mRNA_S-dermatodea_contig12859.1746.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12859.1746.1
Unique NamemRNA_S-dermatodea_contig12859.1746.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12859.1746.1 vs. uniprot
Match: D7FQ58_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ58_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 4.140e-58
Identity = 105/140 (75.00%), Postives = 119/140 (85.00%), Query Frame = 1
Query:    1 DVNKLITKKFKQRPATQAEARDCAATVGREELAKASGIARAVLYFGQVTIGSANARNLAVTNNLPHAVLAEIAGLEGQSELVGSGPPAQVVPAGATAGFDIQFKCQTEQVYRKALTVSINKGAVHQFTLLAHTVPVSVEL 420
            D+NKLIT+KFKQ+PATQA+ RDCAA +GR++LAK     R  L FGQVT+GS+N RNLAVTNNLP A+LA + GLEGQSEL G+GPPAQVVPAGATAGFD+ FKC TEQVYRKAL + IN GAVHQF LLAHTVPVSVEL
Sbjct:  738 DINKLITRKFKQKPATQADMRDCAAVLGRDQLAKVDLHFR-TLDFGQVTVGSSNVRNLAVTNNLPQAILAALVGLEGQSELAGTGPPAQVVPAGATAGFDVHFKCYTEQVYRKALKMCINNGAVHQFNLLAHTVPVSVEL 876          
BLAST of mRNA_S-dermatodea_contig12859.1746.1 vs. uniprot
Match: A0A067D3T9_SAPPC (Calponin-homology (CH) domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D3T9_SAPPC)

HSP 1 Score: 102 bits (255), Expect = 1.080e-22
Identity = 57/140 (40.71%), Postives = 85/140 (60.71%), Query Frame = 1
Query:    1 DVNKLITKKFKQRPATQAEARDCAATVGREELAKASGIARAVLYFGQVTIGSANARNLAVTNNLPHAVLAEIAGLEGQSELVGSGPPAQVVPAGATAGFDIQFKCQTEQVYRKALTVSINKGAVHQFTLLAHTVPVSVEL 420
            D NKLI +KFK  P TQAE +DCA T+  E+L K        ++FG + + S + ++ +VTN+LPH +L  +       EL  + P +QV+PAGATAGFD+ F  + EQV++K +  S+N     +  ++A  VP+ VEL
Sbjct:  638 DENKLIKRKFKAAPVTQAEVKDCATTLTSEQL-KLIVAGPKTIHFGLICVHSVSKKSFSVTNDLPHNILVTLHFNNDHEELKQTSPMSQVIPAGATAGFDLTFFSRAEQVFQKYVQYSVNGQHSFKLLIVAEVVPICVEL 776          
BLAST of mRNA_S-dermatodea_contig12859.1746.1 vs. uniprot
Match: A0A1V9ZG56_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZG56_9STRA)

HSP 1 Score: 100 bits (248), Expect = 9.440e-22
Identity = 58/140 (41.43%), Postives = 84/140 (60.00%), Query Frame = 1
Query:    1 DVNKLITKKFKQRPATQAEARDCAATVGREELAKASGIARAVLYFGQVTIGSANARNLAVTNNLPHAVLAEIAGLEGQSELVGSGPPAQVVPAGATAGFDIQFKCQTEQVYRKALTVSINKGAVHQFTLLAHTVPVSVEL 420
            D NKLI KKFK  P TQAE +DCA T+  E+L K        ++FG V + S + ++ +VTN+LPH VL  +       EL  + P +QV+P+GA AGFD+ F  + EQV++K +  S+N     +  ++A  VP+ VEL
Sbjct:  643 DENKLIKKKFKAAPVTQAEVKDCATTLTSEQL-KFIVAGPKTIHFGLVCVHSVSKKSFSVTNDLPHNVLVTLHFNNDHEELKQTTPMSQVIPSGAVAGFDLTFFSRVEQVFQKYVQYSVNGQHSFKLLVVAEVVPICVEL 781          
BLAST of mRNA_S-dermatodea_contig12859.1746.1 vs. uniprot
Match: A0A485LET0_9STRA (Aste57867_20364 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LET0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.390e-21
Identity = 58/140 (41.43%), Postives = 82/140 (58.57%), Query Frame = 1
