mRNA_S-dermatodea_contig12863.1750.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12863.1750.1
Unique NamemRNA_S-dermatodea_contig12863.1750.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12863.1750.1 vs. uniprot
Match: D7G6D9_ECTSI (Arginyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6D9_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 1.760e-107
Identity = 211/420 (50.24%), Postives = 259/420 (61.67%), Query Frame = 1 
Query:    1 QVSVHGDEPSEVTINSFQRFLVDSPLIRETVGGTFIKATKPPPCGLDDAFAEDEVGDVRGAGDALQTDSTEMTDGDESLSVPYGSYHQLYRIDGRLVAVGVVDILPTCLSSVYCFYDPDYRALALGKLAALMEIEFVKEARALRPTLRDYYMGFYIHTCPKMSYKGSFTPSFLLCPERLSWVPIEVCRPVLDRRKYACLSDLVPPP---ALPAWVQSG--AGSAGDTSRNGGHHGGRGXXXXXXXXXXSSRTPADVESQQXXXXXXXXXXXXXXXEAVGAPATSSSTASSSLSPERRVVGRVR-RDARPTSARPPRDGGNATNIRDAH---------------------------------SDDLSIMNEVPLMLGRPAFPVSLAALAPHAQIIVRDTLRTYVATVGPDLAQRVLLKLYS 1143
            QVSVHGDEPSEVT + F+RFLVDSPLIRET+GG  ++   P         +   VGD    G+A  ++S+EMT+G +SLSVPYGSYHQLYRIDG+L+AVGVVD+LP CLSSVYCFYDPDYRALALGKL AL E EF++EA  +RP LRDYYMGFYIHTCPKMSYKGS+TPSFLLCPERL+WVP+E+CRPVLD  KYACLS L+  P   A P+ V SG  AG    T R        G          SS  PA                         +P++ S +  SSLSP+RR VG+ R R+   +SAR  + G +A   R                                    +D+ S +N++PLM+G P+FPV+ +AL PH+Q +VRD L  YVATVG DLA+ V+LKL+ 
Sbjct:  494 QVSVHGDEPSEVTPDQFRRFLVDSPLIRETIGGASVRPRNPSFRRGPTGGSPFHVGDCGVEGNA-DSESSEMTEGRDSLSVPYGSYHQLYRIDGKLIAVGVVDVLPKCLSSVYCFYDPDYRALALGKLTALKETEFIREASVVRPALRDYYMGFYIHTCPKMSYKGSYTPSFLLCPERLTWVPLELCRPVLDVHKYACLSSLLGSPVPAARPSQVISGSDAGVGNGTQRRR-----SGSMGSVGGGFGSSGRPAAGGRFPQRDAADSEGARGSRATGQTSPSSGSFSPLSSLSPDRREVGQGRSRNVYSSSARSIQAGESAATSRFGRETRGEMMGIAAAAAAARRFXXXXXXXXXXXXXXADEASGINDIPLMVGEPSFPVNFSALTPHSQALVRDVLSKYVATVGSDLAKNVVLKLHG 907
[Close]
BLAST of mRNA_S-dermatodea_contig12863.1750.1 vs. uniprot
Match: A0A836CDE0_9STRA (Arginine-tRNA-protein transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE0_9STRA)

HSP 1 Score: 217 bits (552), Expect = 8.170e-59
Identity = 110/204 (53.92%), Postives = 141/204 (69.12%), Query Frame = 1 
Query:    1 QVSVHGDEPSEVTINSFQRFLVDSPLIRETVGGTFIKATKPPPCGLDDAFAEDEVGDVRGAGDALQTDSTEMTDGDESLSVPYGSYHQLYRIDGRLVAVGVVDILPTCLSSVYCFYDPDYRALALGKLAALMEIEFVKEARALRPTLRDYYMGFYIHTCPKMSYKGSFTPSFLLCPERLSWVPIEVCRPVLDRRKYACLSDLVP 612
            QV+VHGD+P+E T   F+RFLVD PL+ ++               LD     D     +G       +++  T+ DE+ SVP GSYHQLYRI+GRL+AVGVVDILP CLSSVYCFYDP YRAL+LGKL A  EIE+V+ A A+RP  + YY+G+YIH+C KM YKG++ PS LLCPER  WVP+ +C+P+LDR+ Y  LSDL+P
Sbjct:  269 QVAVHGDKPNECTPKQFKRFLVDGPLVHDSQ--------------LD---RHDSAVQAQGDDSDANANASAGTEYDEA-SVPCGSYHQLYRINGRLIAVGVVDILPRCLSSVYCFYDPAYRALSLGKLTAFKEIEWVQAASAVRPNFQYYYLGYYIHSCEKMRYKGNYNPSDLLCPERREWVPLALCKPLLDRQSYGRLSDLLP 454
[Close]
BLAST of mRNA_S-dermatodea_contig12863.1750.1 vs. uniprot
Match: A0A7S3UVS4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVS4_HETAK)

HSP 1 Score: 191 bits (484), Expect = 1.860e-51
Identity = 103/200 (51.50%), Postives = 123/200 (61.50%), Query Frame = 1 
