mRNA_S-dermatodea_contig12874.1753.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12874.1753.1
Unique NamemRNA_S-dermatodea_contig12874.1753.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12874.1753.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 3.380e-80
Identity = 139/269 (51.67%), Postives = 177/269 (65.80%), Query Frame = 1
Query:   58 RKSLVRRQRRAFREHIKPMLADGTFSKRFRMDYTSFRILYQLLRPVLERNYNAGLGRNGTIPGEWALASTLRWLAGGSIWEAMDGPVMAHSTAYAKAKLVCLAINKCAALRVRWPKTQEALAQAAAGFEARSSSGVVKNSVGAADGLLIRRRKPRTKEHIAPDRFYSGHKKAVGMNMQAICDAQYRFIAVACTCPGSTNDRTAWGLSGFDRAVEQLPYPYVITGDAAYAPSEKMLVPYPGTGLETYADAYNYFQSQSRMPIEQTFGIFV 864
            R   VRR+RR++  + KPM+ DGTF  RFRMDYT F +L  +LRP LERN   G  RNG IP E+ LA  LR+LAGGS++E MDG V+A STAYA    V  AIN+   L   WP+ ++AL Q    +  RS++GV++  VGA DGL +R  +P  + H+ P  FYSGHKK  GMN Q +C+A+Y  IA    CPGS NDRTA+  S F   ++ LP    I GDAAY  S+++LVPYPGT L    DAYN++QSQ+R+ IEQ FGI V
Sbjct:   42 RDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMV 309          
BLAST of mRNA_S-dermatodea_contig12874.1753.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 2.320e-79
Identity = 140/271 (51.66%), Postives = 175/271 (64.58%), Query Frame = 1
Query:   52 ARRKSLVRRQRRAFREHIKPMLADGTFSKRFRMDYTSFRILYQLLRPVLERNYNAGLGRNGTIPGEWALASTLRWLAGGSIWEAMDGPVMAHSTAYAKAKLVCLAINKCAALRVRWPKTQEALAQAAAGFEARSSSGVVKNSVGAADGLLIRRRKPRTKEHIAPDRFYSGHKKAVGMNMQAICDAQYRFIAVACTCPGSTNDRTAWGLSGFDRAVEQLPYPYVITGDAAYAPSEKMLVPYPGTGLETYADAYNYFQSQSRMPIEQTFGIFV 864
            A R + V R+RR+F  +++PM+ D TF KRFRMDYT F  L  +LRP L+R+   G  RNG IP E+ LA TLR+LAGGS++E MD  V+A STAYA    V  AIN+   L  +WP   +A AQA   +  RS++GV++  VGA DGL +R   P  K H  P  FYSGHKKA GMN Q IC+A Y  I     CPGS NDRTA+  SGFD  + ++P    I GDAAY  S ++LVP PGT L    DAYN++QSQ+R+ IEQ FGI V
Sbjct:   44 AHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQAEL-YRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGILV 313          
BLAST of mRNA_S-dermatodea_contig12874.1753.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 5.860e-72
Identity = 126/236 (53.39%), Postives = 156/236 (66.10%), Query Frame = 1
Query:  157 TSFRILYQLLRPVLERNYNAGLGRNGTIPGEWALASTLRWLAGGSIWEAMDGPVMAHSTAYAKAKLVCLAINKCAALRVRWPKTQEALAQAAAGFEARSSSGVVKNSVGAADGLLIRRRKPRTKEHIAPDRFYSGHKKAVGMNMQAICDAQYRFIAVACTCPGSTNDRTAWGLSGFDRAVEQLPYPYVITGDAAYAPSEKMLVPYPGTGLETYADAYNYFQSQSRMPIEQTFGIFV 864
            TS  +L   LRP L++N   GL RNG IP E  +A TLRWLAGGSI+E MDG V+A STAY     V  A+N C  L  +WP+ ++A A+AA  F  RSS  VV+  VGA DGL +R  KP  KE   P+ +Y+GHKK  GMN QA+CDAQYR +A    CPGS NDRTA+  SGFD+ +  LP  + + GDAAY  SE+++VP+PGT L    DA NY+ SQ RM IEQT+GI V
Sbjct:   68 TSGLVLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDA-ARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 302          
BLAST of mRNA_S-dermatodea_contig12874.1753.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 3.360e-59
Identity = 121/272 (44.49%), Postives = 157/272 (57.72%), Query Frame = 1
Query:   49 KARRKSLVRRQRRAFREHIKPMLADGTFSKRFRMDYTSFRILYQLLRPVLERNYNAGLGRNGTIPGEWALASTLRWLAGGSIWEAMDGPVMAHSTAYAKAKLVCLAINKCAALRVRWPKTQEALAQAAAGFEARSSSGVVKNSVGAADGLLIRRRKPRTKEHIAPDRFYSGHKKAVGMNMQAICDAQYRFIAVACTCPGSTNDRTAWGLSGFDRAVEQLPYPYVITGDAAYAPSEKMLVPYPGTGLETYADAYNYFQSQSRMPIEQTFGIFV 864
            K  R +LV R+RR F  +IKPML D TFS RFRM+Y  FR+L   LRP L++N   GL RNG IP E+ +A TLRWLAGGSI+E MDG V+A STAY     V  A+N C  L  +WP+ ++ L +  +     +   VV+  VGA DGL +R  KP  KE   P+ +Y+GHKK  GMN Q +C               S NDRTA+  SGFD+ +  LP  + + G+AAY  SE+++VP+PGT                  P EQT+GI V
Sbjct:   43 KRNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGED-LPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ-VC---------------SQNDRTAFNFSGFDKLLAGLPEGHFVVGNAAYGASERVVVPFPGTSP----------------PXEQTYGILV 281          
BLAST of mRNA_S-dermatodea_contig12874.1753.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 3.360e-51
Identity = 109/270 (40.37%), Postives = 132/270 (48.89%), Query Frame = 1
Query:   58 RKSLVRRQRRAFREHIKPMLADGTFSKRFRMDYTSFRILYQLLRPVLERNYNAGLGRNGTIPGEWALASTLRWLAGGSIWEAMDGPVMAHSTAYAKAKLVCLAINKCAALRVRWPKTQEALAQAAAGFEARSSSGVVKNSVGAADGLLIRRRKPRTKEHIAPDRFYSGHKKAVGMNMQAICDAQYRFIAVACTCPGSTNDRTAWGLSGFDRAVEQLPYPYVITGDAAYAPSEKMLVPYPGTGLETYADAYNYFQSQSRMPIEQTFGIFVS 867
            R +LV R RR F  +IKPML D TFS RFRM+Y  FR+L   LRP L++N   GL RNG IP E+ +A TLRWLAGGS +E MDG V+A STAY                                                                                    A+CDAQYR +A    CPGS NDRTA+  SGFD+ +  LP  + + GDAAY  SE+++VP+PGT L    DA NY+ SQ RM IEQT+GI VS
Sbjct:   46 RSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY-----------------------------------------------------------------------------------HAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQTYGILVS 232          
BLAST of mRNA_S-dermatodea_contig12874.1753.1 vs. uniprot
Match: A0A6H5JEM6_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM6_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 9.780e-42
Identity = 102/244 (41.80%), Postives = 134/244 (54.92%), Query Frame = 1
Query:  148 MDYTSFRILYQLLRPVLERNYNAGL---GRNGTIPGEWALASTLRWLAGGSIWEAMDGPVMAHSTAYAKAKLVCLAINKCAALRV-RWPKTQEALAQAAAGFEARSSSGVVKNSVGAADGLLIRRRKPRTKEHIAPDRFYSGHKKAVGMNMQAICDAQYRFIAVACTCPGSTNDRTAWGLSGFDRAVEQLPYPYVITGDAAYAPSEKMLVPYPGTGLETYADAYNYFQSQSRMPIEQTFGIFVS 867