Query:    1 DVNKLITKKFKQRPATQAEARDCAATVGREELAKASGIARAVLYFGQVTIGSANARNLAVTNNLPHAVLAEIAGLEGQSELVGSGPPAQVVPAGATAGFDIQFKCQTEQVYRKALTVSINKGAVHQFTLLAHTVPVSVEL 420
            D NK+I KKFK +P TQAE +DCA T+  E+L K        + FG+V   S + ++ +VTN+LPH +L  +       EL  + P +QV+P GATAGFD  F  + EQV++K +  SIN     +  + A  VP+ VEL
Sbjct:  642 DDNKIIKKKFKPQPVTQAEVKDCATTLTSEQL-KQIVAGPKTINFGKVCAHSVSKKSFSVTNDLPHNILVTVHLANDHDELQQTTPLSQVIPTGATAGFDFTFFSRVEQVFQKYVNYSINGQHSSKLLVTAEVVPIRVEL 780          
BLAST of mRNA_S-dermatodea_contig12859.1746.1 vs. uniprot
Match: A0A6G0XXX0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXX0_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.450e-20
Identity = 55/140 (39.29%), Postives = 85/140 (60.71%), Query Frame = 1
Query:    1 DVNKLITKKFKQRPATQAEARDCAATVGREELAKASGIARAVLYFGQVTIGSANARNLAVTNNLPHAVLAEIAGLEGQSELVGSGPPAQVVPAGATAGFDIQFKCQTEQVYRKALTVSINKGAVHQFTLLAHTVPVSVEL 420
            D NK+I KKFK +P TQAE +DCA T+  ++L +     +A+  FG+V + S + ++ +VTN+LPH +   +       EL  + P +QV+P GATAGFD+ F  + EQV++K +  +IN     +  + A  VP+ VEL
Sbjct:  629 DENKIIKKKFKPQPMTQAEVKDCATTLTSDQLKQVFAGPKAI-NFGKVCVHSVSKKSFSVTNDLPHNIFVRMNITNELDELQQTTPTSQVIPPGATAGFDLTFFSRVEQVFQKHVHYTINGQHNSKLLVTAEVVPIRVEL 767          
BLAST of mRNA_S-dermatodea_contig12859.1746.1 vs. uniprot
Match: A0A024UTG8_9STRA (Calponin-homology (CH) domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTG8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.540e-20
Identity = 60/142 (42.25%), Postives = 83/142 (58.45%), Query Frame = 1
Query:    1 DVNKLITKKFKQRPATQAEARDCAATVGREELAKASGIARAVLYFGQVTIGSANARNLAVTNNLPHAVLAEIAGLEGQSELVGSGPPAQVVPAGATAGFDIQFKCQTEQVYRKALTVSINKGAVHQFTLL--AHTVPVSVEL 420
            D NK+I KKFK  P TQAE +DCA T+  E+L K        + FG+V + S + ++ +VTN+LPH +   +       EL  + P +QV+P GATAGFD  F  + EQV++K +  +IN    H F LL  A  VP+ VEL
Sbjct:  644 DDNKIIKKKFKPLPVTQAEVKDCATTLTSEQL-KLIVAGPKTINFGKVCVHSVSKKSFSVTNDLPHNISVHVHLANDHDELQQTTPLSQVIPTGATAGFDFTFFSRVEQVFQKYVNYTIN--GQHSFKLLVTAEVVPIRVEL 782          
BLAST of mRNA_S-dermatodea_contig12859.1746.1 vs. uniprot
Match: W4GNF4_9STRA (Calponin-homology (CH) domain-containing protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNF4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.100e-20
Identity = 60/142 (42.25%), Postives = 83/142 (58.45%), Query Frame = 1
Query:    1 DVNKLITKKFKQRPATQAEARDCAATVGREELAKASGIARAVLYFGQVTIGSANARNLAVTNNLPHAVLAEIAGLEGQSELVGSGPPAQVVPAGATAGFDIQFKCQTEQVYRKALTVSINKGAVHQFTLL--AHTVPVSVEL 420
            D NK+I KKFK  P TQAE +DCA T+  E+L K        + FG+V + S + ++ +VTN+LPH +   +       EL  + P +Q+VP GATAGFD  F  + EQV++K +  +IN    H F LL  A  VP+ VEL
Sbjct:  646 DDNKIIKKKFKPLPVTQAEVKDCATTLTSEQL-KQIVAGPKTINFGKVCVHSVSKKSFSVTNDLPHNISVHVHLANDHDELQETTPLSQIVPTGATAGFDFTFFSRIEQVFQKYVNYTIN--GQHSFKLLVTAEVVPIRVEL 784          
BLAST of mRNA_S-dermatodea_contig12859.1746.1 vs. uniprot
Match: A0A1V9ZZW5_9STRA (Calponin-homology (CH) domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZW5_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.240e-20
Identity = 55/140 (39.29%), Postives = 80/140 (57.14%), Query Frame = 1
Query:    1 DVNKLITKKFKQRPATQAEARDCAATVGREELAKASGIARAVLYFGQVTIGSANARNLAVTNNLPHAVLAEIAGLEGQSELVGSGPPAQVVPAGATAGFDIQFKCQTEQVYRKALTVSINKGAVHQFTLLAHTVPVSVEL 420
            D NKLI KKFK  P TQAE +DC  T+  E+L K        + FG V + S + ++  VTN LPH +L  +       EL  + P +QV+P+G+ AGFD+ F  + EQ+++K +  SIN     +  ++A  VP+ VEL
Sbjct:  636 DENKLIKKKFKVAPVTQAEVKDCGTTLSSEDL-KLIMAGPKTINFGLVCVHSVSKKSFTVTNELPHNILVSLHLNNDHEELRQTTPMSQVIPSGSVAGFDLTFFSRAEQLFQKYIQYSINGQHSFKLLVVAEVVPICVEL 774          
BLAST of mRNA_S-dermatodea_contig12859.1746.1 vs. uniprot
Match: A0A7S3G9Q8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G9Q8_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 1.810e-17
Identity = 54/140 (38.57%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    1 DVNKLITKKFKQRPATQAEARDCAATVGREELAKASGIARAVLYFGQVTIGSANARNLAVTNNLPHAVLAEIAGLEGQSELVGSGPPAQVVPAGATAGFDIQFKCQTEQVYRKALTVSINKGAVHQFTLLAHTVPVSVEL 420
            D N++I KKFK +P TQ E RDC AT+   EL K S   R++  FG + +GS+  +  +V N     +L  +  +     L GS P AQV+P GATAGFDI    ++ + +R+ +   IN     QF + A  VPV+++L
Sbjct:   45 DPNRMIKKKFKSKPTTQTETRDCKATLTPRELNKISCGPRSI-DFGLICVGSSLKKCFSVQNETKANILVSV--ILSDDTLAGSAPQAQVIPPGATAGFDICLTAKSPKTFRREIDYVINGLHTFQFEVAAQFVPVTLQL 181          
BLAST of mRNA_S-dermatodea_contig12859.1746.1 vs. uniprot
Match: A0A7S1XZ72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZ72_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.180e-17
Identity = 49/99 (49.49%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 DVNKLITKKFKQRPATQAEARDCAATVGREELAKASGIARAVLYFGQVTIGSANARNLAVTNNLPHAVLAEIAGLEGQSELVGSGPPAQVVPAGATAGF 297
            D NKLI KKFK RP TQAE RDC   +   +L   +G +  VL FG+V +GS + +N AVTN+  + V  ++ G E   EL  S P +QVVPAGA AGF
Sbjct:   38 DENKLILKKFKPRPTTQAEMRDCTTELSATDLLLVTG-SHKVLDFGRVCLGSVSVKNFAVTNDFANCVYVQLEGFE--PELQMSTPESQVVPAGAVAGF 133          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12859.1746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FQ58_ECTSI4.140e-5875.00Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A067D3T9_SAPPC1.080e-2240.71Calponin-homology (CH) domain-containing protein n... [more]
A0A1V9ZG56_9STRA9.440e-2241.43Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485LET0_9STRA2.390e-2141.43Aste57867_20364 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XXX0_9STRA1.450e-2039.29Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UTG8_9STRA1.540e-2042.25Calponin-homology (CH) domain-containing protein n... [more]
W4GNF4_9STRA2.100e-2042.25Calponin-homology (CH) domain-containing protein n... [more]
A0A1V9ZZW5_9STRA7.240e-2039.29Calponin-homology (CH) domain-containing protein n... [more]
A0A7S3G9Q8_9EUKA1.810e-1738.57Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A7S1XZ72_9STRA5.180e-1749.49Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12859contigS-dermatodea_contig12859:2758..3670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.7
Seed ortholog evalue1.4e-50
Seed eggNOG ortholog2880.D7FQ58
Preferred nameCHDC2
KEGG rclassRC00299
KEGG koko:K01593
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG ModuleM00037,M00042
EggNOG OGs2CBV6@1,2QQ4Q@2759
EC4.1.1.105,4.1.1.28
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-01_007390.1
Exons3
Model size420
Cds size420
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12859.1746.1prot_S-dermatodea_contig12859.1746.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12859 2758..3670 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.9552689-CDS-S-dermatodea_contig12859:2757..28501622924264.9552689-CDS-S-dermatodea_contig12859:2757..2850Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12859 2758..2850 -
1694079135.7621014-CDS-S-dermatodea_contig12859:2757..28501694079135.7621014-CDS-S-dermatodea_contig12859:2757..2850Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12859 2758..2850 -
1622924264.968468-CDS-S-dermatodea_contig12859:3130..33271622924264.968468-CDS-S-dermatodea_contig12859:3130..3327Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12859 3131..3327 -
1694079135.7729952-CDS-S-dermatodea_contig12859:3130..33271694079135.7729952-CDS-S-dermatodea_contig12859:3130..3327Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12859 3131..3327 -
1622924264.9769833-CDS-S-dermatodea_contig12859:3540..36701622924264.9769833-CDS-S-dermatodea_contig12859:3540..3670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12859 3541..3670 -
1694079135.781693-CDS-S-dermatodea_contig12859:3540..36701694079135.781693-CDS-S-dermatodea_contig12859:3540..3670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12859 3541..3670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12859.1746.1

>prot_S-dermatodea_contig12859.1746.1 ID=prot_S-dermatodea_contig12859.1746.1|Name=mRNA_S-dermatodea_contig12859.1746.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=140bp
DVNKLITKKFKQRPATQAEARDCAATVGREELAKASGIARAVLYFGQVTI
GSANARNLAVTNNLPHAVLAEIAGLEGQSELVGSGPPAQVVPAGATAGFD
