mRNA_S-dermatodea_contig12845.1735.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12845.1735.1
Unique NamemRNA_S-dermatodea_contig12845.1735.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12845.1735.1 vs. uniprot
Match: A0A6H5KLH0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLH0_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 8.080e-43
Identity = 82/133 (61.65%), Postives = 93/133 (69.92%), Query Frame = 1 
Query:    1 LQHCAFRMDTFRVHDKT------APDSVSFMFVFNSGEEAQAALDVTHTRRPTSAGSSARSGTGAGSLPDG---GEERVKMTLGGMNVPHMSGEPHSCHIRQVGTVTFNPRKQARSYLYILSQEGRTLFTSLT 372
            LQHCAF M+ FRVH K       AP   +FMFVF+ G+  QA L+VTHT  P    +  ++G G G  PD    GE RV MTLGG NVPH  GEP+SC+IRQVG VTFNPRKQAR YLYILSQEGRTLFTSL+
Sbjct:  122 LQHCAFHMEAFRVHTKNQTVAAGAPTPTTFMFVFHGGQPNQATLEVTHTP-PCLTPARGKAGDGGGEEPDPTSEGEGRVTMTLGGNNVPHRPGEPYSCYIRQVGHVTFNPRKQARGYLYILSQEGRTLFTSLS 253
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12845.1735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLH0_9PHAE8.080e-4361.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12845contigS-dermatodea_contig12845:64..1186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_001460.1
Exons2
Model size375
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12845.1735.1prot_S-dermatodea_contig12845.1735.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12845 85..1186 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.3787374-UTR-S-dermatodea_contig12845:63..841622924264.3787374-UTR-S-dermatodea_contig12845:63..84Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12845 64..84 +
1694079135.4233384-UTR-S-dermatodea_contig12845:63..841694079135.4233384-UTR-S-dermatodea_contig12845:63..84Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12845 64..84 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.3872697-CDS-S-dermatodea_contig12845:84..3791622924264.3872697-CDS-S-dermatodea_contig12845:84..379Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12845 85..379 +
1694079135.433134-CDS-S-dermatodea_contig12845:84..3791694079135.433134-CDS-S-dermatodea_contig12845:84..379Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12845 85..379 +
1622924264.395553-CDS-S-dermatodea_contig12845:1127..11861622924264.395553-CDS-S-dermatodea_contig12845:1127..1186Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12845 1128..1186 +
1694079135.4435563-CDS-S-dermatodea_contig12845:1127..11861694079135.4435563-CDS-S-dermatodea_contig12845:1127..1186Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12845 1128..1186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12845.1735.1

>prot_S-dermatodea_contig12845.1735.1 ID=prot_S-dermatodea_contig12845.1735.1|Name=mRNA_S-dermatodea_contig12845.1735.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