Query:    1 QVSVHGDEPSEVTINSFQRFLVDSPLIRETVGGTFIKATKPPPCGLDDAFAEDEVGDVRGAGDALQTDSTEMTDGDESLSVPYGSYHQLYRIDGRLVAVGVVDILPTCLSSVYCFYDPDYRALALGKLAALMEIEFVKEARAL-RPTLRDYYMGFYIHTCPKMSYKGSFTPSFLLCPERLSWVPIEVCRPVLDRRKYACL 597
            Q+ VHGD+  +VT  SF RFLV+SPL  +                  +A  +D  G   GAG+            D  + VP+GSYH LYR DG LVAVGVVD+LP CLSSVY FYDPDYR L LGKL AL EIE+V+ A A  RP LR YY+G+YIH CPKM YKG + PS LLCPE   WVP+   +P+L+ RKY  L
Sbjct:    3 QMRVHGDKEEDVTEKSFTRFLVNSPLFNQNGQNPVAP----------EAREKDGGGGEEGAGEPFPVT-------DALVRVPFGSYHMLYRHDGALVAVGVVDVLPRCLSSVYAFYDPDYRHLVLGKLTALKEIEWVRRAAAAARPGLRFYYLGYYIHDCPKMRYKGEYAPSALLCPETYRWVPLTGAQPLLNERKYCRL 185
[Close]
BLAST of mRNA_S-dermatodea_contig12863.1750.1 vs. uniprot
Match: V4N4Z4_EUTSA (Arginyl-tRNA--protein transferase n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4N4Z4_EUTSA)

HSP 1 Score: 185 bits (469), Expect = 9.150e-49
Identity = 96/202 (47.52%), Postives = 121/202 (59.90%), Query Frame = 1 
Query:    1 QVSVHGDEPSEVTINSFQRFLVDSPLIRETVGGTFIKATKPPPCGLDDAFAEDEVGDVRGAGDALQTDSTEMTDGDESLSVPYGSYHQLYRIDGRLVAVGVVDILPTCLSSVYCFYDPDYRALALGKLAALMEIEFVKEARALRPTLRDYYMGFYIHTCPKMSYKGSFTPSFLLCPERLSWVPIEVCRPVLDRRKYACLSDL 606
            Q+ VH D+P  V  +S++RFLVDSPLI     G      K PPCG                                     +GS+HQ YR+DGRL+AVGVVDILP CLSSVY F+DPDY  L+LGK +AL EI +V+E +   PTL+ YY+G+YIH+C KM YK ++ PS LLCP R  WVP EV RP+LD++ Y  LSD+
Sbjct:   95 QLKVHNDKPGHVVESSYRRFLVDSPLIYVQPSGD----EKVPPCG-------------------------------------FGSFHQQYRVDGRLIAVGVVDILPKCLSSVYLFWDPDYAFLSLGKYSALQEINWVRENQVHCPTLQYYYLGYYIHSCSKMRYKAAYRPSELLCPLRFRWVPFEVARPLLDKKPYVILSDI 255
[Close]
BLAST of mRNA_S-dermatodea_contig12863.1750.1 vs. uniprot
Match: A0A0D3EHK3_BRAOL (Arginyl-tRNA--protein transferase n=6 Tax=Brassica TaxID=3705 RepID=A0A0D3EHK3_BRAOL)

HSP 1 Score: 187 bits (475), Expect = 9.850e-48
Identity = 97/203 (47.78%), Postives = 125/203 (61.58%), Query Frame = 1 
Query:    1 QVSVHGDEPSEVTINSFQRFLVDSPLIR-ETVGGTFIKATKPPPCGLDDAFAEDEVGDVRGAGDALQTDSTEMTDGDESLSVPYGSYHQLYRIDGRLVAVGVVDILPTCLSSVYCFYDPDYRALALGKLAALMEIEFVKEARALRPTLRDYYMGFYIHTCPKMSYKGSFTPSFLLCPERLSWVPIEVCRPVLDRRKYACLSDL 606
            Q+ VH D PS V  +S++RFLVDSPLI  +  GG   +    PPCG                                     +GS+HQ YR+DGRLVAVGVVDILP CLSSVY F+DPDY  L+LGK +A+ EI +V+E++A  P+L  YY+G+YIH+C KM YK ++ PS LLCP R  WVP EV RP+LD+++Y  LSD+
Sbjct:  317 QLKVHKDNPSRVVESSYKRFLVDSPLIYVQPSGGGDDEEKVVPPCG-------------------------------------FGSFHQQYRVDGRLVAVGVVDILPKCLSSVYLFWDPDYAFLSLGKYSAIQEINWVRESQARCPSLEYYYLGYYIHSCSKMRYKAAYRPSELLCPLRFKWVPFEVARPLLDKKRYVILSDI 482
[Close]
BLAST of mRNA_S-dermatodea_contig12863.1750.1 vs. uniprot
Match: UPI00053A3EFF (arginyl-tRNA--protein transferase 1-like isoform X2 n=7 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A3EFF)

HSP 1 Score: 185 bits (470), Expect = 9.140e-47
Identity = 96/202 (47.52%), Postives = 123/202 (60.89%), Query Frame = 1 
Query:    1 QVSVHGDEPSEVTINSFQRFLVDSPLIRETVGGTFIKATKPPPCGLDDAFAEDEVGDVRGAGDALQTDSTEMTDGDESLSVPYGSYHQLYRIDGRLVAVGVVDILPTCLSSVYCFYDPDYRALALGKLAALMEIEFVKEARALRPTLRDYYMGFYIHTCPKMSYKGSFTPSFLLCPERLSWVPIEVCRPVLDRRKYACLSDL 606
            Q+ VH D+P  VT +S++RFLVDSPLI     G      K PPCG                                     +GS+HQ YR+DGRL+AVGVVDILP CLSSVY F+DPDY  L+LGK +A+ EI +VKE +A  P+++ YY+G+YIH+C KM YK ++ PS LLCP R  WVP EV RP+LD++ Y  LSD+
Sbjct:  329 QLKVHNDKPGHVTESSYRRFLVDSPLIYVQHSGD----GKVPPCG-------------------------------------FGSFHQQYRVDGRLIAVGVVDILPKCLSSVYLFWDPDYAFLSLGKYSAMQEINWVKENQAHCPSVQYYYLGYYIHSCNKMRYKAAYRPSELLCPLRFQWVPFEVARPMLDKKPYVILSDI 489
[Close]
BLAST of mRNA_S-dermatodea_contig12863.1750.1 vs. uniprot
Match: M4CY30_BRARP (Arginyl-tRNA--protein transferase n=7 Tax=Brassica TaxID=3705 RepID=M4CY30_BRARP)

HSP 1 Score: 184 bits (468), Expect = 1.450e-46
Identity = 96/202 (47.52%), Postives = 122/202 (60.40%), Query Frame = 1 
Query:    1 QVSVHGDEPSEVTINSFQRFLVDSPLIRETVGGTFIKATKPPPCGLDDAFAEDEVGDVRGAGDALQTDSTEMTDGDESLSVPYGSYHQLYRIDGRLVAVGVVDILPTCLSSVYCFYDPDYRALALGKLAALMEIEFVKEARALRPTLRDYYMGFYIHTCPKMSYKGSFTPSFLLCPERLSWVPIEVCRPVLDRRKYACLSDL 606
            Q+ VH D PS V  +S++RFLVDSPLI     G   +   PP CG                                     +GS+HQ YR+DGRLVAVGVVDILP CLSSVY F+DPDY  L+LGK +A+ EI +V+E +A  P+L  YY+G+YIH+C KM YK ++ PS LLCP R  WVP EV RP+LD+++Y  LSD+
Sbjct:  311 QLKVHNDNPSHVVESSYRRFLVDSPLIYVQPSGENDEKVVPP-CG-------------------------------------FGSFHQQYRVDGRLVAVGVVDILPKCLSSVYLFWDPDYAFLSLGKYSAIQEINWVRENQARCPSLEYYYLGYYIHSCSKMRYKAAYRPSELLCPLRFKWVPFEVSRPLLDKKRYVILSDI 474
[Close]
BLAST of mRNA_S-dermatodea_contig12863.1750.1 vs. uniprot
Match: R0FE64_9BRAS (Arginyl-tRNA--protein transferase n=2 Tax=Capsella rubella TaxID=81985 RepID=R0FE64_9BRAS)

HSP 1 Score: 184 bits (466), Expect = 2.670e-46
Identity = 96/202 (47.52%), Postives = 121/202 (59.90%), Query Frame = 1 
Query:    1 QVSVHGDEPSEVTINSFQRFLVDSPLIRETVGGTFIKATKPPPCGLDDAFAEDEVGDVRGAGDALQTDSTEMTDGDESLSVPYGSYHQLYRIDGRLVAVGVVDILPTCLSSVYCFYDPDYRALALGKLAALMEIEFVKEARALRPTLRDYYMGFYIHTCPKMSYKGSFTPSFLLCPERLSWVPIEVCRPVLDRRKYACLSDL 606
            Q+ VH D+P  VT +S+ RFLVDSPLI     G      K PPCG                                     +GS+HQ YR+DGRL+AVGVVDILP CLSSVY F+DPDY  L+LGK +A+ EI +VKE +   P+L+ YY+G+YIH+C KM YK ++ PS LLCP R  WVP EV RP+LD++ Y  LSD+
Sbjct:  341 QLKVHNDKPGRVTESSYIRFLVDSPLIYVQPSGD----EKVPPCG-------------------------------------FGSFHQQYRVDGRLIAVGVVDILPKCLSSVYLFWDPDYAFLSLGKYSAMQEISWVKENQTQCPSLQYYYLGYYIHSCNKMRYKAAYRPSELLCPLRFQWVPYEVVRPMLDKKPYVILSDI 501
[Close]
BLAST of mRNA_S-dermatodea_contig12863.1750.1 vs. uniprot
Match: ATE1_ARATH (Arginyl-tRNA--protein transferase 1 n=8 Tax=Arabidopsis TaxID=3701 RepID=ATE1_ARATH)

HSP 1 Score: 183 bits (465), Expect = 4.090e-46
Identity = 96/202 (47.52%), Postives = 121/202 (59.90%), Query Frame = 1 
Query:    1 QVSVHGDEPSEVTINSFQRFLVDSPLIRETVGGTFIKATKPPPCGLDDAFAEDEVGDVRGAGDALQTDSTEMTDGDESLSVPYGSYHQLYRIDGRLVAVGVVDILPTCLSSVYCFYDPDYRALALGKLAALMEIEFVKEARALRPTLRDYYMGFYIHTCPKMSYKGSFTPSFLLCPERLSWVPIEVCRPVLDRRKYACLSDL 606
            Q+ VH D+P  V  +S++RFLVDSPLI     G      K PPCG                                     +GS+HQ YRIDGRL+AVGVVDILP CLSSVY F+DPDY  L+LGK +A+ EI +V E +A  P+L+ YY+G+YIH+C KM YK ++ PS LLCP R  WVP EV RP+LD++ Y  LSD+
Sbjct:  337 QLKVHNDKPGHVVESSYRRFLVDSPLIDVQPSGD----EKVPPCG-------------------------------------FGSFHQQYRIDGRLIAVGVVDILPKCLSSVYLFWDPDYAFLSLGKYSAIQEINWVIENQARCPSLQYYYLGYYIHSCSKMRYKAAYRPSELLCPLRFQWVPFEVARPMLDKKPYVILSDI 497
[Close]
BLAST of mRNA_S-dermatodea_contig12863.1750.1 vs. uniprot
Match: UPI00053C9678 (arginyl-tRNA--protein transferase 1 isoform X2 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C9678)

HSP 1 Score: 183 bits (464), Expect = 5.510e-46
Identity = 92/201 (45.77%), Postives = 121/201 (60.20%), Query Frame = 1 
Query:    1 QVSVHGDEPSEVTINSFQRFLVDSPLIRETVGGTFIKATKPPPCGLDDAFAEDEVGDVRGAGDALQTDSTEMTDGDESLSVPYGSYHQLYRIDGRLVAVGVVDILPTCLSSVYCFYDPDYRALALGKLAALMEIEFVKEARALRPTLRDYYMGFYIHTCPKMSYKGSFTPSFLLCPERLSWVPIEVCRPVLDRRKYACLSD 603
            Q+ VH D+P  +T +S++RFLVD+PLI     G      K PPCG                                     +GS+HQ YR+DGRL+AVGV+DILP CLSS Y F+DPDY  L++GK +AL EI ++KE  A  PTL+ YY+G+YIH+C KM YK ++ PS LLCP R  WVP E+ RP+LD+++Y  LSD
Sbjct:  344 QLRVHNDKPEHITESSYRRFLVDTPLIEVPPSGD----DKVPPCG-------------------------------------FGSFHQQYRVDGRLIAVGVIDILPKCLSSKYLFWDPDYAFLSVGKYSALQEINWIKENEAPCPTLQYYYLGYYIHSCSKMRYKAAYHPSELLCPLRYQWVPYEIARPLLDKKRYVILSD 503
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12863.1750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6D9_ECTSI1.760e-10750.24Arginyltransferase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A836CDE0_9STRA8.170e-5953.92Arginine-tRNA-protein transferase n=1 Tax=Tribonem... [more]
A0A7S3UVS4_HETAK1.860e-5151.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
V4N4Z4_EUTSA9.150e-4947.52Arginyl-tRNA--protein transferase n=2 Tax=Eutrema ... [more]
A0A0D3EHK3_BRAOL9.850e-4847.78Arginyl-tRNA--protein transferase n=6 Tax=Brassica... [more]
UPI00053A3EFF9.140e-4747.52arginyl-tRNA--protein transferase 1-like isoform X... [more]
M4CY30_BRARP1.450e-4647.52Arginyl-tRNA--protein transferase n=7 Tax=Brassica... [more]
R0FE64_9BRAS2.670e-4647.52Arginyl-tRNA--protein transferase n=2 Tax=Capsella... [more]
ATE1_ARATH4.090e-4647.52Arginyl-tRNA--protein transferase 1 n=8 Tax=Arabid... [more]
UPI00053C96785.510e-4645.77arginyl-tRNA--protein transferase 1 isoform X2 n=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12863contigS-dermatodea_contig12863:96..5797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.0
Seed ortholog evalue1e-80
Seed eggNOG ortholog2880.D7G6D9
Preferred nameate-1
KEGG rclassRC00055,RC00064
KEGG koko:K00685
KEGG ReactionR03862
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004057,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009894,GO:0009987,GO:0010029,GO:0010033,GO:0010150,GO:0016598,GO:0016740,GO:0016746,GO:0016755,GO:0019216,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0032501,GO:0032502,GO:0033993,GO:0036211,GO:0042221,GO:0043170,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0048366,GO:0048367,GO:0048580,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050832,GO:0050896,GO:0050994,GO:0051239,GO:0051603,GO:0051704,GO:0051707,GO:0065007,GO:0071704,GO:0080090,GO:0090693,GO:0097305,GO:0098542,GO:0099402,GO:0140096,GO:1900140,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:2000026
EggNOG free text desc.arginyltransferase activity
EggNOG OGsCOG2935@1,KOG1193@2759
EC2.3.2.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons4
Model size2012
Cds size933
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12863.1750.1prot_S-dermatodea_contig12863.1750.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12863 2928..4931 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924265.2152781-UTR-S-dermatodea_contig12863:95..2911622924265.2152781-UTR-S-dermatodea_contig12863:95..291Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12863 96..291 +
1694079135.9270632-UTR-S-dermatodea_contig12863:95..2911694079135.9270632-UTR-S-dermatodea_contig12863:95..291Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12863 96..291 +
1622924265.2236834-UTR-S-dermatodea_contig12863:2910..29271622924265.2236834-UTR-S-dermatodea_contig12863:2910..2927Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12863 2911..2927 +
1694079135.939196-UTR-S-dermatodea_contig12863:2910..29271694079135.939196-UTR-S-dermatodea_contig12863:2910..2927Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12863 2911..2927 +
1622924265.2598596-UTR-S-dermatodea_contig12863:4931..57971622924265.2598596-UTR-S-dermatodea_contig12863:4931..5797Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12863 4932..5797 +
1694079135.969875-UTR-S-dermatodea_contig12863:4931..57971694079135.969875-UTR-S-dermatodea_contig12863:4931..5797Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12863 4932..5797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924265.2319145-CDS-S-dermatodea_contig12863:2927..30411622924265.2319145-CDS-S-dermatodea_contig12863:2927..3041Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12863 2928..3041 +
1694079135.9468544-CDS-S-dermatodea_contig12863:2927..30411694079135.9468544-CDS-S-dermatodea_contig12863:2927..3041Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12863 2928..3041 +
1622924265.2419136-CDS-S-dermatodea_contig12863:3636..37261622924265.2419136-CDS-S-dermatodea_contig12863:3636..3726Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12863 3637..3726 +
1694079135.954149-CDS-S-dermatodea_contig12863:3636..37261694079135.954149-CDS-S-dermatodea_contig12863:3636..3726Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12863 3637..3726 +
1622924265.2501085-CDS-S-dermatodea_contig12863:4202..49311622924265.2501085-CDS-S-dermatodea_contig12863:4202..4931Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12863 4203..4931 +
1694079135.961622-CDS-S-dermatodea_contig12863:4202..49311694079135.961622-CDS-S-dermatodea_contig12863:4202..4931Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12863 4203..4931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12863.1750.1

