mRNA_S-dermatodea_contig12903.1768.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12903.1768.1
Unique NamemRNA_S-dermatodea_contig12903.1768.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: D7G6A4_ECTSI (Rad51 DNA recombinase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A4_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 2.350e-88
Identity = 156/205 (76.10%), Postives = 175/205 (85.37%), Query Frame = 1
Query:    1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAG-LARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDTINRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASA--HGSRQSIASHTNSSSRAADSAFETEV 606
            QGGFPTGMITELVGPAGIGKTQ CL +AAQA LPA  GGLGED+GVVYLDTERKFS DRL+EIAS R P  YG+ ++  G + RLL+QVTV+ +D S+AL++RLE+LQA +IE NVRLIVLDS+AALARRDFAREDT++RQE+LTRQAAVLKSLAYTFS VVLVTNQVTTSF P S    GSRQSIASHTNSSSR   SAFETE 
Sbjct:   97 QGGFPTGMITELVGPAGIGKTQTCLQVAAQACLPAKLGGLGEDAGVVYLDTERKFSPDRLVEIASERHPGHYGEFSTEKGSMERLLNQVTVFPVDNSAALVDRLETLQARMIESNVRLIVLDSIAALARRDFAREDTLSRQELLTRQAAVLKSLAYTFSAVVLVTNQVTTSFYPTSGLQGGSRQSIASHTNSSSREGKSAFETET 301          
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: A0A8B7YX30_ACAPL (DNA repair protein RAD51 homolog 2-like isoform X1 n=5 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YX30_ACAPL)

HSP 1 Score: 182 bits (461), Expect = 4.160e-49
Identity = 120/278 (43.17%), Postives = 164/278 (58.99%), Query Frame = 1
Query:    1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYG-DEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDF---AREDTINRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRAADSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIMEQ-HEGYREMHLTKSPLAPRVSCRFIVQDTGLEEVRV*LSDQYDS 819
             GG P G I+E+ GP G GKTQ C+M++  A LPA+ GGL  D  V Y+DTE  FS +RL+E+A  RFP  +  DEA  A    L  ++ VY   T  +LL RL++L+  +I   +RLIVLDSVA+L R++F    R + I R  +L++QAA+LK LA  FS+ V+VTNQ+TT     + H + Q       +    ADS        G GGSY++ ALGNTW H V+ RLI++   E  RE+   KSP+AP +S  + +QD G+      L D  DS
Sbjct:  123 HGGLPAGTISEIAGPPGCGKTQFCIMLSVLATLPAAMGGL--DGAVAYIDTESAFSAERLVEVARCRFPVHFSCDEAYIA----LTSRIHVYQESTCCSLLARLQNLEEDLITKGIRLIVLDSVASLVRKEFDSSLRGNLIERTNLLSKQAAILKYLAEAFSIPVVVTNQITTRLR--AQHSACQGSTDEAGTLDGGADS--------GVGGSYVMAALGNTWSHNVNTRLILQYLDETRREVLTAKSPIAPFISLVYTIQDRGIV-----LEDSTDS 379          
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: UPI000D739116 (DNA repair protein RAD51 homolog 2-like isoform X1 n=3 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D739116)

HSP 1 Score: 176 bits (447), Expect = 2.810e-47
Identity = 109/263 (41.44%), Postives = 158/263 (60.08%), Query Frame = 1
Query:    1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFA--REDTINRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRAADSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIME-QHEGYREMHLTKSPLAPRVSCRFIVQDTGL 780
