLEALDSNLRHVCS-AVVYATE 461
BLAST of mRNA_S-dermatodea_contig12919.1775.1 vs. uniprot
Match: A0A482RIY3_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RIY3_9ARCH) HSP 1 Score: 112 bits (280), Expect = 6.370e-26 Identity = 68/136 (50.00%), Postives = 81/136 (59.56%), Query Frame = 1
Query: 388 LRDVCFVHLYLRDMGHFAAVNEEYCQWFEGENPPSRSCI-------AAPLPEGC-------WIMLDVAALRGSGEALAKEGSACPTRQVLHVRSVSSWAPVCIGPYCQANTLGPGNALALIAGQIGLLPASMVLPP 753
L D FV LYL DM HF AVNE YCQ+F G PPSR+C+ + PL G W+ +A S EA+ + RQ LHV+S+S WAP+CIGPYCQAN + +AL LIAGQIGL PA MVL P
Sbjct: 3 LADAVFVSLYLADMSHFGAVNEAYCQYF-GAQPPSRACVQCTPTPLSTPLSAGSDCERPVVWVSAVIAP--HSYEAMQR--GVHGVRQSLHVQSISHWAPLCIGPYCQANVVR--DALVLIAGQIGLRPADMVLWP 131
BLAST of mRNA_S-dermatodea_contig12919.1775.1 vs. uniprot
Match: A0A0D2LNF7_9CHLO (ATP-binding domain-containing protein 4 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LNF7_9CHLO) HSP 1 Score: 120 bits (300), Expect = 9.550e-26 Identity = 70/149 (46.98%), Postives = 86/149 (57.72%), Query Frame = 1
Query: 346 LAAARAALAGLGVSLRDVCFVHLYLRDMGHFAAVNEEYCQWFEGENPPSRSCIAAPLPEGCWIMLDVAALRGSGEALAKEGS-----ACPT--RQVLHVRSVSSWAPVCIGPYCQANTLGPGNALALIAGQIGLLPASMVLPPRRPAEE 771
L A A L GLG++ D FVHLYL DM HFAA N YC+ +PPSR+C+ PLP G + +DV R +G G A P R+VLHV+S+S WAP CIGPY QA + G L +AGQI L PASM + P PA +
Sbjct: 190 LGAIGARLPGLGLTWDDALFVHLYLSDMAHFAAANAAYCRHLPALSPPSRACVQLPLPGGAPLAVDVLFSRRAGADAPAAGGVRGRGAAPAAPRRVLHVQSISEWAPSCIGPYSQATSSG---GLIHLAGQIPLDPASMAVAPGGPAAQ 335
BLAST of mRNA_S-dermatodea_contig12919.1775.1 vs. uniprot
Match: A0A6A3YVN2_9STRA (Diphthine--ammonia ligase n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YVN2_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.060e-25 Identity = 97/266 (36.47%), Postives = 125/266 (46.99%), Query Frame = 1
Query: 1 VLDETMVVNHSDDAFAPVALLRVIACHTEPKHLDTDGGRAS-----SNTTPAATGTDXXXXXXXXXXXXXXTAHEGSGGL------VYLSGAVTSAASAASSADADXXXXXXXXXXXXXSRQAAGCLAAARAALAGLGVSLRDVCFVHLYLRDMGHFAAVNEEYCQWFEGENPPSRSCIA----APLPEGCWIMLDVAALRGSGEALAKEGSACPTRQVLHVRSVSSWAPVCIGPYCQANTLGPGNALALIAGQIGLLPASMVLPP 753
V+DE+ V HSDD APVA L + CH E K AS S+ PA + T A ++LSG ++S A AS + A +A A L + L DVCFVHLY++DM F +N EY ++ PPSRSC+ A +P ++LD ALRGSG+ + R VLHV+S+S+WAP CIGPY QAN L AL L+AGQI L P +M L P
Sbjct: 223 VIDESHTVLHSDDYVAPVAFLSIDKCHLEDKEPSDPSHLASRIPETSSVQPATSSTTMEAKAATVLALAPQPAKHVLPAFGRFRDQLHLSGVMSSKAGDAS---------------ISLQEEMADVVAQVEAILKSEDMVLADVCFVHLYVQDMATFGELNAEYIRYLGQNLPPSRSCVELKALADVPAR--VLLDCYALRGSGKHKLQRLRV--RRDVLHVKSISAWAPCCIGPYSQANVLH--RALILLAGQIALHPQTMNLVP 467 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12919.1775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12919.1775.1 >prot_S-dermatodea_contig12919.1775.1 ID=prot_S-dermatodea_contig12919.1775.1|Name=mRNA_S-dermatodea_contig12919.1775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=401bp MVVNHSDDAFAPVALLRVIACHTEPKHLDTDGGRASSNTTPAATGTDTGTback to top mRNA from alignment at S-dermatodea_contig12919:78..5753+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12919.1775.1 ID=mRNA_S-dermatodea_contig12919.1775.1|Name=mRNA_S-dermatodea_contig12919.1775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5676bp|location=Sequence derived from alignment at S-dermatodea_contig12919:78..5753+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12919:78..5753+ >mRNA_S-dermatodea_contig12919.1775.1 ID=mRNA_S-dermatodea_contig12919.1775.1|Name=mRNA_S-dermatodea_contig12919.1775.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2406bp|location=Sequence derived from alignment at S-dermatodea_contig12919:78..5753+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |