mRNA_S-dermatodea_contig12874.1754.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12874.1754.1
Unique NamemRNA_S-dermatodea_contig12874.1754.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12874.1754.1 vs. uniprot
Match: A0A6H5KTS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTS4_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.210e-30
Identity = 56/84 (66.67%), Postives = 67/84 (79.76%), Query Frame = 2 
Query:    5 MIDCTVLVTTTVRDLCGRMHAANLVPLECPIFVIKSNAGVFGAGVSGEGNFSTYENRDIELDPIAPVTAVLTVAYIPPEQVSSG 256
            MID  V ++ T+R+LC R H++NLVP+ECPI V +S++GV+GAGVSGEGN STYE RDIELDP  P T VLTVAYIPPE  S G
Sbjct:   14 MIDGNVFLSRTLRELCSRFHSSNLVPVECPIVVAESDSGVYGAGVSGEGNHSTYEGRDIELDPPPPTTCVLTVAYIPPEGGSDG 97
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BLAST of mRNA_S-dermatodea_contig12874.1754.1 vs. uniprot
Match: D7G900_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G900_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 6.860e-29
Identity = 53/79 (67.09%), Postives = 67/79 (84.81%), Query Frame = 2 
Query:    5 MIDCTVLVTTTVRDLCGRMHAANLVPLECPIFVIKSNAGVFGAGVSGEGNFSTYENRDIELDPIAPVTAVLTVAYIPPE 241
            MID  V ++TT+R+LC R H++NL+P+ECPI V +S++GV+GAGVSGEG++STYE RDIELDP  P T VLTVAYIPPE
Sbjct:   27 MIDGNVFLSTTLRELCSRFHSSNLIPVECPIVVAESDSGVYGAGVSGEGDYSTYEGRDIELDPPPPTTCVLTVAYIPPE 105
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12874.1754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTS4_9PHAE5.210e-3066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G900_ECTSI6.860e-2967.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12874contigS-dermatodea_contig12874:3472..5485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002450.1
Exons2
Model size256
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12874.1754.1prot_S-dermatodea_contig12874.1754.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12874 3476..5485 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924265.493571-UTR-S-dermatodea_contig12874:3471..34751622924265.493571-UTR-S-dermatodea_contig12874:3471..3475Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12874 3472..3475 +
1694079136.1029456-UTR-S-dermatodea_contig12874:3471..34751694079136.1029456-UTR-S-dermatodea_contig12874:3471..3475Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12874 3472..3475 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924265.505943-CDS-S-dermatodea_contig12874:3475..35801622924265.505943-CDS-S-dermatodea_contig12874:3475..3580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12874 3476..3580 +
1694079136.110832-CDS-S-dermatodea_contig12874:3475..35801694079136.110832-CDS-S-dermatodea_contig12874:3475..3580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12874 3476..3580 +
1622924265.5142183-CDS-S-dermatodea_contig12874:5338..54851622924265.5142183-CDS-S-dermatodea_contig12874:5338..5485Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12874 5339..5485 +
1694079136.1227226-CDS-S-dermatodea_contig12874:5338..54851694079136.1227226-CDS-S-dermatodea_contig12874:5338..5485Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12874 5339..5485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12874.1754.1

>prot_S-dermatodea_contig12874.1754.1 ID=prot_S-dermatodea_contig12874.1754.1|Name=mRNA_S-dermatodea_contig12874.1754.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp
MIDCTVLVTTTVRDLCGRMHAANLVPLECPIFVIKSNAGVFGAGVSGEGN
FSTYENRDIELDPIAPVTAVLTVAYIPPEQVSSG
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mRNA from alignment at S-dermatodea_contig12874:3472..5485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12874.1754.1 ID=mRNA_S-dermatodea_contig12874.1754.1|Name=mRNA_S-dermatodea_contig12874.1754.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2014bp|location=Sequence derived from alignment at S-dermatodea_contig12874:3472..5485+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCATGATCGATTGCACCGTTCTTGTGACCACTACGGTCAGAGACCTGT
GCGGCAGGATGCACGCCGCCAACCTCGTACCACTGGAGTGTCCCATATTC
GTCATTAAGGTGCGAGTTTTGGGTAAGGGGCGGGGGGGGGAGGGGGCGGG
GGCGTACTCGTGTTTTGCATGCCTTAGCTGTTAGACCATTGACCGCGCGT
CCTCGAGAGGACGGAGCATTGTTCTCACAGGATCGATCGCCGGTGGCCAA
TCGTTCCTTCCTACTCTAAGTGGTGCATTTTTGTGTTCTTATCCTGTCTA
CATAACTTCTCGCGCTCTCGGGCCGCTTATTATCCCCGAGCGTGAGATGT
ATCTATGTTAAACGCATGTCGTATCCAAACGGACATAGGCCACGCGTCCC
AACAATGCCGGGACGGAGCGATATGCCGGGTTTTCGCCGACCAGGCTTCA
TTTCACAAGGATGAAACATACCAGCTGCTAACCATTATCCTTGCGTTTGC
GACGCCAACAGATATACCATGGGCTGATTGGACTACTGTACCGGACAACC
AAATACTGCACATACAATCGGCGTGGCTATACTCCAAGTACCGCAAAGGG
GAATTGGTGTCCGTACGAACGCAAACGTGCCGCACGCACACATTAGTACA
GTAGTATACACGGCGGTGTATGTGTGCTACACTCAGACTATCACCTGCTC
ATGAGCACTCCTTGCGGAGTACCAGGTACCAATCATGAAGTCAATGGTTG
CCCTAGGGCGTTCCAACAATCCAATATTCAGCACGTATCCCACAGGATGT
TATGCGTTTCACCCCTTTGGGGAGAGACAAGACTCTTCGACGGAGGTCTC
TTGAGCTCACAGGGTATACCGCATAACTCCGCTGGAGGGGGTAACCAACC
TTAAAAGGTCGCCTTGGCGGTGGTGCTCGTTGTGATGCTGCAAGTACAGC
TGCCGTGGCCAACCTATGCTTGTAATTCAGATGTAGAGTTGCCAGGTTTG
ATTGTACCACAAGAATAGCGCTGCCGAGATGACCAACTTCTCTCGCGCGC
TTGTACTGTTGTGCTGCTGTTGTGGCTTTGTACTGCCTTCCCAGTACCTC
TGCGTCGGCTTCGAGTTGGAGACCGCGACAGTGCTTTATGGTATCCCGGT
TTCCCTTCGCGTGTCGTACCTGCAAGTATTGCTCCGGGGCCCTTGCGACA
GGCGCACTCTACCTCGAGTCCATTGGCCACCAAAATTTTATCTTAACCGA
AGACACGCGAAAGCTCTCTCGCATCGCTCTTCGGCTTCCGAACAAACGTC
GCCCCCGTCCCCCTCGAGAAACCTAGGAACTCCTATCAATGCTTGCCCGC
TGCGATCTTGCCCCCCCCCCCCAAACACAAATAAAATTGGCCTGAGAAGG
CGAGAATTGAAGTAGACAGGATAGGAAAACTTTTCTGCGCCGCCTTTGAC
AAAACAGGAAGGAGCGATTGGCCATCGGCGATAGATCCTGTGGGAACGAT
GCTCCCTCCGTCCTCCCGATGACACGTGGTCAATGAGTTATTAACTCCGT
TTCTATCGAGCGCTTTTTCGCTCACGAAGCGTGAGAGAGCCAATGCGCCG
CTTGTTTTTTTAATCTTTCTCTCCGCCGTTTCGCAGGGAAAATAAAATCA
GCTCACGTTTCGTGACGTGAGCACTCGCGAAAAAAAACGTGGAGGGTTCA
ATTCACGAAACGTGAGGTTTGTAAAAAGGCGTGTTTAATCAAATGTAACT
TTTCGTTAGGTGTCCATTTTCGTGAGAAAATCAGCTCCGATAGAAACGGC
CCTTCTTATAGCAGCTGAGACATGCAACACTAAAACATTGTTACCTCTCC
TCCTCTCTCTTTCACAGAGCAATGCTGGCGTGTTCGGAGCTGGCGTGTCC
GGAGAGGGAAACTTCTCGACGTACGAAAACCGCGACATAGAACTCGACCC
CATCGCCCCCGTCACCGCGGTCCTCACCGTCGCCTACATCCCACCGGAGC
AAGTTAGCAGCGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12874:3472..5485+

>mRNA_S-dermatodea_contig12874.1754.1 ID=mRNA_S-dermatodea_contig12874.1754.1|Name=mRNA_S-dermatodea_contig12874.1754.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig12874:3472..5485+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCGATTGCACCGTTCTTGTGACCACTACGGTCAGAGACCTGTGCGG
CAGGATGCACGCCGCCAACCTCGTACCACTGGAGTGTCCCATATTCGTCA
TTAAGATGATCGATTGCACCGTTCTTGTGACCACTACGGTCAGAGACCTG
TGCGGCAGGATGCACGCCGCCAACCTCGTACCACTGGAGTGTCCCATATT
CGTCATTAAGAGCAATGCTGGCGTGTTCGGAGCTGGCGTGTCCGGAGAGG
GAAACTTCTCGACGTACGAAAACCGCGACATAGAACTCGACCCCATCGCC
CCCGTCACCGCGGTCCTCACCGTCGCCTACATCCCACCGGAGCAAGTTAG
CAGCGGAAGCAATGCTGGCGTGTTCGGAGCTGGCGTGTCCGGAGAGGGAA
ACTTCTCGACGTACGAAAACCGCGACATAGAACTCGACCCCATCGCCCCC
GTCACCGCGGTCCTCACCGTCGCCTACATCCCACCGGAGCAAGTTAGCAG
CGGA
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