             GGFP+G ITE+ GP+G GKTQ CL +A  A LP S+GG G    V+++DTE  FS +RL+EIA  R P+ + D+ S   L +L+  V +  I T   L+ RL++L+  +I  NVRL+++DSVA+L R++F   ++  + R + LT +A +LK +A TFS+ V+VTNQ+TT F    A  S  S      S           E+ G    +Y+  ALGNTW HCV+ RLI++   E  R+M + KSP+AP      I++D G+
Sbjct:   93 HGGFPSGTITEIAGPSGCGKTQFCLTLAVLATLPVSNGGCG--GTVLFIDTEGAFSAERLVEIARCRLPELFKDDDS---LHQLVSNVYIDLIQTCKNLMNRLKNLEEDLISKNVRLLIVDSVASLVRKEFGSLQDGMMRRTDFLTAEAGLLKHIAETFSIPVVVTNQITTRFGITHAQSSDSSSYDKLESGDGKKTLGSSVEMDGED--TYMTAALGNTWSHCVNTRLILQFLPERRRQMLVAKSPVAPFTCFDIIIKDEGV 348          
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: UPI00148A29DC (DNA repair protein RAD51 homolog 2 isoform X2 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A29DC)

HSP 1 Score: 174 bits (442), Expect = 9.260e-47
Identity = 105/264 (39.77%), Postives = 157/264 (59.47%), Query Frame = 1
Query:    1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDF---AREDTINRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRAADSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIMEQHEGY-REMHLTKSPLAPRVSCRFIVQDTGL 780
             GG P G +TE+ GP+G GKTQ C M++ QA LP + GGL  +  V+Y+DTE  FS +RL+EIA  +FPD Y  E     L R+ + V V    T ++L+++LESL+  +I   +RL+++DS+A+L R++F   A  + + R   L+RQAA+LK +A  F + V+VTNQ+TT F        RQ+            D    TE+S G    Y+  ALGNTW H V+ RLI++  +G  R++ + KSP+AP  +  + +Q  G+
Sbjct:   95 HGGIPMGTVTEIAGPSGCGKTQFCTMLSVQATLPGNRGGL--EGKVLYMDTESAFSAERLVEIAQHKFPDLYNSEED---LCRMAENVLVDNHQTCASLIKKLESLEEEVITHRIRLVIVDSIASLVRKEFSSSAGSNLVQRTNFLSRQAALLKYIAEVFCIPVIVTNQITTRFG-------RQATEQ---------DEEETTEISDG----YVTVALGNTWSHNVNTRLILQYLDGEKRQVLVAKSPVAPFTAFNYTIQRDGI 333          
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: A0A1S3JDA9_LINUN (DNA repair protein RAD51 homolog 2 isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JDA9_LINUN)

HSP 1 Score: 173 bits (438), Expect = 1.430e-46
Identity = 110/268 (41.04%), Postives = 154/268 (57.46%), Query Frame = 1
Query:    1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDTIN---RQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSF----SPASAHGSRQSIASHTNSSSRAADSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIMEQ-HEGYREMHLTKSPLAPRVSCRFIVQDTGL 780
             GG P G ITE+ GPAG GKTQ  +M++  A +P   GGLG    VVY+DTE  FS +RL+E+A  RFP  +  E S   L +L  +V VY   TSS LL+RL++L+  IIE  V+LI+LDSVA+L R++F    + N   R  +L ++AA+LK LA +F + V+VTNQ+TT F    S         S+ S  N                     Y+  ALGNTW H V+ RLI++   + YR++ + KSP+AP  +  + +QD G+
Sbjct:   53 HGGIPLGTITEIAGPAGCGKTQFSIMLSVLATVPVEMGGLG--GAVVYIDTESAFSAERLVEVAQNRFPGHFISEES---LLQLTSRVHVYHESTSSQLLKRLQTLEEDIIEKKVKLIILDSVASLVRKEFDSRTSQNLYERTNLLAKEAAILKYLAESFYIPVVVTNQITTRFGFNLSEVDVMEKEDSVTSSENG--------------------YVTAALGNTWSHSVNTRLIIQYLDDRYRQILIAKSPVAPFAAHEYDIQDKGI 295          
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: A0A2L2YLV0_PARTP (DNA repair protein RAD51-like protein n=3 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YLV0_PARTP)

HSP 1 Score: 174 bits (442), Expect = 2.320e-46
Identity = 107/290 (36.90%), Postives = 163/290 (56.21%), Query Frame = 1