>prot_S-dermatodea_contig12863.1750.1 ID=prot_S-dermatodea_contig12863.1750.1|Name=mRNA_S-dermatodea_contig12863.1750.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=311bp
MTDGDESLSVPYGSYHQLYRIDGRLVAVGVVDILPTCLSSVYCFYDPDYR
ALALGKLAALMEIEFVKEARALRPTLRDYYMGFYIHTCPKMSYKGSFTPS
FLLCPERLSWVPIEVCRPVLDRRKYACLSDLVPPPALPAWVQSGAGSAGD
TSRNGGHHGGRGTAGGLRGGSGSSRTPADVESQQQQHEQSTAGSNGSTGE
AVGAPATSSSTASSSLSPERRVVGRVRRDARPTSARPPRDGGNATNIRDA
HSDDLSIMNEVPLMLGRPAFPVSLAALAPHAQIIVRDTLRTYVATVGPDL
AQRVLLKLYS*
back to top

mRNA from alignment at S-dermatodea_contig12863:96..5797+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12863.1750.1 ID=mRNA_S-dermatodea_contig12863.1750.1|Name=mRNA_S-dermatodea_contig12863.1750.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5702bp|location=Sequence derived from alignment at S-dermatodea_contig12863:96..5797+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGAGCGTTCACGGTGATGAGCCATCGGAGGTGACGATTAACTCGTT
CCAGCGCTTCCTGGTGGACAGCCCCCTCATCCGCGAGACGGTGGGTGGCA
CGTTCATCAAAGCCACAAAACCTCCCCCGTGCGGGCTGGACGACGCTTTT
GCCGAGGACGAGGTGGGAGATGTGAGGGGGGCGGGCGATGCGCTTCGTTT
CTCGCGCGCTACGTCTGTTTTTTCTTGGGGGCAGGACGATGAATAGCACT
TTACTATGTTACTGTTAAAAATAGTTTAGGTTTTACTCTGCTTTGGTGAG
AAGATGGAAGAGTGTGATTCCACGTCTCGAACCGGCGGGGTTTCTCGAAG
GCATATACGGGGGCAATCTCTTTACTCGCACTGTAGGCCATCTCTGTTTT
TGTGCACTGGTTCTCTCTCAATTATATATACCTGGTACATGCTGAAGGGT
CTTTTCTTGATAGAAACGGCCCTGATTAACGCGTGGCCCTTTGCGATATA
TTTGTTCTGGTGAGAAGCGGAACAAGAGGCCCAGCGAAGAGCTCCAATAC
GTGGCGGGAAAATATGGTTGGGCGCCTGTGACAGCGCTGCATGTCCACGT
TGTACTATTACTATTACTATTACTATTACTATTACTACATACATCTGGCG
AGACAGCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGGACTCTTACGCAGACGCAAAAGTATAATTCCAGTTTTCGTC
TTGTTGGGTGGAGGCAATCTTGCCATTTTTTTTCAGACGCAAAAGTATCA
TTTCACTTTTTGTCTTTTTGGGTGAATCTCGGCGAAAGTCTTGCCAAGTG
TTTTAGGGACTTGTTAGTAATTTCGCACGCCGCACGCCGGTGGTGCACAC
GTGATCTAACAAACTGAAGTGTAGCTAGAACGAGCGCTGACGGGGCAAGC
GTTTATATTTTCGTAAGGCTGGGCCATCTATAGCGGTGTCGGCCGACGGA
AGTGCTGCGAAGGGCGCGGGGTCGCGATGTGGATCCTGAAAGTGTGCGAA
GTTCGACATGACGGCGAACTGCGACTCCTGTCTGTGCTCAAATCCCTCGT
GCTCAGCTGTTGGCCTGTCTTCTGGCGGTGACTTTATGTTCGAGTACAAC
GTGTGTGTGCGCAAAAATCTCTCTTACGGAGGTACCCTATAATCAAGTAA
TCAGGTCCAAATATCATGACCATGAATACCCAACTATTCCGACCATGAGT
ATCATACCCAAAACAACAACAAAATCTCATGAAAACAACAAAACACGAGA
TATGGCCATAAACAAGAACGTTGACCTTCAAATCTCGATAGTTCCAGCCT
ATTTTCATATTTCTAGGTTGAGACTTGTGGCAAAATTGGACCTGTTAAAG
TTAACTATGGTATGGTCCCCCGTAAGAGTGAAACAGAAACAGCACTAGTA
GTAGTACTTGACATGTGTCTTTCATCATTGAACGCCAAGAGACGGCATAT
GTATGTTGTATGTTGCAAGTGCAGTCTCCTGACGCACCACGTTCGCGGAA
TGTGTGGCAACGTTGACGGCGCAGAAAATACACACACACGAGCACCTGCT
CATGGGTTAGACGGGTCGGCCTGGTGGTTCGCTACAACGTATGATATCGT
GTTATCGTGTTTTACGTAATAGTCTGCATCGATATAGGGCGCTGTCGTCA
CCACGCAAAGCATACTTGTGTTGTGCGTGCTTTGCATTAGATAAGAGGTG
CACGGAAAACACCTATCTCGGTGAATGTGCTCGCTTGTCGCGAACACGTT
GAAGCGTGACGGGAGCATGCCTTGCACCGAGATGTTGCGAATCTCTTGTA
CGTACAGTACAGCATTGCCCCAAGTTTGTCTTATGGTCGTACAGTATTTC
TCAAACCGAGAATTGGTGATGAAATTGCACACGCGTTACGGCGAGGGGCC
TTGTGCGCTCAGTATACTATGTTATACTAACTATGGCGATATACCTGGGC
CATTATGTACTGCGCATTGCTACAATCCTAATGGCATTGCACGCTCAAGA
