mRNA_S-dermatodea_contig12887.1759.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12887.1759.1
Unique NamemRNA_S-dermatodea_contig12887.1759.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12887.1759.1 vs. uniprot
Match: D7FM85_ECTSI (KH_dom_type_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM85_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.020e-20
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:   49 QVAVPDHMVGVILGKGGATVIDMQHLTGARIQVSQRGEYIPGTHNR 186
            QVA+PDH+VGVILGKGGATVIDMQ+ TGARIQVSQRGEYIPGT NR
Sbjct:   11 QVAIPDHLVGVILGKGGATVIDMQNQTGARIQVSQRGEYIPGTTNR 56
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BLAST of mRNA_S-dermatodea_contig12887.1759.1 vs. uniprot
Match: A0A6H5KV61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV61_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 6.400e-17
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   49 QVAVPDHMVGVILGKGGATVIDMQHLTGARIQVSQRGEYIPGTHNR 186
            QVA+PDH+VGVILGK GATVIDMQ+ TGARIQVSQRGEYIPGT NR
Sbjct: 1058 QVAIPDHLVGVILGKRGATVIDMQNQTGARIQVSQRGEYIPGTTNR 1103
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BLAST of mRNA_S-dermatodea_contig12887.1759.1 vs. uniprot
Match: U6DTT7_NEOVI (RNA-binding protein Nova-2 (Fragment) n=1 Tax=Neovison vison TaxID=452646 RepID=U6DTT7_NEOVI)

HSP 1 Score: 75.9 bits (185), Expect = 1.680e-16
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 LTVLRLSAIFCAFLIQVAVPDHMVGVILGKGGATVIDMQHLTGARIQVSQRGEYIPGTHNRYDTCT 201
            LT  +L+A     L+++AVP+++VG ILGKGG T+++ Q LTGARIQ+S++GE++PGT NR  T T
Sbjct:   13 LTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRGTIT 78
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BLAST of mRNA_S-dermatodea_contig12887.1759.1 vs. uniprot
Match: UPI000695E587 (RNA-binding protein Nova-2 n=1 Tax=Chinchilla lanigera TaxID=34839 RepID=UPI000695E587)

HSP 1 Score: 75.1 bits (183), Expect = 7.590e-16
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 LTVLRLSAIFCAFLIQVAVPDHMVGVILGKGGATVIDMQHLTGARIQVSQRGEYIPGTHNRYDTCT 201
            LT  +L+A     L+++AVP+++VG ILGKGG T+++ Q LTGARIQ+S++GE++PGT NR  T T
Sbjct:   14 LTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTIT 79
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BLAST of mRNA_S-dermatodea_contig12887.1759.1 vs. uniprot
Match: A0A7F8RUZ8_LEPWE (RNA-binding protein Nova-2 n=1 Tax=Leptonychotes weddellii TaxID=9713 RepID=A0A7F8RUZ8_LEPWE)

HSP 1 Score: 75.1 bits (183), Expect = 8.620e-15
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 LTVLRLSAIFCAFLIQVAVPDHMVGVILGKGGATVIDMQHLTGARIQVSQRGEYIPGTHNRYDTCT 201
            LT  +L+A     L+++AVP+++VG ILGKGG T+++ Q LTGARIQ+S++GE++PGT NR  T T
Sbjct:  129 LTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTIT 194
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BLAST of mRNA_S-dermatodea_contig12887.1759.1 vs. uniprot
Match: A0A8C3UUG3_CATUS (KH domain-containing protein n=2 Tax=Archelosauria TaxID=1329799 RepID=A0A8C3UUG3_CATUS)

HSP 1 Score: 72.4 bits (176), Expect = 9.880e-15
Identity = 30/54 (55.56%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:   46 IQVAVPDHMVGVILGKGGATVIDMQHLTGARIQVSQRGEYIPGTHNRYDTCTII 207
            +++AVP+++VG ILGKGG T+++ Q LTGARIQ+S++GE++PGT NR   CT++
Sbjct:   41 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNR---CTVL 91
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BLAST of mRNA_S-dermatodea_contig12887.1759.1 vs. uniprot
Match: H0W1Y8_CAVPO (NOVA alternative splicing regulator 2 n=1 Tax=Cavia porcellus TaxID=10141 RepID=H0W1Y8_CAVPO)

HSP 1 Score: 75.1 bits (183), Expect = 1.620e-14
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 LTVLRLSAIFCAFLIQVAVPDHMVGVILGKGGATVIDMQHLTGARIQVSQRGEYIPGTHNRYDTCT 201
            LT  +L+A     L+++AVP+++VG ILGKGG T+++ Q LTGARIQ+S++GE++PGT NR  T T
Sbjct:  175 LTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTIT 240
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BLAST of mRNA_S-dermatodea_contig12887.1759.1 vs. uniprot
Match: UPI0005F4AA44 (RNA-binding protein Nova-2-like n=1 Tax=Colobus angolensis palliatus TaxID=336983 RepID=UPI0005F4AA44)

HSP 1 Score: 75.1 bits (183), Expect = 1.870e-14
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 LTVLRLSAIFCAFLIQVAVPDHMVGVILGKGGATVIDMQHLTGARIQVSQRGEYIPGTHNRYDTCT 201
            LT  +L+A     L+++AVP+++VG ILGKGG T+++ Q LTGARIQ+S++GE++PGT NR  T T
Sbjct:  188 LTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTIT 253
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BLAST of mRNA_S-dermatodea_contig12887.1759.1 vs. uniprot
Match: L8IMA2_9CETA (RNA-binding protein Nova-2 (Fragment) n=3 Tax=Laurasiatheria TaxID=314145 RepID=L8IMA2_9CETA)