            M+  SF  L +LLRP LE N   G     RNG I  E  +A  LR LAG S W+ +    ++ +  Y     V  AIN   A+    +P T+E   + A  F+ +S+ G+    V A DGL I+   PR KE      +Y G K A G+N+QA+C A YRF A++   PGSTND  AW  S   +AV +LP  + I GDAAY   EK+L PYPG  L    D++N+  SQ R+ IEQ+FGI VS
Sbjct:    1 MEKGSFHKLVELLRPSLEVNAFFGALRSPRNGAISVEVRVAVALRILAGASYWDVLVMFGLSVAVTYQILWEVIDAINNTPAVGAFDFPLTEEGCMRNANRFKDKSTDGIFSWVVAAVDGLFIKAEAPRAKETKNVIAYYPGSKSAYGINVQAMCTADYRFCAMSAISPGSTNDWVAWTRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVS 244          
BLAST of mRNA_S-dermatodea_contig12874.1753.1 vs. uniprot
Match: A0A6H5JUE6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE6_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 2.600e-41
Identity = 101/259 (39.00%), Postives = 142/259 (54.83%), Query Frame = 1
Query:   97 EHIKPMLADGTFSKRFRMDYTSFRILYQLLRPVLERN--YNAGLGRNGTIPGEWALASTLRWLAGGSIWEAMDGPVMAHSTAYAKAKLVCLAINKCAALR-VRWPKTQEALAQAAAGFEARSSSGVVKNSVGAADGLLIRRRKPRTKEHIAPDRFYSGHKKAVGMNMQAICDAQYRFIAVACTCPGSTNDRTAWGLSGFDRAVEQLPYPYVITGDAAYAPSEKMLVPYPGTGLETYADAYNYFQSQSRMPIEQTFGIFV 864
            EH++ +     F + +RM+   F  L  LLRP+LERN  Y     R+G +P +  LA  LR LAG S  +      +A  T +     V  AIN    +    +P+T E  A+ A  +EA+S+ G +   V A DGL ++   P   +      ++SG+K   G+N+QA CDA YRF +++    G+TND TAW  S   RAV +LP  Y + GDAAY  S+++L PYPG  L    DAYN++ SQ R+ IEQ FGI V
Sbjct:   76 EHVRDLRRRKVFRRTYRMEEGCFDKLADLLRPILERNDFYARKRTRHGAVPVKHRLAVALRILAGASYMDVAVLFGIAKETVFHVLWEVVDAINNTPEVGPFFFPQTVEECARQAKEWEAKSTGGAISGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSELSRAVARLPPGYYMLGDAAYPLSDQLLTPYPGKLLPRDQDAYNFYLSQLRVKIEQAFGILV 334          
BLAST of mRNA_S-dermatodea_contig12874.1753.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 2.830e-40
Identity = 94/218 (43.12%), Postives = 121/218 (55.50%), Query Frame = 1
Query:   49 KARRKSLVRRQRRAFREHIKPMLADGTFSKRFRMDYTSFRILYQLLRPVLERNYNAGLGRNGTIPGEWALASTLRWLAGGSIWEAMDGPVMAHSTAYAKAKLVCLAINKCAALRVRWPKTQEALAQAAAGFEARSSSGVVKNSVGAADGLLIRRRKPRTKEHIAPDRFYSGHKKAVGMNMQAICDAQYRFIAVACTCPGSTNDRTAWGLSGFDRAVEQ 702
            K  R +LV R+RR F  HIKP+L D TFS RFRM+Y  FR+L   LRP L +N   GL R G IP E+ +A TLRWLAGGSI+E MDG V+A STAY     V  A+N C  L  +WP             EAR    VV+  VGA DGL +R  KP  KE   P+ +Y+GH+K V +   A   ++   +    T   ++ D     +S +  A+EQ
Sbjct:   43 KRNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWP-------------EARMD--VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKGVVVGDAAYGASERVVVPFPGTSLSASQDACNNYVSQYRMAIEQ 245          
BLAST of mRNA_S-dermatodea_contig12874.1753.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 7.580e-40
Identity = 71/134 (52.99%), Postives = 91/134 (67.91%), Query Frame = 1
