mRNA_S-dermatodea_contig12850.1741.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12850.1741.1
Unique NamemRNA_S-dermatodea_contig12850.1741.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12850.1741.1 vs. uniprot
Match: A0A7S3D3U6_9EUKA (Cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D3U6_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 7.440e-8
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:  163 FSCSLCRESFRVDYHGRKPPFCPQVVFMEDVFCMKDPFSMGGGEAGENVSCTEIKCS 333
            F+CS+C + +  +Y G+KPPF   VV++EDV+ ++DPF     + GE V C   +CS
Sbjct:    6 FTCSICMQDYPFEYFGKKPPFQNDVVYVEDVYVLRDPFHSLHSK-GERVVCMGGRCS 61
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BLAST of mRNA_S-dermatodea_contig12850.1741.1 vs. uniprot
Match: A0A0D2VYM5_CAPO3 (Cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VYM5_CAPO3)

HSP 1 Score: 57.0 bits (136), Expect = 2.060e-7
Identity = 24/57 (42.11%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:  160 SFSCSLCRESFRVDYHGRKPPFCPQVVFMEDVFCMKDPFSMGGGEAGENVSCTEIKC 330
            S  CSLC      DY G+ PPF P+VVF+EDVF ++DPF++    A    +    +C
Sbjct:   37 STQCSLCAHPVPYDYTGKTPPFAPRVVFLEDVFAIRDPFAVAAQTASLAAASLPKRC 93
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BLAST of mRNA_S-dermatodea_contig12850.1741.1 vs. uniprot
Match: E1ZVX2_CAMFO (Cysteine-rich DPF motif domain-containing protein 1 (Fragment) n=1 Tax=Camponotus floridanus TaxID=104421 RepID=E1ZVX2_CAMFO)

HSP 1 Score: 53.9 bits (128), Expect = 9.480e-7
Identity = 27/71 (38.03%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:  160 SFSCSLCRESFRVDYHGRKPPFCPQVVFMEDVFCMKDPFSMGGGEAGE----NVSCTEIKCSQRRGPTSLY 360
            +F+CS C    R DY G KPPF  Q+V++E+ + +KDPFS+     GE       C+  KC+   G +  Y
Sbjct:   14 NFTCSFCYLKERYDYKGTKPPFARQLVYLEECYIIKDPFSLPN--RGEVLVLGADCSICKCTVCLGCSIFY 82
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BLAST of mRNA_S-dermatodea_contig12850.1741.1 vs. uniprot
Match: UPI001069289D (cysteine-rich DPF motif domain-containing protein 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069289D)

HSP 1 Score: 53.9 bits (128), Expect = 1.110e-6
Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 1 
Query:  163 FSCSLCRESFRVDYHGRKPPFCPQVVFMEDVFCMKDPFSMGGGEA---GENVSC-TEIKCSQR 339
            F C  C  S   DY G++PPFC +++ +E V+ +KDPF+   G     G    C TE+ C Q+
Sbjct:   10 FQCKNCNFSTHYDYFGKQPPFCKEIILLESVYVIKDPFTRETGIVILGGHCALCHTEVCCDQK 72
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BLAST of mRNA_S-dermatodea_contig12850.1741.1 vs. uniprot
Match: UPI001CDC2098 (cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDC2098)

HSP 1 Score: 53.1 bits (126), Expect = 2.230e-6
Identity = 26/63 (41.27%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:  160 SFSCSLCRESFRVDYHGRKPPFCPQVVFMEDVFCMKDPFSMGG-GEA----GENVSCTEIKCS 333
            +F CS C+   + DY G KPPF   ++F+ED + MKDPFS+   GE     G+   C +  CS
Sbjct:   14 NFECSSCKLYEKFDYKGTKPPFARNILFLEDCYVMKDPFSLPNRGEVLVIGGDCSICNKQICS 76
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BLAST of mRNA_S-dermatodea_contig12850.1741.1 vs. uniprot
Match: UPI001144DCA7 (cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Formica exsecta TaxID=72781 RepID=UPI001144DCA7)

HSP 1 Score: 53.5 bits (127), Expect = 2.570e-6
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:  160 SFSCSLCRESFRVDYHGRKPPFCPQVVFMEDVFCMKDPFSM 282
            +F+CS C    R DY G KPPF  Q+V++E+ + MKDPFS+
Sbjct:   32 TFTCSFCYLKERYDYKGAKPPFARQLVYLEECYIMKDPFSL 72
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BLAST of mRNA_S-dermatodea_contig12850.1741.1 vs. uniprot
Match: A0A6I9WX10_9HYME (Cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Pogonomyrmex barbatus TaxID=144034 RepID=A0A6I9WX10_9HYME)

