mRNA_S-dermatodea_contig1281.1720.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1281.1720.1
Unique NamemRNA_S-dermatodea_contig1281.1720.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1281.1720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1281contigS-dermatodea_contig1281:15532..17492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1281.1720.1prot_S-dermatodea_contig1281.1720.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1281 15532..17483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924263.1950786-CDS-S-dermatodea_contig1281:15531..158011622924263.1950786-CDS-S-dermatodea_contig1281:15531..15801Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1281 15532..15801 -
1694079134.4832902-CDS-S-dermatodea_contig1281:15531..158011694079134.4832902-CDS-S-dermatodea_contig1281:15531..15801Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1281 15532..15801 -
1622924263.204191-CDS-S-dermatodea_contig1281:17396..174831622924263.204191-CDS-S-dermatodea_contig1281:17396..17483Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1281 17397..17483 -
1694079134.4956424-CDS-S-dermatodea_contig1281:17396..174831694079134.4956424-CDS-S-dermatodea_contig1281:17396..17483Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1281 17397..17483 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924263.217555-UTR-S-dermatodea_contig1281:17483..174921622924263.217555-UTR-S-dermatodea_contig1281:17483..17492Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1281 17484..17492 -
1694079134.505446-UTR-S-dermatodea_contig1281:17483..174921694079134.505446-UTR-S-dermatodea_contig1281:17483..17492Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1281 17484..17492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1281.1720.1

>prot_S-dermatodea_contig1281.1720.1 ID=prot_S-dermatodea_contig1281.1720.1|Name=mRNA_S-dermatodea_contig1281.1720.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=119bp
MMAELSYVVDDDVAEDARGWEPSFFDDSPGNSPRFDASEPYEISENILSS
APPSSGVTTPAAAGAAGIYALPHVKEIAGIRSSSGEPFGESGGKAPLSTA
AVVSSVSASSIRRKSHGGL
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mRNA from alignment at S-dermatodea_contig1281:15532..17492-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1281.1720.1 ID=mRNA_S-dermatodea_contig1281.1720.1|Name=mRNA_S-dermatodea_contig1281.1720.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1961bp|location=Sequence derived from alignment at S-dermatodea_contig1281:15532..17492- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGTAGGATGATGGCGGAGCTGTCTTACGTGGTAGATGATGACGTCGC
CGAGGACGCGAGGGGATGGGAGCCGAGTTTTTTTGATGACTCTCCGGTGG
GTGTGCGTTTTTTTTTTCTTTTTTTCTCTGTCTCGCTCTTTTGCTCTTCC
GGTTTTGTCTCTCTCTCTCTTACTCTATATACTACCAGGTATGTACCATT
GTCCACACAGTGGAAAGCAGGTTTGAAGGCTTCGTGCAGAGTCGTTTTGC
ATCCGGGGACTCGAACCGCTGTCCACGCAACAAGGTTGACTATAGTAGTG