Query:    1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDT---INRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRA-------ADSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIME-QHEGYREMHLTKSPLAPRVSCRFIVQDTGLEEVRV*LSDQYDSVGSSTP 837
            QGG P G ITE  GP G+GKTQ C M++  +VLP+S+GGL   S V+Y+DTE  FS DR+  +A  +FP  Y D+ +   LA LL  + VY      AL E + +L+  +I   V++I++DS+A+L R++F  E     I R  +L  QAA+LK+LA  + +V+ +TNQ+T+    A        IA    + S A         S  + ++ GG    +++PALGNTW HCV+ RL+ +      R++ + KSP+AP  + RF + ++G+    V   D  + +  S P
Sbjct:   95 QGGLPFGCITEFAGPPGVGKTQFCFMLSILSVLPSSAGGLS--SKVIYIDTESAFSADRIKTMAQKKFPHLYKDDQN---LANLLQSIMVYKASCIDALKEIIPNLEREVIRNKVKVIIIDSIASLVRKEFGGEQLGSLIQRNNILMEQAALLKNLAQAYDIVIFLTNQITSHI--AELESVAMDIAEEDENISSAYVGVPPPVCSEKKVKLHGGNA-DHVVPALGNTWSHCVNTRLVAQFLDSSVRQLIIAKSPVAPNAAVRFFINESGI----VLTGDDIEFINMSDP 372          
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: A0A8J1U3G7_OWEFU (Ofus.G093117 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U3G7_OWEFU)

HSP 1 Score: 172 bits (436), Expect = 3.270e-46
Identity = 108/269 (40.15%), Postives = 160/269 (59.48%), Query Frame = 1
Query:    1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDTIN---RQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRAADSAFETEVSG-----GRGGSYIIPALGNTWHHCVSNRLIMEQHEGY-REMHLTKSPLAPRVSCRFIVQDTGL 780
             GG P G ITE+ GP+G GKTQ  +M++  A LP  +GGL  D GV+Y+DTE  FS +RL E+A  RFPD   +E S   + ++  +V VY   T S+L +RL++L+  II   ++LIVLDSVA+L R++F  + T N   R  +L ++AA+LK LA +F + V+VTNQ+TT +                N+S    D   +  V+G     G GG Y+  ALGNTW H V+ RLI++  +   R++ + KSP+AP  +  + ++D G+
Sbjct:   54 HGGLPAGTITEIAGPSGCGKTQFSIMLSLLATLPIQNGGL--DGGVIYIDTESAFSAERLAEMAQCRFPDLINNEES---ILKVATRVHVYLESTCSSLFKRLQNLEEDIISKGIKLIVLDSVASLVRKEFDTKGTKNITQRTNLLAQEAAILKYLAESFKIPVVVTNQITTRYGQG-------------NTSDAGNDVNHDMSVNGMSSLDGDGG-YVTAALGNTWSHSVNTRLIVQYLDNVKRQILIAKSPVAPFAAFTYTIEDKGI 303          
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: UPI00139057E6 (DNA repair protein RAD51 homolog 2 isoform X3 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00139057E6)

HSP 1 Score: 172 bits (437), Expect = 6.420e-46
Identity = 109/265 (41.13%), Postives = 160/265 (60.38%), Query Frame = 1
Query:    1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDTIN---RQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRAADSAFETEVSGGRGGS-YIIPALGNTWHHCVSNRLIME-QHEGYREMHLTKSPLAPRVSCRFIVQDTGL 780
             GG P G ITE+ GPAG GKTQ C+M++  A LP   GGLG  + V+Y+DTE  FS  R++E+A  RFP  + ++ S   +  L +++ V+   T  AL ERL+SL+  +I   V+LIVLDSVA+L R++F  + + N   R  +L+++AA+LK +A TF++ V+VTNQ+T+ F+P S H +   I                 EV     GS ++I ALGNTW H V+ RLI++   E YR++ + KSP+AP     + +Q  GL
Sbjct:   94 HGGLPCGTITEITGPAGCGKTQFCIMLSILATLPQDQGGLG--ANVIYIDTEAAFSATRMVEMAENRFPGLFENQNS---VLSLTEKIHVFWEPTCKALWERLQSLEEEVISRKVKLIVLDSVASLIRKEFDSQSSRNIKERTNLLSKEAAILKYIAETFNIPVVVTNQITSRFAP-SKHVTEADI-----------PDVDGVEVEADEEGSDHVIAALGNTWSHAVNTRLIVQFLDETYRQVMIAKSPIAPFDVFTYSIQIEGL 341          
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: A0A1Y1ICX6_KLENI (Putative DNA repair protein RAD51 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ICX6_KLENI)

HSP 1 Score: 173 bits (438), Expect = 6.680e-46
Identity = 108/264 (40.91%), Postives = 151/264 (57.20%), Query Frame = 1
Query:    1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDTINRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRAA----DSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIMEQHEGYREMHLTKSPLAPRVSCRFIVQDTGL 780
            +GG P G ITELVGPAG+GKTQ CLM++  A LP   GGL  D   VY+DTE KFS  RL+EIA+ R PD + DE +   +  L  +V V   +++  LL RL+ L+  +I    +LIVLDSVAAL R ++  +    RQ++L RQAA+LK LA TF + V+VTNQV      A +         H     R +    DS +++          +  ALG  W H V+ RL++E+H G R + + KSP+AP ++  + +   GL
Sbjct:  104 RGGVPLGSITELVGPAGVGKTQLCLMLSIFATLPTDIGGL--DGKCVYIDTENKFSAKRLIEIATMRLPDSFPDEQA---VQHLTSRVLVLRPNSAIDLLTRLQKLEEAMIREKAKLIVLDSVAALVRSEYGHDQLQQRQDLLGRQAALLKYLAETFRIPVVVTNQVMAQMG-APSQQPNYGFVEHERKKLRPSPGYEDSTYDSST--------VTAALGTKWAHAVNTRLVLERHAGQRYIRIAKSPMAPSLAFPYAIAAGGL 353          
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: A0A0D2X0X1_CAPO3 (RECA_2 domain-containing protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X0X1_CAPO3)

HSP 1 Score: 172 bits (435), Expect = 2.130e-45
Identity = 107/262 (40.84%), Postives = 158/262 (60.31%), Query Frame = 1
Query:    1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDTINRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSP-ASAHGSRQSIASHTNSSSRAADSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIMEQ-HEGYREMHLTKSPLAPRVSCRFIVQDTGL 780
            +GGF    ITELVGP+G GKTQ C+M+A QA LP   GGLG   GVVY+DTE  FS  RL+E+A  R+P  Y +  +   + +L +++ + +  T  +L+ RL++L   I+E   +L++LDSVA+L R+++  +  + R   L+  A+VLK LA +FS+ ++VTNQVTTS S  AS  G+    AS   S+ R  D     E         +  ALGNTW HCV+ RL++E   +  R + + KSP+AP  S  ++++  GL
Sbjct:   96 RGGFAFSTITELVGPSGCGKTQFCMMLAVQASLPLEHGGLG--GGVVYIDTESAFSATRLVEMAVARYPHVYDNAEA---VDKLANRILICSEATCESLMARLDTLDQAIVERGAKLVILDSVASLVRKEYDSKSMVQRTAYLSNVASVLKYLAESFSIPIVVTNQVTTSVSMRASFDGNNYGGAS---SAQRETDGVENVEAQ-------VTAALGNTWSHCVNTRLVVEYVTDELRTVKIAKSPIAPCASFSYVIEPEGL 342          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6A4_ECTSI2.350e-8876.10Rad51 DNA recombinase 2 n=1 Tax=Ectocarpus silicul... [more]
A0A8B7YX30_ACAPL4.160e-4943.17DNA repair protein RAD51 homolog 2-like isoform X1... [more]
UPI000D7391162.810e-4741.44DNA repair protein RAD51 homolog 2-like isoform X1... [more]
UPI00148A29DC9.260e-4739.77DNA repair protein RAD51 homolog 2 isoform X2 n=1 ... [more]
A0A1S3JDA9_LINUN1.430e-4641.04DNA repair protein RAD51 homolog 2 isoform X1 n=2 ... [more]
A0A2L2YLV0_PARTP2.320e-4636.90DNA repair protein RAD51-like protein n=3 Tax=Para... [more]
A0A8J1U3G7_OWEFU3.270e-4640.15Ofus.G093117 protein n=1 Tax=Owenia fusiformis Tax... [more]
