mRNA_S-dermatodea_contig12871.1752.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12871.1752.1
Unique NamemRNA_S-dermatodea_contig12871.1752.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12871.1752.1 vs. uniprot
Match: A0A6H5KRN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN6_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 7.420e-15
Identity = 98/205 (47.80%), Postives = 107/205 (52.20%), Query Frame = 1 
Query:   52 CNSIGCPNGFTPIPKAWEVECRGDTCTVDQCCEAFCSYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGESRQNSNQPDPNKKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAFCSYHAXXXXXXXXXXXXXXXXXXXXXXXXXXXAAANDGNQNNNQPDPNKKYCNSIGCPGGFTPIPNAFEVECNGDECKVDQCCEA 666
            CNSIGCP+GFTPIP AWEVEC GD+C V  CCEAF                  XXXXXXXXXXXXX   G +R N++                                        E  C    XXXXXXXXXXXX   XXXXXXXXXXX                   YCNSIGCPGG+TPIPNA+EVEC+GD C+V QCCEA
Sbjct:   16 CNSIGCPDGFTPIPYAWEVEC-GDSCDVATCCEAF------------------XXXXXXXXXXXXXEDAGTTRCNNDN------------------------------------CTTEQCCVSGNXXXXXXXXXXXXGGNXXXXXXXXXXXVL-----------------YCNSIGCPGGYTPIPNAWEVECSGDSCEVSQCCEA 148
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BLAST of mRNA_S-dermatodea_contig12871.1752.1 vs. uniprot
Match: A0A6H5JPS1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS1_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.860e-13
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:  556 KKYCNSIGCPGGFTPIPNAFEVECNGDECKVDQCCEA 666
            K YCNSIGCPGG+TPIPNA+EVEC+ D C+V QCCEA
Sbjct:    5 KTYCNSIGCPGGYTPIPNAWEVECDDDPCEVSQCCEA 41
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BLAST of mRNA_S-dermatodea_contig12871.1752.1 vs. uniprot
Match: D7G5E9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E9_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.280e-10
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:  562 YCNSIGCPGGFTPIPNAFEVECNGDECKVDQCCEA 666
            YCNSIGCPGG+TPIPNA+EVEC  D C+V QCCEA
Sbjct:  128 YCNSIGCPGGYTPIPNAWEVECYDDSCEVSQCCEA 162
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BLAST of mRNA_S-dermatodea_contig12871.1752.1 vs. uniprot
Match: D8LCY4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY4_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.020e-7
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:  565 CNSIGCPGGFTPIPNAFEVECNGDECKVDQCCEAF 669
            CNSIGCPGG+TPIP A+EVEC GD C V  CCEAF
Sbjct:   50 CNSIGCPGGYTPIPYAWEVEC-GDSCDVATCCEAF 83
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12871.1752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KRN6_9PHAE7.420e-1547.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPS1_9PHAE8.860e-1378.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G5E9_ECTSI2.280e-1080.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCY4_ECTSI3.020e-777.14Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12871contigS-dermatodea_contig12871:4748..6230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size765