Query:  463 VVKNSVGAADGLLIRRRKPRTKEHIAPDRFYSGHKKAVGMNMQAICDAQYRFIAVACTCPGSTNDRTAWGLSGFDRAVEQLPYPYVITGDAAYAPSEKMLVPYPGTGLETYADAYNYFQSQSRMPIEQTFGIFV 864
            VV+  VGA DGL +R  KP  KE   P+ +Y+GHK   GMN QA+CDAQYR +A   +CPGS NDRTA+  + FD+ +  LP  + + GDAAY  SE+++VP+PGT L    DA NY+ SQ RM IEQT+GI V
Sbjct:   17 VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 150          
BLAST of mRNA_S-dermatodea_contig12874.1753.1 vs. uniprot
Match: A0A6H5JHK3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK3_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.780e-39
Identity = 97/259 (37.45%), Postives = 141/259 (54.44%), Query Frame = 1
Query:   97 EHIKPMLADGTFSKRFRMDYTSFRILYQLLRPVLERN--YNAGLGRNGTIPGEWALASTLRWLAGGSIWEAMDGPVMAHSTAYAKAKLVCLAINKCAALRVRW-PKTQEALAQAAAGFEARSSSGVVKNSVGAADGLLIRRRKPRTKEHIAPDRFYSGHKKAVGMNMQAICDAQYRFIAVACTCPGSTNDRTAWGLSGFDRAVEQLPYPYVITGDAAYAPSEKMLVPYPGTGLETYADAYNYFQSQSRMPIEQTFGIFV 864
            EH++ +   G F + +RM+  SF  L +LLRP LE N  Y     R+G +P +  LA  LR LAG S  +      +A  T +     V  AIN    +   + P+T++  A+ A  +EA+S+ GV    V A DGL ++   P   +      ++SG+K   G+N+QA CDA YRF +++    G+TND TAW  S    +V +LP  Y + GDAAY  S+ +L PYPG  L    D++N+  SQ R+ IEQ +GI V
Sbjct:   74 EHVRDIKRRGVFRRMYRMEEHSFNKLAELLRPFLESNDFYARKRTRSGAVPVKIRLAVALRMLAGASYLDVAVLFGIAKETVFHVLWEVVDAINNTPEVGAFFFPQTRDDCARQAKEWEAKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGYYVLGDAAYPLSDHLLTPYPGKLLPRDEDSFNFHLSQLRVKIEQAYGILV 332          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12874.1753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3F2_9PHAE3.380e-8051.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE2.320e-7951.66DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE5.860e-7253.39DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE3.360e-5944.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K540_9PHAE3.360e-5140.37DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JEM6_9PHAE9.780e-4241.80DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JUE6_9PHAE2.600e-4139.00DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE2.830e-4043.12DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE7.580e-4052.99DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JHK3_9PHAE1.780e-3937.45DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12874contigS-dermatodea_contig12874:607..1876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue1.9e-28
Seed eggNOG ortholog4792.ETI46469
EggNOG free text desc.nuclease activity
EggNOG OGs3QI3U@4776,KOG4585@1,KOG4585@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons2
Model size867
Cds size867