UPI00139057E66.420e-4641.13DNA repair protein RAD51 homolog 2 isoform X3 n=1 ... [more]
A0A1Y1ICX6_KLENI6.680e-4640.91Putative DNA repair protein RAD51 n=1 Tax=Klebsorm... [more]
A0A0D2X0X1_CAPO32.130e-4540.84RECA_2 domain-containing protein n=2 Tax=Capsaspor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12903contigS-dermatodea_contig12903:119..4218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score263.1
Seed ortholog evalue1.4e-67
Seed eggNOG ortholog2880.D7G6A4
Preferred nameRAD51B
KEGG koko:K10869
KEGG Pathwayko03440,map03440
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0001701,GO:0001824,GO:0001832,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0007346,GO:0007596,GO:0007599,GO:0008094,GO:0008150,GO:0008152,GO:0008284,GO:0009314,GO:0009611,GO:0009628,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010212,GO:0010389,GO:0010564,GO:0010971,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0040007,GO:0042060,GO:0042127,GO:0042148,GO:0042623,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045003,GO:0045787,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048522,GO:0048589,GO:0048856,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051321,GO:0051716,GO:0051726,GO:0060429,GO:0061053,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0090068,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902749,GO:1902751,GO:1903046
EggNOG free text desc.recombinase activity
EggNOG OGsCOG0468@1,KOG1433@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRad51 DNA recombinase 2
Ec32 orthologEc-10_001130.4
Exons6
Model size1364
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12903.1768.1prot_S-dermatodea_contig12903.1768.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12903 140..3652 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924266.86908-UTR-S-dermatodea_contig12903:118..1391622924266.86908-UTR-S-dermatodea_contig12903:118..139Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12903 119..139 +
1694079137.2330627-UTR-S-dermatodea_contig12903:118..1391694079137.2330627-UTR-S-dermatodea_contig12903:118..139Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12903 119..139 +
1622924266.9497032-UTR-S-dermatodea_contig12903:3652..42181622924266.9497032-UTR-S-dermatodea_contig12903:3652..4218Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12903 3653..4218 +
1694079137.3066635-UTR-S-dermatodea_contig12903:3652..42181694079137.3066635-UTR-S-dermatodea_contig12903:3652..4218Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12903 3653..4218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924266.8815062-CDS-S-dermatodea_contig12903:139..2801622924266.8815062-CDS-S-dermatodea_contig12903:139..280Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12903 140..280 +
1694079137.2453067-CDS-S-dermatodea_contig12903:139..2801694079137.2453067-CDS-S-dermatodea_contig12903:139..280Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12903 140..280 +