HSP 1 Score: 75.1 bits (183), Expect = 2.130e-14
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 LTVLRLSAIFCAFLIQVAVPDHMVGVILGKGGATVIDMQHLTGARIQVSQRGEYIPGTHNRYDTCT 201
            LT  +L+A     L+++AVP+++VG ILGKGG T+++ Q LTGARIQ+S++GE++PGT NR  T T
Sbjct:  201 LTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTIT 266
[Close]
BLAST of mRNA_S-dermatodea_contig12887.1759.1 vs. uniprot
Match: A0A670XVA5_PSETE (KH domain-containing protein n=1 Tax=Pseudonaja textilis TaxID=8673 RepID=A0A670XVA5_PSETE)

HSP 1 Score: 72.4 bits (176), Expect = 2.470e-14
Identity = 30/52 (57.69%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   46 IQVAVPDHMVGVILGKGGATVIDMQHLTGARIQVSQRGEYIPGTHNRYDTCT 201
            +++AVP+++VG ILGKGG T+++ Q LTGARIQ+S++GE++PGT NR  T T
Sbjct:   62 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 113
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12887.1759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM85_ECTSI3.020e-2089.13KH_dom_type_1 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KV61_9PHAE6.400e-1786.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
U6DTT7_NEOVI1.680e-1653.03RNA-binding protein Nova-2 (Fragment) n=1 Tax=Neov... [more]
UPI000695E5877.590e-1653.03RNA-binding protein Nova-2 n=1 Tax=Chinchilla lani... [more]
A0A7F8RUZ8_LEPWE8.620e-1553.03RNA-binding protein Nova-2 n=1 Tax=Leptonychotes w... [more]
A0A8C3UUG3_CATUS9.880e-1555.56KH domain-containing protein n=2 Tax=Archelosauria... [more]
H0W1Y8_CAVPO1.620e-1453.03NOVA alternative splicing regulator 2 n=1 Tax=Cavi... [more]
UPI0005F4AA441.870e-1453.03RNA-binding protein Nova-2-like n=1 Tax=Colobus an... [more]
L8IMA2_9CETA2.130e-1453.03RNA-binding protein Nova-2 (Fragment) n=3 Tax=Laur... [more]
A0A670XVA5_PSETE2.470e-1457.69KH domain-containing protein n=1 Tax=Pseudonaja te... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12887contigS-dermatodea_contig12887:2726..2950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue4e-15
Seed eggNOG ortholog2880.D7FM85
KEGG koko:K14944
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010467,GO:0016070,GO:0034641,GO:0042221,GO:0042592,GO:0043170,GO:0043900,GO:0043903,GO:0044237,GO:0044238,GO:0046483,GO:0046719,GO:0048878,GO:0050789,GO:0050792,GO:0050896,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.RNA splicing
EggNOG OGsKOG2191@1,KOG2191@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionK Homology domain, type 1
Ec32 orthologEc-16_004710.1
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924266.0002077-CDS-S-dermatodea_contig12887:2725..29501622924266.0002077-CDS-S-dermatodea_contig12887:2725..2950Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12887 2726..2950 -
1694079136.4928875-CDS-S-dermatodea_contig12887:2725..29501694079136.4928875-CDS-S-dermatodea_contig12887:2725..2950Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12887 2726..2950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12887.1759.1prot_S-dermatodea_contig12887.1759.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12887 2726..2950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12887.1759.1

>prot_S-dermatodea_contig12887.1759.1 ID=prot_S-dermatodea_contig12887.1759.1|Name=mRNA_S-dermatodea_contig12887.1759.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=75bp
LLTVLRLSAIFCAFLIQVAVPDHMVGVILGKGGATVIDMQHLTGARIQVS
QRGEYIPGTHNRYDTCTIILILYV*
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mRNA from alignment at S-dermatodea_contig12887:2726..2950-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12887.1759.1 ID=mRNA_S-dermatodea_contig12887.1759.1|Name=mRNA_S-dermatodea_contig12887.1759.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at S-dermatodea_contig12887:2726..2950- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGCTGACCGTGCTTCGTCTTTCGGCGATTTTTTGTGCCTTCTTGATCCA
GGTTGCCGTGCCTGATCACATGGTGGGGGTCATCCTTGGCAAAGGCGGTG
CCACGGTGATCGACATGCAGCACCTCACGGGGGCGCGCATCCAAGTCAGC
CAGCGCGGGGAGTACATCCCCGGCACGCACAACAGGTACGATACTTGTAC
TATTATACTAATACTGTATGTGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12887:2726..2950-

>mRNA_S-dermatodea_contig12887.1759.1 ID=mRNA_S-dermatodea_contig12887.1759.1|Name=mRNA_S-dermatodea_contig12887.1759.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at S-dermatodea_contig12887:2726..2950- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGCTGACCGTGCTTCGTCTTTCGGCGATTTTTTGTGCCTTCTTGATCCA
GGTTGCCGTGCCTGATCACATGGTGGGGGTCATCCTTGGCAAAGGCGGTG
CCACGGTGATCGACATGCAGCACCTCACGGGGGCGCGCATCCAAGTCAGC
CAGCGCGGGGAGTACATCCCCGGCACGCACAACAGGTACGATACTTGTAC
TATTATACTAATACTGTATGTGTAATTGCTGACCGTGCTTCGTCTTTCGG
CGATTTTTTGTGCCTTCTTGATCCAGGTTGCCGTGCCTGATCACATGGTG
GGGGTCATCCTTGGCAAAGGCGGTGCCACGGTGATCGACATGCAGCACCT
CACGGGGGCGCGCATCCAAGTCAGCCAGCGCGGGGAGTACATCCCCGGCA
CGCACAACAGGTACGATACTTGTACTATTATACTAATACTGTATGTGTAA
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