TATACTTGAAAGCTTCATGCAGTACAAACAGGATCGTTTGGCATCCGGGG
AAGCAAACCACTGCTGTCCACACAAGGTTAACCATGTTTGAAGGCTTCAT
TCATGCAGCAGTATCGTTGGTCATCCAGGGACTCATCCGTCTGGCCTCCC
TCACCCGGTCGGGAGTTTGAACAAAGTTGGTGGAATCTTTATCCAATATA
GTCTACTCTCCATGCTGTTGCCCATACACTCATCTATATGTTTTCGTCTC
TATATTATATCCTACTCCGAGTATATATAATCGGCTTCACACTAGAACCT
CTATTCTCTGGACCCCACACTGTGGATCATACACTCAGATCACTTGTAAA
ATACCAGAATGTAATGCTATTGTACGGGTATTGTGTTATATGCGGAGACT
TTGTTAATCCTATTGGCGACGTTTTTTGTTTTTGTTGCTGTTGTGCTTCT
TTTCTCGTTTTTTGTTTTGTTTTTGACGCGTCGAATTCTGCTATTAATAT
CAATACGATTTGACATTGCTCAGGACCGTCGTAGTTAACAGGGCCTGTTC
GTCATAATCCTGTTAAGGAAGTTGTTTTGCAAAAGAGTAGGTGGGCAGCG
TGTGTATGTTGTTGAGCCATGCCTCAATACTTTCGGATCTTAAAATTTAT
GCACCAAAAAGTAGAAGATTGTTCTTAGATTTTTCTCTCCGTGTCTTTTT
TTTCTCTCTCGTTTTTTTTTGTGTAATGCTGATATTTATGTATGCCTTGC
GTATATATATATATTTTTTTTTTTCCGCGTGGTTTTTGTAACGTCTGTGT
GTGTTTTTGACCGTGTTGTAGACAGTTTTTTTAATGTTCATGTTTTATTT
GCATACTTTAAAGCATACTTTAAAGCATATGTTTGTTCACCTTTTTTCTG
TGGGGCCTAGAGCTATTGTACGGCATCTATTTACGTACATCTGTAGATAT
TGTAACCCCCCCCCCAAAAAAAAAACTAGTAAATATTTCAGAAACGTAGA
GCGAGCGTTGGGGTCCCACCTTTTCAAGAGGGAAGATGGTCTAAGCTACA
CCTATGGAGGCTCACTCACTTGTTACACATGACGCTGTGGTGTCTTATCA
TGTACGAAGTATGATGTTATGTGGTTATGGTATTAAATACAGGACGTGAG
TCTTTGTCCTGAGGTACACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGG
TAAAACCGCCCCCAGCCCGGCCCCGGCCACGCCGACATGCACAACAAATA
AGTGGCAAATACCCNNNNNNNNNNGGGTTTTTGTGGTTTTTTATACTTTA
TGAGGTTTTTTGTTTGTGGGTTTGGGGATTTAAATAAGGACGTTATGTTT
TTTGCTGAGGTCCACCCCCCCCCCCCCCCGTCTGTTGACAGGGCAACTCG
CCGCGGTTCGACGCGAGCGAACCGTACGAAATTTCAGAGAACATTCTTAG
CTCCGCTCCGCCATCCTCCGGGGTTACGACGCCGGCCGCTGCAGGGGCCG
CCGGAATTTACGCTTTGCCCCACGTCAAGGAGATCGCTGGCATCCGTTCC
TCTTCGGGAGAGCCGTTCGGGGAATCTGGCGGCAAAGCACCGTTGTCGAC
AGCGGCTGTTGTATCGTCTGTGTCGGCGTCCTCTATAAGAAGGAAGAGCC
ACGGTGGCTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1281:15532..17492-

>mRNA_S-dermatodea_contig1281.1720.1 ID=mRNA_S-dermatodea_contig1281.1720.1|Name=mRNA_S-dermatodea_contig1281.1720.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at S-dermatodea_contig1281:15532..17492- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGCGGAGCTGTCTTACGTGGTAGATGATGACGTCGCCGAGGACGC
GAGGGGATGGGAGCCGAGTTTTTTTGATGACTCTCCGATGATGGCGGAGC
TGTCTTACGTGGTAGATGATGACGTCGCCGAGGACGCGAGGGGATGGGAG
CCGAGTTTTTTTGATGACTCTCCGGGCAACTCGCCGCGGTTCGACGCGAG
CGAACCGTACGAAATTTCAGAGAACATTCTTAGCTCCGCTCCGCCATCCT
CCGGGGTTACGACGCCGGCCGCTGCAGGGGCCGCCGGAATTTACGCTTTG
CCCCACGTCAAGGAGATCGCTGGCATCCGTTCCTCTTCGGGAGAGCCGTT
CGGGGAATCTGGCGGCAAAGCACCGTTGTCGACAGCGGCTGTTGTATCGT
CTGTGTCGGCGTCCTCTATAAGAAGGAAGAGCCACGGTGGCTTGGGCAAC
TCGCCGCGGTTCGACGCGAGCGAACCGTACGAAATTTCAGAGAACATTCT
TAGCTCCGCTCCGCCATCCTCCGGGGTTACGACGCCGGCCGCTGCAGGGG
CCGCCGGAATTTACGCTTTGCCCCACGTCAAGGAGATCGCTGGCATCCGT
TCCTCTTCGGGAGAGCCGTTCGGGGAATCTGGCGGCAAAGCACCGTTGTC
GACAGCGGCTGTTGTATCGTCTGTGTCGGCGTCCTCTATAAGAAGGAAGA
GCCACGGTGGCTTG
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