Cds size765
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12871.1752.1prot_S-dermatodea_contig12871.1752.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12871 4748..6230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924265.3953414-CDS-S-dermatodea_contig12871:4747..50201622924265.3953414-CDS-S-dermatodea_contig12871:4747..5020Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12871 4748..5020 +
1694079136.060347-CDS-S-dermatodea_contig12871:4747..50201694079136.060347-CDS-S-dermatodea_contig12871:4747..5020Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12871 4748..5020 +
1622924265.4115803-CDS-S-dermatodea_contig12871:5364..56051622924265.4115803-CDS-S-dermatodea_contig12871:5364..5605Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12871 5365..5605 +
1694079136.0684385-CDS-S-dermatodea_contig12871:5364..56051694079136.0684385-CDS-S-dermatodea_contig12871:5364..5605Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12871 5365..5605 +
1622924265.4198768-CDS-S-dermatodea_contig12871:5979..62301622924265.4198768-CDS-S-dermatodea_contig12871:5979..6230Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12871 5980..6230 +
1694079136.0764456-CDS-S-dermatodea_contig12871:5979..62301694079136.0764456-CDS-S-dermatodea_contig12871:5979..6230Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12871 5980..6230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12871.1752.1

>prot_S-dermatodea_contig12871.1752.1 ID=prot_S-dermatodea_contig12871.1752.1|Name=mRNA_S-dermatodea_contig12871.1752.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=255bp
STDGDNQNDGPGQSKKACNSIGCPNGFTPIPKAWEVECRGDTCTVDQCCE
AFCSYHACPNNFVPVKDASEIRCNEDTCTTGQCCERGESRQNSNQPDPNK
KYCNSIGCPGGFTPIPNAFEVECNGDGCKVNQCCEAFCSYHACPSNFTPV
KDASDIRCNNNVCTTGQCCAAANDGNQNNNQPDPNKKYCNSIGCPGGFTP
IPNAFEVECNGDECKVDQCCEAFCSYHACPSNFIPVKDASEIRCNNNVCT
TGQCC
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mRNA from alignment at S-dermatodea_contig12871:4748..6230+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12871.1752.1 ID=mRNA_S-dermatodea_contig12871.1752.1|Name=mRNA_S-dermatodea_contig12871.1752.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1483bp|location=Sequence derived from alignment at S-dermatodea_contig12871:4748..6230+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGACAGATGGTGACAATCAAAACGACGGCCCCGGCCAAAGCAAAAAGGC
CTGCAACTCGATAGGCTGCCCCAACGGCTTCACTCCGATCCCGAAAGCGT
GGGAGGTAGAGTGCAGAGGTGACACGTGCACGGTGGACCAGTGCTGCGAG
GCATTCTGCTCCTACCACGCATGCCCAAACAACTTCGTCCCCGTAAAGGA
CGCCTCCGAAATCAGGTGCAACGAGGACACGTGTACCACCGGCCAGTGCT
GCGAGAGGGGTGAGTCCAGACAAGTCTTGGGCAGGACACCACAATTGGCG
TTTTGGTGGCATTACCCTATCCGACCGACGAATAGTTTCAGGCACACGAC
GACTGGGGCGTGCCATGGTCGAGAGGGAGATGCCCTTCCTAGAGCTTCGA
GCTATTGCTACTGAAGGGGTAGTGACATTGTTCAACACGATAGCTGTGAG
CCACAAGAAAATTTAGGCCAACGGTTTCGGCTGTGATGTGGGCCAAGGTT
GTCACATTTGAACGGACCCCTTGGGACTATCTTTCGCTCGTGGACACTCC
CTGGTACTGACTCGTTGCCAAAATCGGCCACGCGCTCCGCGCAGGCACAG
CAAATGATGGCAACCAGAACAGCAACCAGCCGGACCCCAACAAGAAGTAC
TGCAACTCCATTGGCTGCCCCGGCGGCTTCACCCCGATCCCAAACGCGTT
CGAGGTAGAGTGCAATGGTGACGGGTGCAAGGTGAACCAGTGCTGCGAAG
CCTTTTGCTCGTACCATGCGTGCCCCAGCAATTTCACCCCTGTGAAGGAC
GCATCCGATATCAGGTGCAACAACAACGTGTGCACCACCGGCCAGTGCTG
CGCTGCCGGTGAGTCTCGACCATTATTGCCCAGCACGCAATGGGGGGCAT
TTGTTTTACTTCCTCTTACCGCCACCTGTGTTGCCATCCTGGGCGATGAG
GACGTTTATTCACTGAGAAGGTCGGGGGGCGAGTTTTCACTTTGGGCTCG
AGGAGGTAGCGCGTGTGCCTGGATCTTCGAATTTTTTCTACTGACTCGCG
GAACACGTTCGTGACTTCATGCACCCGAATTGCGGCAAGCCCAAACCATC
CTCTGAGGGTCGATCGTTGACGCCGTGATGTTGTCCATATATTTGGCCGA
GGGGTCCCCTGGGCACCTCTTGCATTCATGGACTCACTGATACATTACAT
TTTCGTAAATCGTCCATAACCCAAAGGTTCAGCGAATGATGGCAACCAGA
ACAACAACCAGCCGGACCCCAACAAGAAGTACTGCAACTCCATTGGCTGC
CCGGGCGGCTTCACACCGATCCCAAACGCCTTCGAGGTAGAGTGCAATGG
TGACGAGTGCAAGGTGGACCAGTGCTGCGAAGCCTTCTGCTCGTACCACG
CGTGCCCCAGCAACTTCATCCCTGTGAAGGACGCATCCGAGATCAGGTGC
AACAACAACGTGTGCACCACCGGCCAGTGCTGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12871:4748..6230+

>mRNA_S-dermatodea_contig12871.1752.1 ID=mRNA_S-dermatodea_contig12871.1752.1|Name=mRNA_S-dermatodea_contig12871.1752.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1530bp|location=Sequence derived from alignment at S-dermatodea_contig12871:4748..6230+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGACAGATGGTGACAATCAAAACGACGGCCCCGGCCAAAGCAAAAAGGC
CTGCAACTCGATAGGCTGCCCCAACGGCTTCACTCCGATCCCGAAAGCGT
GGGAGGTAGAGTGCAGAGGTGACACGTGCACGGTGGACCAGTGCTGCGAG
GCATTCTGCTCCTACCACGCATGCCCAAACAACTTCGTCCCCGTAAAGGA
CGCCTCCGAAATCAGGTGCAACGAGGACACGTGTACCACCGGCCAGTGCT
GCGAGAGGGGTGAGTCCAGACAATCGACAGATGGTGACAATCAAAACGAC
GGCCCCGGCCAAAGCAAAAAGGCCTGCAACTCGATAGGCTGCCCCAACGG
CTTCACTCCGATCCCGAAAGCGTGGGAGGTAGAGTGCAGAGGTGACACGT
GCACGGTGGACCAGTGCTGCGAGGCATTCTGCTCCTACCACGCATGCCCA
AACAACTTCGTCCCCGTAAAGGACGCCTCCGAAATCAGGTGCAACGAGGA
CACGTGTACCACCGGCCAGTGCTGCGAGAGGGGTGAGTCCAGACAAAACA
GCAACCAGCCGGACCCCAACAAGAAGTACTGCAACTCCATTGGCTGCCCC
GGCGGCTTCACCCCGATCCCAAACGCGTTCGAGGTAGAGTGCAATGGTGA
CGGGTGCAAGGTGAACCAGTGCTGCGAAGCCTTTTGCTCGTACCATGCGT
GCCCCAGCAATTTCACCCCTGTGAAGGACGCATCCGATATCAGGTGCAAC
AACAACGTGTGCACCACCGGCCAGTGCTGCGCTGCCGAACAGCAACCAGC
CGGACCCCAACAAGAAGTACTGCAACTCCATTGGCTGCCCCGGCGGCTTC
ACCCCGATCCCAAACGCGTTCGAGGTAGAGTGCAATGGTGACGGGTGCAA
GGTGAACCAGTGCTGCGAAGCCTTTTGCTCGTACCATGCGTGCCCCAGCA
ATTTCACCCCTGTGAAGGACGCATCCGATATCAGGTGCAACAACAACGTG
TGCACCACCGGCCAGTGCTGCGCTGCCGCGAATGATGGCAACCAGAACAA
CAACCAGCCGGACCCCAACAAGAAGTACTGCAACTCCATTGGCTGCCCGG
GCGGCTTCACACCGATCCCAAACGCCTTCGAGGTAGAGTGCAATGGTGAC
GAGTGCAAGGTGGACCAGTGCTGCGAAGCCTTCTGCTCGTACCACGCGTG
CCCCAGCAACTTCATCCCTGTGAAGGACGCATCCGAGATCAGGTGCAACA
ACAACGTGTGCACCACCGGCCAGTGCTGCCGAATGATGGCAACCAGAACA
ACAACCAGCCGGACCCCAACAAGAAGTACTGCAACTCCATTGGCTGCCCG
GGCGGCTTCACACCGATCCCAAACGCCTTCGAGGTAGAGTGCAATGGTGA
CGAGTGCAAGGTGGACCAGTGCTGCGAAGCCTTCTGCTCGTACCACGCGT
GCCCCAGCAACTTCATCCCTGTGAAGGACGCATCCGAGATCAGGTGCAAC
AACAACGTGTGCACCACCGGCCAGTGCTGC
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