TTGCTTGCGGGTGCTTTGGGTGGATGGCTTGCAGGACTTATTGAACTTAT
TGGCGGGTTCTGTTTCAGGCCGTTGAGGCTGCCCACAACCCCCGAAAATT
CCGACAATCCGAGAGATAAGTTAACTAATTCTTTACCTGCCGCATGTCGA
AAAGGTATCGCACACATCGCCAATCAACGCATTGCTTTGCCCTGAATGCA
CATCCACGAGCCACCCATTGGATCGAAACATTGTATCGCCAGCGTATACT
GCGTCTTGGATCGTTCAGCAGAGTGTGCGAAGCAGAGCCTACTTTGTCAC
TTGTCCAGTTTACCAATTTGTCAGGTCTTAACGTACCTGCTGAAAATGAC
AGGACTGTATATATATATCACACTTGCACCGCATTCAGGCAGGCTTCTTG
CCCGCCCGGTGCTTTTCGCCACACAGATGTTTGAGATGCATCGGTCGGGC
AGTATACCTATCTCTATGCAGTCACCTAACCGTTGTTGGCGTAAAGGCAC
GTTGATTGCCCGCGTCTTCAGCCGAGCTGCTGGTGACAACACCGACAATT
GCATGCAAGCGGGGTGTTCGGAGAGGTATTCCGGGGGGGAAATAATTCCA
AACGATTTAGAACCCGGCCCATATTATTTTGTTTAGGGTCCCTCGGATTC
GTCGTGGTGTTTTTTTGGTTGTGAGGTCGTTGCACGCCCATGTAACCGCG
TCCCTGTCGCCACTTATGTTTGTTCTCGTGGCTTTTGCTGATTCGTGGCT
GACAGGGTGTCACAGAAACCGACAGCACGGAGATGACGGATGGCGATGAA
AGCCTCTCGGTGCCGTACGGGAGCTACCACCAGCTTTACCGAATCGACGG
TCGACTTGTTGCTGTCGGGGTGGTGGACATCTTACCTACGTGCCTGGTGA
GTTCAGTCGGGAGTCCCAGCAAGCCATGTGCTAGGATGCCACAGCCGGCG
ATGAGCAACCAGGGCTGGGTCGGTGTTTGGCCTGAAAAACTGCGCGGGAA
GATAGATGTCCTCATAATATACGGAGTCAGTCGTCCCGAAAGGCTTGCCC
CAAAAGAAGGACTCATGGCCCTAAAACGGTTAAGCGGCGTGTCTCACTCG
TTTGAGTGTCATAGCTTTAGCAAGAACGAGACCTCGATTGGCAGCTTTTG
GTACTCTACACGGGCTTTTATTTTGTGAGGAACCCGTGAAGACCGGTGTG
TATAGAGCGAGCAGATCGGGATGGATCCACACAAGGCTTGGCCGTACAGG
TAAAATAATAAATATGTATTTTTCCAGCAGTGTAGTCGAGGACTCGTCGG
GCCGCTAGATGTGACTGTGGTTCGCGCAAAACGCTTGCGGGGGTGGTGGC
CTTCGTTGTGTAACGAGTGCACTTGCACTTCTCGTTTACTTCCGACGGGA
GCGTCGTCCGCACGCTCTGTTATGGGTAATTGGCCACCTAACTCGAGGAT
CTCTGTTTGTCCTCTGACGGGTGGATTCTGTTACATTACAGTCGTCGGTG
TACTGTTTTTACGATCCGGACTACCGGGCGTTGGCGCTGGGCAAGCTGGC
CGCCCTGATGGAGATCGAGTTCGTCAAGGAGGTGCGTACATGCGGATGCG
GTCACTGCGCGCGATGCATGCGCTTTGTACGTTTGGCGCACCATCTGCTG
TTGTCTCTAAAAAAGGGACTGAAGCGAAACTTACCGCAGCAGTCCTTCTC
CCACCTATTTATCATGCTATCATAACACCGGAAACTACAACTTCTGTCTA
GTGAGCAGGAGACCTTGTGAGCAGGAGGCCTGCTCACTAGACAGCAGTTG
TTCGACTGGCTGTCCTTCCAAATATACAGCCCTCGGCGTTGTGCGTGAGC
CTGAGCACCACTTCTACACCAACGCAGGCTGACCGACGTGTTTCGGTCGA
TGGACTAGATATATATATAGATGCCCGCTACTCTTCTTGGGTCCGCGACA
ATCGTGCAAATAGGTACAAGTCCTCTGTGCGCCTGCCGGCTGCTTCGCAA
GTTCTGTAATCCCGCCGCGCACTGCCGCATCCATCCACCTCCGCAAACAC
TTAACAGGCGCGCGCGCTGAGACCAACCCTTCGCGACTACTACATGGGCT
TCTATATCCACACGTGCCCCAAGATGTCCTACAAAGGGTCCTTCACGCCA
TCCTTCCTCCTGTGCCCCGAGCGACTGTCCTGGGTACCCATAGAGGTCTG
CCGCCCCGTGCTGGACCGGCGCAAGTACGCCTGCCTGTCAGATCTTGTTC
CTCCTCCCGCGCTGCCTGCTTGGGTGCAATCGGGCGCTGGCTCGGCTGGC
GACACGAGCCGAAACGGCGGGCATCACGGTGGCCGCGGCACCGCCGGGGG
TTTGCGGGGCGGTTCCGGCTCCTCCCGTACGCCCGCCGACGTTGAATCGC
AGCAGCAGCAGCATGAGCAGTCCACCGCGGGCTCAAACGGCTCAACAGGA
GAAGCTGTTGGCGCTCCCGCGACTTCATCGTCTACTGCCTCGTCGTCTCT
GTCGCCGGAGCGGCGTGTCGTGGGCCGGGTGCGGAGAGACGCGCGTCCGA
CCTCCGCTCGCCCGCCCCGCGACGGCGGCAACGCGACGAACATTCGGGAC
GCCCACTCGGACGACCTGTCGATCATGAACGAGGTCCCGCTGATGCTCGG
GCGGCCGGCCTTCCCTGTCAGCCTGGCCGCGCTGGCGCCGCACGCGCAGA
TTATCGTGAGGGACACGCTGAGGACGTACGTTGCGACAGTTGGACCGGAC
CTCGCCCAGAGGGTGCTCTTGAAGCTGTATTCTTGATAGGGTGATTTGAG
GCGCGTCGTGTGAGAAGGGGTGGGGTGGCGGTGGTGGTGGGAGGTAGTAG
ACCTCCATAGAGCGAGCTTGGACCATTGTCCTCTCCACTAAAAAATTTGG
ACGCCAACGCTCGCTCTAAGTTTTTGAAACCATTTTTTGTATCGGGAGTG