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924265.4476247-CDS-S-dermatodea_contig12874:606..8821622924265.4476247-CDS-S-dermatodea_contig12874:606..882Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12874 607..882 -
1694079136.0850277-CDS-S-dermatodea_contig12874:606..8821694079136.0850277-CDS-S-dermatodea_contig12874:606..882Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12874 607..882 -
1622924265.462434-CDS-S-dermatodea_contig12874:1285..18761622924265.462434-CDS-S-dermatodea_contig12874:1285..1876Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12874 1286..1876 -
1694079136.0947216-CDS-S-dermatodea_contig12874:1285..18761694079136.0947216-CDS-S-dermatodea_contig12874:1285..1876Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12874 1286..1876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12874.1753.1prot_S-dermatodea_contig12874.1753.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12874 607..1876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12874.1753.1

>prot_S-dermatodea_contig12874.1753.1 ID=prot_S-dermatodea_contig12874.1753.1|Name=mRNA_S-dermatodea_contig12874.1753.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=289bp
IKTHRNVRAALLAKVVKARRKSLVRRQRRAFREHIKPMLADGTFSKRFRM
DYTSFRILYQLLRPVLERNYNAGLGRNGTIPGEWALASTLRWLAGGSIWE
AMDGPVMAHSTAYAKAKLVCLAINKCAALRVRWPKTQEALAQAAAGFEAR
SSSGVVKNSVGAADGLLIRRRKPRTKEHIAPDRFYSGHKKAVGMNMQAIC
DAQYRFIAVACTCPGSTNDRTAWGLSGFDRAVEQLPYPYVITGDAAYAPS
EKMLVPYPGTGLETYADAYNYFQSQSRMPIEQTFGIFVS
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mRNA from alignment at S-dermatodea_contig12874:607..1876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12874.1753.1 ID=mRNA_S-dermatodea_contig12874.1753.1|Name=mRNA_S-dermatodea_contig12874.1753.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1270bp|location=Sequence derived from alignment at S-dermatodea_contig12874:607..1876- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCAAGACGCACCGAAATGTGCGAGCGGCACTTCTGGCGAAAGTTGTGAA AGCCAGGCGGAAGAGTCTCGTGAGACGACAGCGCAGAGCATTCCGTGAGC ACATCAAGCCCATGCTTGCGGATGGCACGTTCAGTAAGCGCTTCCGCATG GACTACACATCCTTCCGGATTCTATACCAGCTGCTGCGGCCGGTTTTGGA GCGTAACTACAATGCTGGACTCGGGCGCAATGGGACCATCCCTGGAGAGT GGGCCCTGGCTTCGACGCTTCGCTGGTTAGCTGGCGGGTCTATCTGGGAG GCCATGGATGGCCCTGTGATGGCACACAGCACCGCGTACGCGAAGGCTAA ACTCGTGTGCCTTGCGATCAACAAGTGTGCGGCCTTGCGGGTGAGGTGGC CAAAAACACAGGAGGCCCTCGCCCAGGCTGCGGCAGGTTTCGAGGCTCGC AGCAGTTCTGGGGTCGTGAAGAACAGCGTGGGTGCGGCGGACGGCCTCTT GATTCGTCGGAGGAAGCCCCGCACGAAGGAGCACATCGCCCCTGACCGGT TCTACTCCGGGCACAAGAAGGCAGTGGGGATGAACATGCAGGTGTGTCCA GTTGTGCGCCAGTTTCTGCGGCTTTCAAAGTCAATATGCAGCACGTAGTA GTACTTGTGTGCTGTAATCGGCTGGCGGCCAAAAAAAAAACTACTCTATC TGTAAGATGTTTTTACAGCAGAAGAATGCATTCAGGACTGTTTTGTTTCC GCGGCTTATCTGCCACAAGGCACCGCTGTGCACTCATCATATCTACAGCA