MDTFRVHDKTAPDSVSFMFVFNSGEEAQAALDVTHTRRPTSAGSSARSGT
GAGSLPDGGEERVKMTLGGMNVPHMSGEPHSCHIRQVGTVTFNPRKQARS
YLYILSQEGRTLFTSLT*
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mRNA from alignment at S-dermatodea_contig12845:64..1186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12845.1735.1 ID=mRNA_S-dermatodea_contig12845.1735.1|Name=mRNA_S-dermatodea_contig12845.1735.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1123bp|location=Sequence derived from alignment at S-dermatodea_contig12845:64..1186+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCAGCACTGCGCTTTCCGCATGGACACGTTCCGGGTGCACGACAAGAC
CGCACCGGATTCCGTCTCATTCATGTTCGTGTTCAACAGCGGGGAAGAGG
CGCAAGCTGCCCTGGACGTGACGCACACACGCCGCCCTACCTCGGCGGGG
TCGTCGGCGAGGTCGGGGACGGGGGCAGGCTCCCTGCCGGACGGCGGAGA
AGAGCGGGTTAAGATGACGCTCGGCGGCATGAACGTTCCGCACATGTCGG
GGGAGCCTCACTCGTGCCACATCCGTCAGGTCGGCACCGTCACCTTCAAC
CCGCGGAAGCAGGCGAGTTTTTTTCCAGCCGTCCAAATCGTCCCCCCACG
CGAGGGAGGATTCATGGCGTTACCCCCCCTGAAACAATAAACGATTTATG
TAAAACACAGAGAGGTCCACTCTTTCTTGTATTGGAAAATAGAAAATATG
GCCCAAGCTATGACTCAGTGGAGGTCTACGATATGTATGGTGCTGCCCCC
CCCCCCCCCCCCCCCCCCCCCCACTCTTTTTTTGGAGAGTGGGCGTGTGT
TCTTTCCCTGCGTTATTGTGATCCGGGGGCGTCCCGCATTGCGNNNNNNN
NNNAAAACCAAAAAAGGCCCCTCTTTTTTGTTTTGGAAAAAAAAAAAAAT
GCCCCAAGCTATGACCCAGTGGAGGTCTACGATATTTTTGGGGCTGCCCC
CCCCCCCCCCCGCCCCTCCCCCTTTTTCGTGATAGGCGCTCGTGTAGTTT
GCTTCCCCGTTGTAAAGTAGACGGGGACTTCCACGTTTAGGGAAAGGGTC
GGATATCCAGAGCGGGCGAAGGTTCCGGCGCGATTTTCTCCGGATCGCGT
GCTGCGCCGCGGGTGTCCCGGTGCGCCCAAATCCGCCCCGCTACCCCCCA
TCCAGCACCCTCGCGGCCTTGTCACCATTTTTTGGAAGGGTTAGTCTGGT
TGTTGGAGCATGTCAAAGGGCGTTTTCAACTGTTTTTTTTTGTAACAACC
TGACCGGTGCACTTTATTACGCCCTGTGTTGTTCTCCGCCCTCTTGACAC
CCCGCAGGCTAAAGGGAGCTACCTCTACATCCTAAGTCAGGAGGGGCGCA
CGCTGTTCACCTCGCTGACCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12845:64..1186+

>mRNA_S-dermatodea_contig12845.1735.1 ID=mRNA_S-dermatodea_contig12845.1735.1|Name=mRNA_S-dermatodea_contig12845.1735.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig12845:64..1186+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACACGTTCCGGGTGCACGACAAGACCGCACCGGATTCCGTCTCATT
CATGTTCGTGTTCAACAGCGGGGAAGAGGCGCAAGCTGCCCTGGACGTGA
CGCACACACGCCGCCCTACCTCGGCGGGGTCGTCGGCGAGGTCGGGGACG
GGGGCAGGCTCCCTGCCGGACGGCGGAGAAGAGCGGGTTAAGATGACGCT
CGGCGGCATGAACGTTCCGCACATGTCGGGGGAGCCTCACTCGTGCCACA
TCCGTCAGGTCGGCACCGTCACCTTCAACCCGCGGAAGCAGGCGAATGGA
CACGTTCCGGGTGCACGACAAGACCGCACCGGATTCCGTCTCATTCATGT
TCGTGTTCAACAGCGGGGAAGAGGCGCAAGCTGCCCTGGACGTGACGCAC
ACACGCCGCCCTACCTCGGCGGGGTCGTCGGCGAGGTCGGGGACGGGGGC
AGGCTCCCTGCCGGACGGCGGAGAAGAGCGGGTTAAGATGACGCTCGGCG
GCATGAACGTTCCGCACATGTCGGGGGAGCCTCACTCGTGCCACATCCGT
CAGGTCGGCACCGTCACCTTCAACCCGCGGAAGCAGGCGAGGAGCTACCT
CTACATCCTAAGTCAGGAGGGGCGCACGCTGTTCACCTCGCTGACCTGAG
GAGCTACCTCTACATCCTAAGTCAGGAGGGGCGCACGCTGTTCACCTCGC
TGACCTGA
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