GGGGGGTTGAGGCGTCAAGTTTTGGTATTGGTTGACGGGTCGTTCGTCTC
TGAGCGTGCGTGCTCATCCTTGCTCCTCGTGAAAATGTTTCGGCGCGGCG
GGATGTGGTTGAGCAGTCGCAGTCGCAGGTGCAGGGTCCCTTGTGGGAGG
TTTGAGGGCGGGGACAACCAGCAGGTACTACTACTACTCTACTACTACTA
CTGTACGAAGATGGTGCGTGTTCTCCAGTGGATTAATGTAATGTAAGCTC
GAGTGCTATTGTTGTTGAGTGCGTCCACCTTAAGGGTAGATGGCACTCGT
CCTTGATACGAGCTAAACTAGGTTTCTCGGTTGCCTCACATGTCGTACGA
CCCCGGGCACGACGTGTGATATGATTACGTATAACGGTTCGGTTGGGCCG
TAGCACTCTGTGTCCCTGTGAAGATACATAACACATGTACGATGTTTTCT
TGTAGTAAATCAAGCGCACGCGACGCACTACCTGTCTTGTCGTCCTTTGA
AGATACCTTGATTTTTTTTTCTGAAAAGAGTCGTTGAGGCGACTGACCGC
GTTTTCTCCACCGAGCGGACAGTCTTAAAAAAAGGCCGCTCGCCCGACAC
TGAGTAAAGCTCTTTTAAGAGAAGGAATGCTTGTGTATTGTTGTAACAGT
GTGGGATAATCACAGCTATCGTTATGGTGGCAGTAATTTGCTTTGAAATG
AC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12863:96..5797+

>mRNA_S-dermatodea_contig12863.1750.1 ID=mRNA_S-dermatodea_contig12863.1750.1|Name=mRNA_S-dermatodea_contig12863.1750.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1866bp|location=Sequence derived from alignment at S-dermatodea_contig12863:96..5797+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGGATGGCGATGAAAGCCTCTCGGTGCCGTACGGGAGCTACCACCA
GCTTTACCGAATCGACGGTCGACTTGTTGCTGTCGGGGTGGTGGACATCT
TACCTACGTGCCTGATGACGGATGGCGATGAAAGCCTCTCGGTGCCGTAC
GGGAGCTACCACCAGCTTTACCGAATCGACGGTCGACTTGTTGCTGTCGG
GGTGGTGGACATCTTACCTACGTGCCTGTCGTCGGTGTACTGTTTTTACG
ATCCGGACTACCGGGCGTTGGCGCTGGGCAAGCTGGCCGCCCTGATGGAG
ATCGAGTTCGTCAAGGAGTCGTCGGTGTACTGTTTTTACGATCCGGACTA
CCGGGCGTTGGCGCTGGGCAAGCTGGCCGCCCTGATGGAGATCGAGTTCG
TCAAGGAGGCGCGCGCGCTGAGACCAACCCTTCGCGACTACTACATGGGC
TTCTATATCCACACGTGCCCCAAGATGTCCTACAAAGGGTCCTTCACGCC
ATCCTTCCTCCTGTGCCCCGAGCGACTGTCCTGGGTACCCATAGAGGTCT
GCCGCCCCGTGCTGGACCGGCGCAAGTACGCCTGCCTGTCAGATCTTGTT
CCTCCTCCCGCGCTGCCTGCTTGGGTGCAATCGGGCGCTGGCTCGGCTGG
CGACACGAGCCGAAACGGCGGGCATCACGGTGGCCGCGGCACCGCCGGGG
GTTTGCGGGGCGGTTCCGGCTCCTCCCGTACGCCCGCCGACGTTGAATCG
CAGCAGCAGCAGCATGAGCAGTCCACCGCGGGCTCAAACGGCTCAACAGG
AGAAGCTGTTGGCGCTCCCGCGACTTCATCGTCTACTGCCTCGTCGTCTC
TGTCGCCGGAGCGGCGTGTCGTGGGCCGGGTGCGGAGAGACGCGCGTCCG
ACCTCCGCTCGCCCGCCCCGCGACGGCGGCAACGCGACGAACATTCGGGA
CGCCCACTCGGACGACCTGTCGATCATGAACGAGGTCCCGCTGATGCTCG
GGCGGCCGGCCTTCCCTGTCAGCCTGGCCGCGCTGGCGCCGCACGCGCAG
ATTATCGTGAGGGACACGCTGAGGACGTACGTTGCGACAGTTGGACCGGA
CCTCGCCCAGAGGGTGCTCTTGAAGCTGTATTCTTGAGCGCGCGCGCTGA
GACCAACCCTTCGCGACTACTACATGGGCTTCTATATCCACACGTGCCCC
AAGATGTCCTACAAAGGGTCCTTCACGCCATCCTTCCTCCTGTGCCCCGA
GCGACTGTCCTGGGTACCCATAGAGGTCTGCCGCCCCGTGCTGGACCGGC
GCAAGTACGCCTGCCTGTCAGATCTTGTTCCTCCTCCCGCGCTGCCTGCT
TGGGTGCAATCGGGCGCTGGCTCGGCTGGCGACACGAGCCGAAACGGCGG
GCATCACGGTGGCCGCGGCACCGCCGGGGGTTTGCGGGGCGGTTCCGGCT
CCTCCCGTACGCCCGCCGACGTTGAATCGCAGCAGCAGCAGCATGAGCAG
TCCACCGCGGGCTCAAACGGCTCAACAGGAGAAGCTGTTGGCGCTCCCGC
GACTTCATCGTCTACTGCCTCGTCGTCTCTGTCGCCGGAGCGGCGTGTCG
TGGGCCGGGTGCGGAGAGACGCGCGTCCGACCTCCGCTCGCCCGCCCCGC
GACGGCGGCAACGCGACGAACATTCGGGACGCCCACTCGGACGACCTGTC
GATCATGAACGAGGTCCCGCTGATGCTCGGGCGGCCGGCCTTCCCTGTCA
GCCTGGCCGCGCTGGCGCCGCACGCGCAGATTATCGTGAGGGACACGCTG
AGGACGTACGTTGCGACAGTTGGACCGGACCTCGCCCAGAGGGTGCTCTT
GAAGCTGTATTCTTGA
back to top