1622924266.8945308-CDS-S-dermatodea_contig12903:555..6541622924266.8945308-CDS-S-dermatodea_contig12903:555..654Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12903 556..654 +
1694079137.2642183-CDS-S-dermatodea_contig12903:555..6541694079137.2642183-CDS-S-dermatodea_contig12903:555..654Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12903 556..654 +
1622924266.9081588-CDS-S-dermatodea_contig12903:1782..19081622924266.9081588-CDS-S-dermatodea_contig12903:1782..1908Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12903 1783..1908 +
1694079137.2738647-CDS-S-dermatodea_contig12903:1782..19081694079137.2738647-CDS-S-dermatodea_contig12903:1782..1908Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12903 1783..1908 +
1622924266.9191806-CDS-S-dermatodea_contig12903:2177..22421622924266.9191806-CDS-S-dermatodea_contig12903:2177..2242Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12903 2178..2242 +
1694079137.281578-CDS-S-dermatodea_contig12903:2177..22421694079137.281578-CDS-S-dermatodea_contig12903:2177..2242Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12903 2178..2242 +
1622924266.9300032-CDS-S-dermatodea_contig12903:2595..28211622924266.9300032-CDS-S-dermatodea_contig12903:2595..2821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12903 2596..2821 +
1694079137.2907922-CDS-S-dermatodea_contig12903:2595..28211694079137.2907922-CDS-S-dermatodea_contig12903:2595..2821Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12903 2596..2821 +
1622924266.9420402-CDS-S-dermatodea_contig12903:3532..36521622924266.9420402-CDS-S-dermatodea_contig12903:3532..3652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12903 3533..3652 +
1694079137.2986476-CDS-S-dermatodea_contig12903:3532..36521694079137.2986476-CDS-S-dermatodea_contig12903:3532..3652Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12903 3533..3652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12903.1768.1

>prot_S-dermatodea_contig12903.1768.1 ID=prot_S-dermatodea_contig12903.1768.1|Name=mRNA_S-dermatodea_contig12903.1768.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=259bp
MITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSV
DRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQ
AHIIEGNVRLIVLDSVAALARRDFAREDTINRQEVLTRQAAVLKSLAYTF
SVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRAADSAFETEVSGGRG
GSYIIPALGNTWHHCVSNRLIMEQHEGYREMHLTKSPLAPRVSCRFIVQD
TGLEEVRV*
back to top

mRNA from alignment at S-dermatodea_contig12903:119..4218+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12903.1768.1 ID=mRNA_S-dermatodea_contig12903.1768.1|Name=mRNA_S-dermatodea_contig12903.1768.