mRNA_S-dermatodea_contig12903.1768.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: D7G6A4_ECTSI (Rad51 DNA recombinase 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A4_ECTSI) HSP 1 Score: 281 bits (720), Expect = 2.350e-88 Identity = 156/205 (76.10%), Postives = 175/205 (85.37%), Query Frame = 1
Query: 1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAG-LARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDTINRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASA--HGSRQSIASHTNSSSRAADSAFETEV 606
QGGFPTGMITELVGPAGIGKTQ CL +AAQA LPA GGLGED+GVVYLDTERKFS DRL+EIAS R P YG+ ++ G + RLL+QVTV+ +D S+AL++RLE+LQA +IE NVRLIVLDS+AALARRDFAREDT++RQE+LTRQAAVLKSLAYTFS VVLVTNQVTTSF P S GSRQSIASHTNSSSR SAFETE
Sbjct: 97 QGGFPTGMITELVGPAGIGKTQTCLQVAAQACLPAKLGGLGEDAGVVYLDTERKFSPDRLVEIASERHPGHYGEFSTEKGSMERLLNQVTVFPVDNSAALVDRLETLQARMIESNVRLIVLDSIAALARRDFAREDTLSRQELLTRQAAVLKSLAYTFSAVVLVTNQVTTSFYPTSGLQGGSRQSIASHTNSSSREGKSAFETET 301
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: A0A8B7YX30_ACAPL (DNA repair protein RAD51 homolog 2-like isoform X1 n=5 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YX30_ACAPL) HSP 1 Score: 182 bits (461), Expect = 4.160e-49 Identity = 120/278 (43.17%), Postives = 164/278 (58.99%), Query Frame = 1
Query: 1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYG-DEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDF---AREDTINRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRAADSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIMEQ-HEGYREMHLTKSPLAPRVSCRFIVQDTGLEEVRV*LSDQYDS 819
GG P G I+E+ GP G GKTQ C+M++ A LPA+ GGL D V Y+DTE FS +RL+E+A RFP + DEA A L ++ VY T +LL RL++L+ +I +RLIVLDSVA+L R++F R + I R +L++QAA+LK LA FS+ V+VTNQ+TT + H + Q + ADS G GGSY++ ALGNTW H V+ RLI++ E RE+ KSP+AP +S + +QD G+ L D DS
Sbjct: 123 HGGLPAGTISEIAGPPGCGKTQFCIMLSVLATLPAAMGGL--DGAVAYIDTESAFSAERLVEVARCRFPVHFSCDEAYIA----LTSRIHVYQESTCCSLLARLQNLEEDLITKGIRLIVLDSVASLVRKEFDSSLRGNLIERTNLLSKQAAILKYLAEAFSIPVVVTNQITTRLR--AQHSACQGSTDEAGTLDGGADS--------GVGGSYVMAALGNTWSHNVNTRLILQYLDETRREVLTAKSPIAPFISLVYTIQDRGIV-----LEDSTDS 379
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: UPI000D739116 (DNA repair protein RAD51 homolog 2-like isoform X1 n=3 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D739116) HSP 1 Score: 176 bits (447), Expect = 2.810e-47 Identity = 109/263 (41.44%), Postives = 158/263 (60.08%), Query Frame = 1
Query: 1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFA--REDTINRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRAADSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIME-QHEGYREMHLTKSPLAPRVSCRFIVQDTGL 780
GGFP+G ITE+ GP+G GKTQ CL +A A LP S+GG G V+++DTE FS +RL+EIA R P+ + D+ S L +L+ V + I T L+ RL++L+ +I NVRL+++DSVA+L R++F ++ + R + LT +A +LK +A TFS+ V+VTNQ+TT F A S S S E+ G +Y+ ALGNTW HCV+ RLI++ E R+M + KSP+AP I++D G+
Sbjct: 93 HGGFPSGTITEIAGPSGCGKTQFCLTLAVLATLPVSNGGCG--GTVLFIDTEGAFSAERLVEIARCRLPELFKDDDS---LHQLVSNVYIDLIQTCKNLMNRLKNLEEDLISKNVRLLIVDSVASLVRKEFGSLQDGMMRRTDFLTAEAGLLKHIAETFSIPVVVTNQITTRFGITHAQSSDSSSYDKLESGDGKKTLGSSVEMDGED--TYMTAALGNTWSHCVNTRLILQFLPERRRQMLVAKSPVAPFTCFDIIIKDEGV 348
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: UPI00148A29DC (DNA repair protein RAD51 homolog 2 isoform X2 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A29DC) HSP 1 Score: 174 bits (442), Expect = 9.260e-47 Identity = 105/264 (39.77%), Postives = 157/264 (59.47%), Query Frame = 1
Query: 1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDF---AREDTINRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRAADSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIMEQHEGY-REMHLTKSPLAPRVSCRFIVQDTGL 780
GG P G +TE+ GP+G GKTQ C M++ QA LP + GGL + V+Y+DTE FS +RL+EIA +FPD Y E L R+ + V V T ++L+++LESL+ +I +RL+++DS+A+L R++F A + + R L+RQAA+LK +A F + V+VTNQ+TT F RQ+ D TE+S G Y+ ALGNTW H V+ RLI++ +G R++ + KSP+AP + + +Q G+
Sbjct: 95 HGGIPMGTVTEIAGPSGCGKTQFCTMLSVQATLPGNRGGL--EGKVLYMDTESAFSAERLVEIAQHKFPDLYNSEED---LCRMAENVLVDNHQTCASLIKKLESLEEEVITHRIRLVIVDSIASLVRKEFSSSAGSNLVQRTNFLSRQAALLKYIAEVFCIPVIVTNQITTRFG-------RQATEQ---------DEEETTEISDG----YVTVALGNTWSHNVNTRLILQYLDGEKRQVLVAKSPVAPFTAFNYTIQRDGI 333
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: A0A1S3JDA9_LINUN (DNA repair protein RAD51 homolog 2 isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JDA9_LINUN) HSP 1 Score: 173 bits (438), Expect = 1.430e-46 Identity = 110/268 (41.04%), Postives = 154/268 (57.46%), Query Frame = 1
Query: 1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDTIN---RQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSF----SPASAHGSRQSIASHTNSSSRAADSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIMEQ-HEGYREMHLTKSPLAPRVSCRFIVQDTGL 780
GG P G ITE+ GPAG GKTQ +M++ A +P GGLG VVY+DTE FS +RL+E+A RFP + E S L +L +V VY TSS LL+RL++L+ IIE V+LI+LDSVA+L R++F + N R +L ++AA+LK LA +F + V+VTNQ+TT F S S+ S N Y+ ALGNTW H V+ RLI++ + YR++ + KSP+AP + + +QD G+
Sbjct: 53 HGGIPLGTITEIAGPAGCGKTQFSIMLSVLATVPVEMGGLG--GAVVYIDTESAFSAERLVEVAQNRFPGHFISEES---LLQLTSRVHVYHESTSSQLLKRLQTLEEDIIEKKVKLIILDSVASLVRKEFDSRTSQNLYERTNLLAKEAAILKYLAESFYIPVVVTNQITTRFGFNLSEVDVMEKEDSVTSSENG--------------------YVTAALGNTWSHSVNTRLIIQYLDDRYRQILIAKSPVAPFAAHEYDIQDKGI 295
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: A0A2L2YLV0_PARTP (DNA repair protein RAD51-like protein n=3 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YLV0_PARTP) HSP 1 Score: 174 bits (442), Expect = 2.320e-46 Identity = 107/290 (36.90%), Postives = 163/290 (56.21%), Query Frame = 1
Query: 1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDT---INRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRA-------ADSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIME-QHEGYREMHLTKSPLAPRVSCRFIVQDTGLEEVRV*LSDQYDSVGSSTP 837
QGG P G ITE GP G+GKTQ C M++ +VLP+S+GGL S V+Y+DTE FS DR+ +A +FP Y D+ + LA LL + VY AL E + +L+ +I V++I++DS+A+L R++F E I R +L QAA+LK+LA + +V+ +TNQ+T+ A IA + S A S + ++ GG +++PALGNTW HCV+ RL+ + R++ + KSP+AP + RF + ++G+ V D + + S P
Sbjct: 95 QGGLPFGCITEFAGPPGVGKTQFCFMLSILSVLPSSAGGLS--SKVIYIDTESAFSADRIKTMAQKKFPHLYKDDQN---LANLLQSIMVYKASCIDALKEIIPNLEREVIRNKVKVIIIDSIASLVRKEFGGEQLGSLIQRNNILMEQAALLKNLAQAYDIVIFLTNQITSHI--AELESVAMDIAEEDENISSAYVGVPPPVCSEKKVKLHGGNA-DHVVPALGNTWSHCVNTRLVAQFLDSSVRQLIIAKSPVAPNAAVRFFINESGI----VLTGDDIEFINMSDP 372
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: A0A8J1U3G7_OWEFU (Ofus.G093117 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U3G7_OWEFU) HSP 1 Score: 172 bits (436), Expect = 3.270e-46 Identity = 108/269 (40.15%), Postives = 160/269 (59.48%), Query Frame = 1
Query: 1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDTIN---RQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRAADSAFETEVSG-----GRGGSYIIPALGNTWHHCVSNRLIMEQHEGY-REMHLTKSPLAPRVSCRFIVQDTGL 780
GG P G ITE+ GP+G GKTQ +M++ A LP +GGL D GV+Y+DTE FS +RL E+A RFPD +E S + ++ +V VY T S+L +RL++L+ II ++LIVLDSVA+L R++F + T N R +L ++AA+LK LA +F + V+VTNQ+TT + N+S D + V+G G GG Y+ ALGNTW H V+ RLI++ + R++ + KSP+AP + + ++D G+
Sbjct: 54 HGGLPAGTITEIAGPSGCGKTQFSIMLSLLATLPIQNGGL--DGGVIYIDTESAFSAERLAEMAQCRFPDLINNEES---ILKVATRVHVYLESTCSSLFKRLQNLEEDIISKGIKLIVLDSVASLVRKEFDTKGTKNITQRTNLLAQEAAILKYLAESFKIPVVVTNQITTRYGQG-------------NTSDAGNDVNHDMSVNGMSSLDGDGG-YVTAALGNTWSHSVNTRLIVQYLDNVKRQILIAKSPVAPFAAFTYTIEDKGI 303
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: UPI00139057E6 (DNA repair protein RAD51 homolog 2 isoform X3 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00139057E6) HSP 1 Score: 172 bits (437), Expect = 6.420e-46 Identity = 109/265 (41.13%), Postives = 160/265 (60.38%), Query Frame = 1
Query: 1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDTIN---RQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRAADSAFETEVSGGRGGS-YIIPALGNTWHHCVSNRLIME-QHEGYREMHLTKSPLAPRVSCRFIVQDTGL 780
GG P G ITE+ GPAG GKTQ C+M++ A LP GGLG + V+Y+DTE FS R++E+A RFP + ++ S + L +++ V+ T AL ERL+SL+ +I V+LIVLDSVA+L R++F + + N R +L+++AA+LK +A TF++ V+VTNQ+T+ F+P S H + I EV GS ++I ALGNTW H V+ RLI++ E YR++ + KSP+AP + +Q GL
Sbjct: 94 HGGLPCGTITEITGPAGCGKTQFCIMLSILATLPQDQGGLG--ANVIYIDTEAAFSATRMVEMAENRFPGLFENQNS---VLSLTEKIHVFWEPTCKALWERLQSLEEEVISRKVKLIVLDSVASLIRKEFDSQSSRNIKERTNLLSKEAAILKYIAETFNIPVVVTNQITSRFAP-SKHVTEADI-----------PDVDGVEVEADEEGSDHVIAALGNTWSHAVNTRLIVQFLDETYRQVMIAKSPIAPFDVFTYSIQIEGL 341
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: A0A1Y1ICX6_KLENI (Putative DNA repair protein RAD51 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ICX6_KLENI) HSP 1 Score: 173 bits (438), Expect = 6.680e-46 Identity = 108/264 (40.91%), Postives = 151/264 (57.20%), Query Frame = 1
Query: 1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDTINRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSPASAHGSRQSIASHTNSSSRAA----DSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIMEQHEGYREMHLTKSPLAPRVSCRFIVQDTGL 780
+GG P G ITELVGPAG+GKTQ CLM++ A LP GGL D VY+DTE KFS RL+EIA+ R PD + DE + + L +V V +++ LL RL+ L+ +I +LIVLDSVAAL R ++ + RQ++L RQAA+LK LA TF + V+VTNQV A + H R + DS +++ + ALG W H V+ RL++E+H G R + + KSP+AP ++ + + GL
Sbjct: 104 RGGVPLGSITELVGPAGVGKTQLCLMLSIFATLPTDIGGL--DGKCVYIDTENKFSAKRLIEIATMRLPDSFPDEQA---VQHLTSRVLVLRPNSAIDLLTRLQKLEEAMIREKAKLIVLDSVAALVRSEYGHDQLQQRQDLLGRQAALLKYLAETFRIPVVVTNQVMAQMG-APSQQPNYGFVEHERKKLRPSPGYEDSTYDSST--------VTAALGTKWAHAVNTRLVLERHAGQRYIRIAKSPMAPSLAFPYAIAAGGL 353
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Match: A0A0D2X0X1_CAPO3 (RECA_2 domain-containing protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X0X1_CAPO3) HSP 1 Score: 172 bits (435), Expect = 2.130e-45 Identity = 107/262 (40.84%), Postives = 158/262 (60.31%), Query Frame = 1
Query: 1 QGGFPTGMITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVDRLMEIASTRFPDRYGDEASPAGLARLLDQVTVYTIDTSSALLERLESLQAHIIEGNVRLIVLDSVAALARRDFAREDTINRQEVLTRQAAVLKSLAYTFSVVVLVTNQVTTSFSP-ASAHGSRQSIASHTNSSSRAADSAFETEVSGGRGGSYIIPALGNTWHHCVSNRLIMEQ-HEGYREMHLTKSPLAPRVSCRFIVQDTGL 780
+GGF ITELVGP+G GKTQ C+M+A QA LP GGLG GVVY+DTE FS RL+E+A R+P Y + + + +L +++ + + T +L+ RL++L I+E +L++LDSVA+L R+++ + + R L+ A+VLK LA +FS+ ++VTNQVTTS S AS G+ AS S+ R D E + ALGNTW HCV+ RL++E + R + + KSP+AP S ++++ GL
Sbjct: 96 RGGFAFSTITELVGPSGCGKTQFCMMLAVQASLPLEHGGLG--GGVVYIDTESAFSATRLVEMAVARYPHVYDNAEA---VDKLANRILICSEATCESLMARLDTLDQAIVERGAKLVILDSVASLVRKEYDSKSMVQRTAYLSNVASVLKYLAESFSIPIVVTNQVTTSVSMRASFDGNNYGGAS---SAQRETDGVENVEAQ-------VTAALGNTWSHCVNTRLVVEYVTDELRTVKIAKSPIAPCASFSYVIEPEGL 342 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12903.1768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12903.1768.1 >prot_S-dermatodea_contig12903.1768.1 ID=prot_S-dermatodea_contig12903.1768.1|Name=mRNA_S-dermatodea_contig12903.1768.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=259bp MITELVGPAGIGKTQACLMMAAQAVLPASSGGLGEDSGVVYLDTERKFSVback to top mRNA from alignment at S-dermatodea_contig12903:119..4218+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12903.1768.1 ID=mRNA_S-dermatodea_contig12903.1768.1|Name=mRNA_S-dermatodea_contig12903.1768.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4100bp|location=Sequence derived from alignment at S-dermatodea_contig12903:119..4218+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12903:119..4218+ >mRNA_S-dermatodea_contig12903.1768.1 ID=mRNA_S-dermatodea_contig12903.1768.1|Name=mRNA_S-dermatodea_contig12903.1768.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at S-dermatodea_contig12903:119..4218+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |