mRNA_S-dermatodea_contig12916.1774.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12916.1774.1
Unique NamemRNA_S-dermatodea_contig12916.1774.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12916.1774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12916contigS-dermatodea_contig12916:6332..6818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924267.2731566-CDS-S-dermatodea_contig12916:6332..64171622924267.2731566-CDS-S-dermatodea_contig12916:6332..6417Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12916 6333..6417 -
1694079137.5663605-CDS-S-dermatodea_contig12916:6332..64171694079137.5663605-CDS-S-dermatodea_contig12916:6332..6417Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12916 6333..6417 -
1622924267.2878637-CDS-S-dermatodea_contig12916:6699..68181622924267.2878637-CDS-S-dermatodea_contig12916:6699..6818Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12916 6700..6818 -
1694079137.5800478-CDS-S-dermatodea_contig12916:6699..68181694079137.5800478-CDS-S-dermatodea_contig12916:6699..6818Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12916 6700..6818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12916.1774.1prot_S-dermatodea_contig12916.1774.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12916 6333..6818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12916.1774.1

>prot_S-dermatodea_contig12916.1774.1 ID=prot_S-dermatodea_contig12916.1774.1|Name=mRNA_S-dermatodea_contig12916.1774.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=68bp
SVISWGKGKFLANGVPCPPGNICFGARPPGEGLENIIQTMAMRDQIWWRK
SGAIHPLVAAKVVRATLG
back to top

mRNA from alignment at S-dermatodea_contig12916:6332..6818-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12916.1774.1 ID=mRNA_S-dermatodea_contig12916.1774.1|Name=mRNA_S-dermatodea_contig12916.1774.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=487bp|location=Sequence derived from alignment at S-dermatodea_contig12916:6332..6818- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAGTGATTAGTTGGGGGAAAGGAAAATTCCTTGCGAACGGAGTGCCGTG
TCCTCCAGGTAACATCTGTTTCGGCGCGCGGCCACCGGGCGAAGGATTGG
AGAACATCATCCAGACCATGTGAGCGAGCGGGGGCGAGAGTGGCAAGAAC
GATGATAATGAAAAAGAGCAGCTGGGTATCATCCTTGTGAAACGCAGCTG
GCCGGCGAAGTCCCGGCATGCCGCACCGTCCCGGCATTGTTGGGATGCGT
GGTCTATTATGTCCGTTTGGATGCGACATGCGATTAACATGAGTACCCCC
CACCTCCCCCAACCCCACGCGTGCCTCCTCCGCGCCCTGACGCCGCCGCC
CACCAACGACACAACTCTGTTTCGCCTCGCGAAAATAATCAAATCGCCCA
GGGCGATGCGAGACCAAATCTGGTGGCGGAAGTCGGGAGCGATCCACCCA
CTCGTCGCGGCCAAAGTAGTGAGAGCAACGCTCGGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12916:6332..6818-

>mRNA_S-dermatodea_contig12916.1774.1 ID=mRNA_S-dermatodea_contig12916.1774.1|Name=mRNA_S-dermatodea_contig12916.1774.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at S-dermatodea_contig12916:6332..6818- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAGTGATTAGTTGGGGGAAAGGAAAATTCCTTGCGAACGGAGTGCCGTG
TCCTCCAGGTAACATCTGTTTCGGCGCGCGGCCACCGGGCGAAGGATTGG
AGAACATCATCCAGACCATTCAGTGATTAGTTGGGGGAAAGGAAAATTCC
TTGCGAACGGAGTGCCGTGTCCTCCAGGTAACATCTGTTTCGGCGCGCGG
CCACCGGGCGAAGGATTGGAGAACATCATCCAGACCATGGCGATGCGAGA
CCAAATCTGGTGGCGGAAGTCGGGAGCGATCCACCCACTCGTCGCGGCCA
AAGTAGTGAGAGCAACGCTCGGGGGCGATGCGAGACCAAATCTGGTGGCG
GAAGTCGGGAGCGATCCACCCACTCGTCGCGGCCAAAGTAGTGAGAGCAA
CGCTCGGG
back to top