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4100bp|location=Sequence derived from alignment at S-dermatodea_contig12903:119..4218+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGCGGATTTCCAACAGGCATGATCACGGAGCTAGTTGGACCAGCAGG GATCGGCAAGACCCAGGCGTGCCTCATGATGGCAGCACAAGCGGTTCTCC CCGCTAGCTCGGGGGGGTTGGGCGAGGACTCGGGAGTGGTATACTTGGAC ACTGAGCGCAAGGTATCGTAGCAACTCGCCGTGTGGTAAGTAAAATATGG CTCTTATGGCTCGTCTCGTCTGCAATTTTCATTCGCCCAGCTGCCGAAAT GAGCTTACATTGAAGTTCAGCGTTTCCGTAACTCTATGATAGACACACAC GATACATGGTGCCAACGGTGCATTCTTAGACTGCAGGGGCGTGGTTCCTC TTCTTGGCCATGAATGATAATATTGCACACACTGAAAACTGAAAACTATC TCTGGTTTTTCCATCAACCTGCGGGCAAACGCTGCAGTTCAGCGTGGATC GACTGATGGAAATCGCGAGTACACGATTCCCGGATCGCTACGGAGACGAA GCGTCTCCAGCCGGCCTGGCGCGATTGCTGGATCAGGTATGCCTTGAATA GAGCTGAATTAGCACAAGTAATCCTATAACGGGTGCGCCCCTCCGGTAAC CAAGCAATTAGTATTCTTAATATTCAGGGGTTCCGGTGCCAAACCAGAGC GCCTCGGTATTGCCGTCAACAAGCATTTTCGGCCAATCAGAATCCTCCCT TAGCGCTTTCGGGACTAAGCTCGTTTTTCGTCGTAAATGGTCACGCTACT TGCACAACTGTGGTACGAGCATTGCGGCGAATGCTGTAAGAGAAGCGTCG CACTGCGAGCTGAGCGTGTCACCTGCCACGTTTCACCACCACCACATGCA TGTATACGGCACGGTGAAGGGAAGAGAAGGGCAGCCGCGGTTGGGTCGGG TCGCTATCCTTATTAATTAACCCTTTTGCGACTAGGGCTGTTTTCGGGTA ACTGCTTGCTATTGTGATTTACGGCTTTTGGAACTAAGCCTGGGGACGAA GCCTGTTTTCGGGTAACTGTTGACTACAATAATAGCAAACAGTTACCCGA AAACAGCCTTAGTCCCAAAACAAAAGCGTAATATTAATAGCAAACAGTTA CACGANNNNNNNNNNAAAATAAAAGCTGAATAATAATAGCAAACAGATAC CCGAAAACAGCCTTAGTCCCAAAAGGGTTAATAGCGCTTTGCACTTTTTT TTTATTTAGAATTTAGGTTAGAGGCTTGATGATGCCCAAATCGATAGGGC TTTTAGAGTGGAGCTCTTGATGCCAAGTCGACACTTGTAGGGCTTACGGA GTGGTAGTATTTTGACGCTTTTTCCGATAATACGCCGGTTTGCCCGTTCG CACAACTCACGGGCGTAGCCTATGCATAGCCGTGGCTACCCACTAGTTTG GGATGAAATACTTTTATAGAGCATAGAGTGCGGGCAGATGAACCCGACTA CAGGCTCAGTCCCAAAAGGGTTACAAAAAGATTGACCAATTGGAAAATTT GCGGGCACCTTTTCCCTTTCTCCCAAGCGTCTGCGCTGGATGAACTCCCC TGCTGTTACCGTACGGGGTGGACACGCGTGTTCGATGCTAGCTCTACATG GTGGAACAGTGCCCCAGGCGGTTTACGTTCAATGTTCCTCGCCGTCTCCC CGCCCCCTGTGCAGGTGACTGTTTACACCATCGACACCTCGTCCGCGCTT CTGGAGCGTTTGGAATCGCTCCAGGCCCACATCATCGAGGGAAACGTGCG CCTCATAGTCCTCGACTCGGTCGCGGCTTTGGCGCGCAGGGTGCGTTGCC CGCGTACACGGCATCGCTCTTCGAATTGCGGCAGCGTTGCCCCTCGCCTA ATACTAAGTATTGAACGTATTAGTACGACGAATAGAGCGTACTTGTCGGC AGTGAAAAGAGCTCGAGACCTTTGTTTCGTGGAGGGTTTGGTCCGCCTGG AAGGATGAACTAAATAGATAAAACACACACATAATAGCTCTAGACCGACC GGTCAAACGCTGAAGAGTCTTCCATTTCTTATTTTGTTACGTTTGCGCTC GAAACGCAGGACTTCGCAAGGGAAGATACTATCAACAGACAAGAGGTGCT GACTCGGCAAGCGGCAGTCCTGAAGTGAGGAAGTTTTTTGGGGGTATCGT TTTTCCAAAACAGTGCCTTTCCCATGGAACAACGGGCTATCTACCAAAAC AGCCCGGTACAGAGTGCACTGCTTGAGAGATGGCAACATGGCAACGCGTA CGGTGGATCATGTACAGTGCTCACTTTTTTCAATGGAACATTTATTTGTG TACACCACAACGGCGTTGTTGTGCCTGGTCCCCCAACTGCGCCGAGTCTC GAATGCCACCGCGGCCCCAACGCTCCTCCTATGGTCCGAGGCTAGCCCCC ATCTGCACCACAAACCCTCCCCTCCCGCGCCTTTACACCACCACACCGCA ACGTCCACACGTCCCGCCGTGTAACAGGAGCCTCGCGTACACATTTTCAG TGGTAGTGCTCGTCACGAACCAAGTCACCACCAGTTTTTCCCCCGCGTCG GCTCACGGGAGCCGACAGAGCATCGCCAGCCACACCAACTCCAGCTCAAG AGCGGCGGACTCGGCGTTCGAAACGGAGGTGTCTGGGGGGCGGGGAGGAT CGTATATCATCCCTGCTTTGGGAAACACATGGCATCACTGCGTGTCGAAC AGGGTGGGTCGTTGGCGTTCGTTCCAGTGTTCGGAAATAAAAACAATTAC ACGATTGTCGCCTCATGTGCCCCCCCTATTTACTGGCGTTACACTTCGGA TACCCAATCAAGTGCAAATAACCTGCGGGTACGTGGGGGTATTCAGTTGG CCCGGGGTTTTCCTTTCGCGCCGCACCTACGCGGCAGACCATCGCTCTGT TGTTGTTCCCGCCTTGCCCGCTTCTTGAGGCTCCCCCTCTGTTTCCGAGA TTTTGTGTAAATCCCTTCTTTGTATGTAGGTAACTCCGTGGGTTTTATTT TCGACCTCTCGATTTCTCATCTGACCCACGAGCAAGCGAGATCGGCAACC ATAACCATCACTATTATGGGGGGCCGGTTACATCGGTTGTAATTGTGATA