IQFKCQTEQVYRKALTVSINKGAVHQFTLLAHTVPVSVEL
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mRNA from alignment at S-dermatodea_contig12859:2758..3670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12859.1746.1 ID=mRNA_S-dermatodea_contig12859.1746.1|Name=mRNA_S-dermatodea_contig12859.1746.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=913bp|location=Sequence derived from alignment at S-dermatodea_contig12859:2758..3670- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGTAAACAAACTCATCACGAAGAAGTTCAAGCAGCGGCCGGCCACACA GGCGGAGGCGAGGGACTGTGCCGCCACAGTCGGAAGGGAAGAGCTCGCTA AGGCTAGTGGAATTGCGCGTGCAGTCCTTTGTTAGCCCTCACGTTGTCAT GGTCTCGGCATTTCTTTCAGATAGAAGTAAGCGTTCTACATGGCGTCACG CATGCGCTATTACCATGCACCAGCCGTCTCAAACGAAGCTGCGCACTCGA TTCGCCATCCACCAATACTCCAGTATCCTTTTGCTCTTATCGCCCCCCCC CCCCCGAAATCGAGCCAGGTGGATCTCCACTCACGAACTCTAGACTTCGG TCAGGTGACGATAGGCTCCGCCAACGCGCGCAACCTTGCCGTCACCAACA ACTTGCCGCACGCCGTCTTAGCGGAGATCGCGGGGCTCGAGGGCCAATCG GAGCTAGTCGGAAGTGGGCCGCCAGCCCAGGTGGTGCCAGCGGGGGCTAC TGCGGGTTTCGACATACAGTTCAAGTGCCAAACTGAGCAGGTGCAGCGTA GTCGGTTTGGGTTGGGTATAGGGTAAAGTGGGGAGCTGGGTATCAGTAAG CCAAAAGTTGAAAGCGAGAGTTGAAGGCTGGGGTAAGACTCCTCACTTCC AGTCTTTGTAGAGCTCATAGGAGATGACTGGGCGCGAGAAGTTCGAATAC TGTTGGTGTTCCGACGTTCTACCGCTCCGTTTCACCAAAGCCCTCATGAC CGCTATATATTCGAATTGCATTAAAATACTCTGACATCGCTGTTGGGCGT ACAAATGCCGGCCCCAAAAGGTATACAGGAAGGCGCTAACGGTTTCCATC AACAAGGGGGCGGTGCACCAGTTCACGTTGCTGGCGCACACCGTACCGGT TAGCGTGGAGCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12859:2758..3670-

>mRNA_S-dermatodea_contig12859.1746.1 ID=mRNA_S-dermatodea_contig12859.1746.1|Name=mRNA_S-dermatodea_contig12859.1746.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at S-dermatodea_contig12859:2758..3670- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGTAAACAAACTCATCACGAAGAAGTTCAAGCAGCGGCCGGCCACACA
GGCGGAGGCGAGGGACTGTGCCGCCACAGTCGGAAGGGAAGAGCTCGCTA
AGGCTAGTGGAATTGCGCGTGCAGTCCTTTGATGTAAACAAACTCATCAC
GAAGAAGTTCAAGCAGCGGCCGGCCACACAGGCGGAGGCGAGGGACTGTG
CCGCCACAGTCGGAAGGGAAGAGCTCGCTAAGGCTAGTGGAATTGCGCGT
GCAGTCCTTTACTTCGGTCAGGTGACGATAGGCTCCGCCAACGCGCGCAA
CCTTGCCGTCACCAACAACTTGCCGCACGCCGTCTTAGCGGAGATCGCGG
GGCTCGAGGGCCAATCGGAGCTAGTCGGAAGTGGGCCGCCAGCCCAGGTG
GTGCCAGCGGGGGCTACTGCGGGTTTCGACATACAGTTCAAGTGCCAAAC
TGAGCAGACTTCGGTCAGGTGACGATAGGCTCCGCCAACGCGCGCAACCT
TGCCGTCACCAACAACTTGCCGCACGCCGTCTTAGCGGAGATCGCGGGGC
TCGAGGGCCAATCGGAGCTAGTCGGAAGTGGGCCGCCAGCCCAGGTGGTG
CCAGCGGGGGCTACTGCGGGTTTCGACATACAGTTCAAGTGCCAAACTGA
GCAGGTATACAGGAAGGCGCTAACGGTTTCCATCAACAAGGGGGCGGTGC
ACCAGTTCACGTTGCTGGCGCACACCGTACCGGTTAGCGTGGAGCTGGTA
TACAGGAAGGCGCTAACGGTTTCCATCAACAAGGGGGCGGTGCACCAGTT
CACGTTGCTGGCGCACACCGTACCGGTTAGCGTGGAGCTG
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