HSP 1 Score: 52.8 bits (125), Expect = 5.320e-6
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:  160 SFSCSLCRESFRVDYHGRKPPFCPQVVFMEDVFCMKDPFSM 282
            +FSCSLC      DY G KPPF  Q+++ E+ + MKDPFS+
Sbjct:   36 TFSCSLCSLKEHYDYKGGKPPFARQLIYSEECYVMKDPFSL 76
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BLAST of mRNA_S-dermatodea_contig12850.1741.1 vs. uniprot
Match: A0A026WV90_OOCBI (Cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WV90_OOCBI)

HSP 1 Score: 52.0 bits (123), Expect = 1.150e-5
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:  163 FSCSLCRESFRVDYHGRKPPFCPQVVFMEDVFCMKDPFS 279
            F+CS+C    R DY G +PPF  Q+++ ED + MKDPFS
Sbjct:   46 FTCSICNLKERYDYKGARPPFARQLLYSEDCYVMKDPFS 84
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BLAST of mRNA_S-dermatodea_contig12850.1741.1 vs. uniprot
Match: E2B997_HARSA (Cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Harpegnathos saltator TaxID=610380 RepID=E2B997_HARSA)

HSP 1 Score: 51.2 bits (121), Expect = 1.210e-5
Identity = 24/62 (38.71%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:  160 SFSCSLCRESFRVDYHGRKPPFCPQVVFMEDVFCMKDPFSMGG-GEA----GENVSCTEIKC 330
            +F+CS C      DY G +PPF  Q+V++E+ + MKDPFS+   GE     G+  +C    C
Sbjct:    8 TFACSFCSLKEHYDYKGTRPPFARQLVYLEECYVMKDPFSLPSRGEVLVLGGDCSTCGHAVC 69
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BLAST of mRNA_S-dermatodea_contig12850.1741.1 vs. uniprot
Match: UPI00063F3381 (cysteine-rich DPF motif domain-containing protein 1 n=1 Tax=Monomorium pharaonis TaxID=307658 RepID=UPI00063F3381)

HSP 1 Score: 51.6 bits (122), Expect = 1.260e-5
Identity = 20/41 (48.78%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:  160 SFSCSLCRESFRVDYHGRKPPFCPQVVFMEDVFCMKDPFSM 282
            +F+CS C      DY G KPPF  Q+V++E+ + MKDPFS+
Sbjct:   28 TFTCSFCPLKEHYDYKGAKPPFARQLVYLEECYIMKDPFSL 68
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12850.1741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7S3D3U6_9EUKA7.440e-842.11Cysteine-rich DPF motif domain-containing protein ... [more]
A0A0D2VYM5_CAPO32.060e-742.11Cysteine-rich DPF motif domain-containing protein ... [more]
E1ZVX2_CAMFO9.480e-738.03Cysteine-rich DPF motif domain-containing protein ... [more]
UPI001069289D1.110e-638.10cysteine-rich DPF motif domain-containing protein ... [more]
UPI001CDC20982.230e-641.27cysteine-rich DPF motif domain-containing protein ... [more]
UPI001144DCA72.570e-651.22cysteine-rich DPF motif domain-containing protein ... [more]
A0A6I9WX10_9HYME5.320e-651.22Cysteine-rich DPF motif domain-containing protein ... [more]
A0A026WV90_OOCBI1.150e-551.28Cysteine-rich DPF motif domain-containing protein ... [more]
E2B997_HARSA1.210e-538.71Cysteine-rich DPF motif domain-containing protein ... [more]
UPI00063F33811.260e-548.78cysteine-rich DPF motif domain-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12850contigS-dermatodea_contig12850:5317..6539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_006030.1
Exons2
Model size420
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12850.1741.1prot_S-dermatodea_contig12850.1741.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12850 6237..6539 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.717644-UTR-S-dermatodea_contig12850:5316..54111622924264.717644-UTR-S-dermatodea_contig12850:5316..5411Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12850 5317..5411 +
1694079135.622116-UTR-S-dermatodea_contig12850:5316..54111694079135.622116-UTR-S-dermatodea_contig12850:5316..5411Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12850 5317..5411 +
1622924264.727313-UTR-S-dermatodea_contig12850:6214..62361622924264.727313-UTR-S-dermatodea_contig12850:6214..6236Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12850 6215..6236 +
1694079135.6303585-UTR-S-dermatodea_contig12850:6214..62361694079135.6303585-UTR-S-dermatodea_contig12850:6214..6236Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12850 6215..6236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.7354426-CDS-S-dermatodea_contig12850:6236..65391622924264.7354426-CDS-S-dermatodea_contig12850:6236..6539Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12850 6237..6539 +
1694079135.6388006-CDS-S-dermatodea_contig12850:6236..65391694079135.6388006-CDS-S-dermatodea_contig12850:6236..6539Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12850 6237..6539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12850.1741.1