ATCAACTCAATTAACCAAGACATCAATTAGCTGAAATTTTTGTGTGAACT TGTTCATGGCGACTGCGTCGTTGTTGTGTTGCCTGTACTGTACATGCGGC GGCCATTCACCTACGCTCAAGGTGTACCACCGTTCCGAAACACTGTTTCG CGAAAGGCAGCGCTCCTTGGGGGTGGTGTGTGTTGGGACAAAACTCTCCG TGATTTGAGACTTTGTACGATTTTTCGAAGCCGGACTCATTATCCCGAAT CCCGACATTAGTATTTCCGATTTCCGTCGCTGCCGCGCTCTTCCGTTCGT GTTTTGTTTTGCAGCTGATTATGGAGCAACACGAAGGCTATCGGGAGATG CATCTCACCAAGTCACCCTTAGCCCCGAGAGTCTCGTGTCGCTTCATCGT GCAAGACACGGGACTTGAAGAAGTTCGGGTGTGACTCTCAGATCAGTATG ATAGTGTTGGCAGCTCCACTCCTTCGTATTAGTCTGTGCCCCCCTTTCTG TACAATGCGACACGTATGTATTGTATGGTGCTCCCGATCGATGTAGGGCT GATGCAAAAATATTGGAAAAAAAGAAGGTACAAAGACGCTTCCTCCGGCG ACACGCTACCGGTGGTGCCCGAACGTGCGTACGCTTCGAGTACGGCCAGT TGCTGTGAGCGTCGCTCTGTCCGCCAAGGTCATGCCGGCGTACCCTTATC GCATCTGAATGTTTCACACAGAAAATTGAAGTCCACGGAATTCGCTCAAA TTTGGTGTGCTTGTAATAACTGCCGAATGCAAGAAGATTTCTTACTAGGT AAGGTACAGTAAGACTCTAGGAAAGGCGGCAAAAAATCAGAGTTGCGTGA AATGTTGTCACGTCGCCCGTGAGTCCGCTATTTGTACTACATGCTCGGCA TTCGCATGTGTGCGTGCGCCGCCTTGCGAATACGCACACGATCCACCACG CCGTTCACTCGCGAACTTGCGACTTTTTCTTCTCCTAGCTCCGACACTGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12903:119..4218+

>mRNA_S-dermatodea_contig12903.1768.1 ID=mRNA_S-dermatodea_contig12903.1768.1|Name=mRNA_S-dermatodea_contig12903.1768.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at S-dermatodea_contig12903:119..4218+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCACGGAGCTAGTTGGACCAGCAGGGATCGGCAAGACCCAGGCGTG
CCTCATGATGGCAGCACAAGCGGTTCTCCCCGCTAGCTCGGGGGGGTTGG
GCGAGGACTCGGGAGTGGTATACTTGGACACTGAGCGCAAGATGATCACG
GAGCTAGTTGGACCAGCAGGGATCGGCAAGACCCAGGCGTGCCTCATGAT
GGCAGCACAAGCGGTTCTCCCCGCTAGCTCGGGGGGGTTGGGCGAGGACT
CGGGAGTGGTATACTTGGACACTGAGCGCAAGTTCAGCGTGGATCGACTG
ATGGAAATCGCGAGTACACGATTCCCGGATCGCTACGGAGACGAAGCGTC
TCCAGCCGGCCTGGCGCGATTGCTGGATCAGTTCAGCGTGGATCGACTGA
TGGAAATCGCGAGTACACGATTCCCGGATCGCTACGGAGACGAAGCGTCT
CCAGCCGGCCTGGCGCGATTGCTGGATCAGGTGACTGTTTACACCATCGA
CACCTCGTCCGCGCTTCTGGAGCGTTTGGAATCGCTCCAGGCCCACATCA
TCGAGGGAAACGTGCGCCTCATAGTCCTCGACTCGGTCGCGGCTTTGGCG
CGCAGGGTGACTGTTTACACCATCGACACCTCGTCCGCGCTTCTGGAGCG
TTTGGAATCGCTCCAGGCCCACATCATCGAGGGAAACGTGCGCCTCATAG
TCCTCGACTCGGTCGCGGCTTTGGCGCGCAGGGACTTCGCAAGGGAAGAT
ACTATCAACAGACAAGAGGTGCTGACTCGGCAAGCGGCAGTCCTGAAGAC
TTCGCAAGGGAAGATACTATCAACAGACAAGAGGTGCTGACTCGGCAAGC
GGCAGTCCTGAAGAGCCTCGCGTACACATTTTCAGTGGTAGTGCTCGTCA
CGAACCAAGTCACCACCAGTTTTTCCCCCGCGTCGGCTCACGGGAGCCGA
CAGAGCATCGCCAGCCACACCAACTCCAGCTCAAGAGCGGCGGACTCGGC
GTTCGAAACGGAGGTGTCTGGGGGGCGGGGAGGATCGTATATCATCCCTG
CTTTGGGAAACACATGGCATCACTGCGTGTCGAACAGGGAGCCTCGCGTA
CACATTTTCAGTGGTAGTGCTCGTCACGAACCAAGTCACCACCAGTTTTT
CCCCCGCGTCGGCTCACGGGAGCCGACAGAGCATCGCCAGCCACACCAAC
TCCAGCTCAAGAGCGGCGGACTCGGCGTTCGAAACGGAGGTGTCTGGGGG
GCGGGGAGGATCGTATATCATCCCTGCTTTGGGAAACACATGGCATCACT
GCGTGTCGAACAGGCTGATTATGGAGCAACACGAAGGCTATCGGGAGATG
CATCTCACCAAGTCACCCTTAGCCCCGAGAGTCTCGTGTCGCTTCATCGT
GCAAGACACGGGACTTGAAGAAGTTCGGGTGTGACTGATTATGGAGCAAC
ACGAAGGCTATCGGGAGATGCATCTCACCAAGTCACCCTTAGCCCCGAGA
GTCTCGTGTCGCTTCATCGTGCAAGACACGGGACTTGAAGAAGTTCGGGT
GTGA
back to top