GTGTTGCAAGTGTTTTACGCCGAACTAAGACTAGATGGTGGATCCTCCTT GTTGTATTCGAGCGGTGGTGCGTGTGTATCTGTCTCCGCAAGAACCGTAC TATTGTAGTCCTGACTGTTGGCGAAAAACATACTTGCACCAATGACAGGT GTCCTTCTGCCTTCTTTTATTGCCGTTGCCGTGTGCGTTATCAGGCAATC TGCGACGCGCAGTACCGTTTCATCGCCGTTGCCTGTACCTGCCCTGGAAG CACGAACGACAGGACTGCGTGGGGATTGTCGGGGTTTGACCGTGCAGTCG AACAGCTACCCTACCCCTACGTGATCACGGGCGACGCTGCGTACGCCCCC TCGGAGAAGATGCTCGTGCCTTACCCTGGTACGGGGCTCGAGACGTATGC GGACGCGTACAACTACTTCCAGTCACAGTCAAGGATGCCCATCGAGCAGA CGTTCGGAATATTTGTGAGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12874:607..1876-

>mRNA_S-dermatodea_contig12874.1753.1 ID=mRNA_S-dermatodea_contig12874.1753.1|Name=mRNA_S-dermatodea_contig12874.1753.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at S-dermatodea_contig12874:607..1876- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCAAGACGCACCGAAATGTGCGAGCGGCACTTCTGGCGAAAGTTGTGAA
AGCCAGGCGGAAGAGTCTCGTGAGACGACAGCGCAGAGCATTCCGTGAGC
ACATCAAGCCCATGCTTGCGGATGGCACGTTCAGTAAGCGCTTCCGCATG
GACTACACATCCTTCCGGATTCTATACCAGCTGCTGCGGCCGGTTTTGGA
GCGTAACTACAATGCTGGACTCGGGCGCAATGGGACCATCCCTGGAGAGT
GGGCCCTGGCTTCGACGCTTCGCTGGTTAGCTGGCGGGTCTATCTGGGAG
GCCATGGATGGCCCTGTGATGGCACACAGCACCGCGTACGCGAAGGCTAA
ACTCGTGTGCCTTGCGATCAACAAGTGTGCGGCCTTGCGGGTGAGGTGGC
CAAAAACACAGGAGGCCCTCGCCCAGGCTGCGGCAGGTTTCGAGGCTCGC
AGCAGTTCTGGGGTCGTGAAGAACAGCGTGGGTGCGGCGGACGGCCTCTT
GATTCGTCGGAGGAAGCCCCGCACGAAGGAGCACATCGCCCCTGACCGGT
TCTACTCCGGGCACAAGAAGGCAGTGGGGATGAACATGCAGATCAAGACG
CACCGAAATGTGCGAGCGGCACTTCTGGCGAAAGTTGTGAAAGCCAGGCG
GAAGAGTCTCGTGAGACGACAGCGCAGAGCATTCCGTGAGCACATCAAGC
CCATGCTTGCGGATGGCACGTTCAGTAAGCGCTTCCGCATGGACTACACA
TCCTTCCGGATTCTATACCAGCTGCTGCGGCCGGTTTTGGAGCGTAACTA
CAATGCTGGACTCGGGCGCAATGGGACCATCCCTGGAGAGTGGGCCCTGG
CTTCGACGCTTCGCTGGTTAGCTGGCGGGTCTATCTGGGAGGCCATGGAT
GGCCCTGTGATGGCACACAGCACCGCGTACGCGAAGGCTAAACTCGTGTG
CCTTGCGATCAACAAGTGTGCGGCCTTGCGGGTGAGGTGGCCAAAAACAC
AGGAGGCCCTCGCCCAGGCTGCGGCAGGTTTCGAGGCTCGCAGCAGTTCT
GGGGTCGTGAAGAACAGCGTGGGTGCGGCGGACGGCCTCTTGATTCGTCG
GAGGAAGCCCCGCACGAAGGAGCACATCGCCCCTGACCGGTTCTACTCCG
GGCACAAGAAGGCAGTGGGGATGAACATGCAGGCAATCTGCGACGCGCAG
TACCGTTTCATCGCCGTTGCCTGTACCTGCCCTGGAAGCACGAACGACAG
GACTGCGTGGGGATTGTCGGGGTTTGACCGTGCAGTCGAACAGCTACCCT
ACCCCTACGTGATCACGGGCGACGCTGCGTACGCCCCCTCGGAGAAGATG
CTCGTGCCTTACCCTGGTACGGGGCTCGAGACGTATGCGGACGCGTACAA
CTACTTCCAGTCACAGTCAAGGATGCCCATCGAGCAGACGTTCGGAATAT
TTGTGAGTGCAATCTGCGACGCGCAGTACCGTTTCATCGCCGTTGCCTGT
ACCTGCCCTGGAAGCACGAACGACAGGACTGCGTGGGGATTGTCGGGGTT
TGACCGTGCAGTCGAACAGCTACCCTACCCCTACGTGATCACGGGCGACG
CTGCGTACGCCCCCTCGGAGAAGATGCTCGTGCCTTACCCTGGTACGGGG
CTCGAGACGTATGCGGACGCGTACAACTACTTCCAGTCACAGTCAAGGAT
GCCCATCGAGCAGACGTTCGGAATATTTGTGAGT
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