>prot_S-dermatodea_contig12850.1741.1 ID=prot_S-dermatodea_contig12850.1741.1|Name=mRNA_S-dermatodea_contig12850.1741.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MAGAGAGATASSGSSFSCSLCRESFRVDYHGRKPPFCPQVVFMEDVFCMK
DPFSMGGGEAGENVSCTEIKCSQRRGPTSLYKLNPFGTEPVFGVRPIVSI
*
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mRNA from alignment at S-dermatodea_contig12850:5317..6539+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12850.1741.1 ID=mRNA_S-dermatodea_contig12850.1741.1|Name=mRNA_S-dermatodea_contig12850.1741.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1223bp|location=Sequence derived from alignment at S-dermatodea_contig12850:5317..6539+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCGGCTTGTAACTGTCGTGGCGATAACGTTACTGGCAGGCTGGACAGCA
GCACTGCCGAGAGTGTGACTTCTCTTCATATACCTTACGGGCCAGGTGAG
GTGCAAACAGTCCGCCGATGTTGAGGGCTAGAATTATGAATTATTCCCGC
CGCATTTATTTGTCAGCGGGTTTTCCGTTTTCCCTGAGAGTCCCGCGTGT
ACTACAGACAGTATCATACTACTGTTGTACTGCTGTGCGTGTACCGCAGC
GACCTCGTGTGTCCGGCTCCACGCTGATGACAAGGGCGCGTGTAATGGAT
GTTATATCATTGTTCGCCACGGTGGGAAGATAAATGCAACAACCGAGGTA
GGGCGTAAACATTTGGGTGCACGAGAGCTACAGCAGTACCTCAAAAGAGG
CCAGCGACAAAACGCCCGGGTACGTTCTGCTGGGCCAAGTACAGTACAGT
AGAGCAGTATTGCACTTCCAAGGGGACTCGCCTGGACCATGTTCTGCTAA
GCATATTTTCTTTCGGGAGGCCGTGAAATAATCTGAGTTTTGTGTACAAC
AAAGTCCACCGGGGTTGGTAATGTCGTGTCCTAATGGATTGTACAAGTAT
ACTACTGCTTGTACACCTTTCTGTGTTCTGTTTCTTTATAAAAATAATTA
AAAAAACAATGGGTACCAGGTATGATGTCACACGTGGGCCGGAGCAAAAA
ACACTCGCCTATTTTTGTCGAGTTCAAAATAAGTGTTGCCGGCCTCTTTC
ATGAATTCGTGCAACATATCCGCCCCAAATGTACCTTATCCCTCGGCTGT
ACCCCACTCCACTCCGAATTTCAACGCGAACCATCCTCCAACCTATTAGG
GTATTACGCACCATACTCCTGGCTGACCCTCGTTCTCGCAAAACGCAGAT
TTTCGGTTCGGGGGAAGGCAATGGCAGGTGCCGGGGCAGGTGCGACCGCG
AGCTCAGGATCCTCGTTCTCTTGCTCGCTGTGCAGAGAGTCTTTTCGCGT
TGATTATCACGGAAGAAAACCGCCCTTCTGCCCCCAGGTGGTGTTCATGG
AGGATGTGTTCTGCATGAAGGATCCATTTTCGATGGGGGGGGGAGAAGCC
GGCGAAAACGTGAGCTGCACTGAAATTAAATGTTCGCAGCGTCGTGGCCC
CACCTCGTTGTACAAGCTTAACCCTTTTGGGACTGAGCCTGTTTTCGGGG
TTAGGCCAATCGTGAGTATATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12850:5317..6539+

>mRNA_S-dermatodea_contig12850.1741.1 ID=mRNA_S-dermatodea_contig12850.1741.1|Name=mRNA_S-dermatodea_contig12850.1741.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig12850:5317..6539+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGGTGCCGGGGCAGGTGCGACCGCGAGCTCAGGATCCTCGTTCTC
TTGCTCGCTGTGCAGAGAGTCTTTTCGCGTTGATTATCACGGAAGAAAAC
CGCCCTTCTGCCCCCAGGTGGTGTTCATGGAGGATGTGTTCTGCATGAAG
GATCCATTTTCGATGGGGGGGGGAGAAGCCGGCGAAAACGTGAGCTGCAC
TGAAATTAAATGTTCGCAGCGTCGTGGCCCCACCTCGTTGTACAAGCTTA
ACCCTTTTGGGACTGAGCCTGTTTTCGGGGTTAGGCCAATCGTGAGTATA
TAGATGGCAGGTGCCGGGGCAGGTGCGACCGCGAGCTCAGGATCCTCGTT
CTCTTGCTCGCTGTGCAGAGAGTCTTTTCGCGTTGATTATCACGGAAGAA
AACCGCCCTTCTGCCCCCAGGTGGTGTTCATGGAGGATGTGTTCTGCATG
AAGGATCCATTTTCGATGGGGGGGGGAGAAGCCGGCGAAAACGTGAGCTG
CACTGAAATTAAATGTTCGCAGCGTCGTGGCCCCACCTCGTTGTACAAGC
TTAACCCTTTTGGGACTGAGCCTGTTTTCGGGGTTAGGCCAATCGTGAGT
ATATAG
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