mRNA_S-dermatodea_contig1274.1677.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1274.1677.1
Unique NamemRNA_S-dermatodea_contig1274.1677.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1274.1677.1 vs. uniprot
Match: A0A6H5JSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF5_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.350e-23
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 FGCDTLDDGVNYLRADYSKTCTNDTHRAYMIYAGVMVFVYPIGIPATFACWLMRNRADLGKPERDEMDHLEAFKSVWGAYRPS 249
            F CDTLDDGV+YLRADYS TC    + A+  YA VMV VYPIGIPATFA  L  NR DL K +RD + +L+    +W AY+PS
Sbjct:  831 FVCDTLDDGVSYLRADYSLTCDTPRYGAFRGYAAVMVCVYPIGIPATFAWLLGSNRQDLQKADRDRLANLQPLGDLWEAYKPS 913          
BLAST of mRNA_S-dermatodea_contig1274.1677.1 vs. uniprot
Match: D7G021_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G021_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 5.430e-23
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 FGCDTLDDGVNYLRADYSKTCTNDTHRAYMIYAGVMVFVYPIGIPATFACWLMRNRADLGKPERDEMDHLEAFKSVWGAYR 243
            F C+TL+DGV+YLRADY   C +  H A+ +YAGVMV VYP+GIPA F  WL RNR DL  P R E   LE  K++W +Y+
Sbjct:  106 FSCETLEDGVSYLRADYGFVCFSRRHVAFRVYAGVMVLVYPLGIPALFGWWLRRNRHDLRSPSRAENADLEPAKALWESYK 186          
BLAST of mRNA_S-dermatodea_contig1274.1677.1 vs. uniprot
Match: D7FPF7_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF7_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.810e-22
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 FGCDTLDDGVNYLRADYSKTCTNDTHRAYMIYAGVMVFVYPIGIPATFACWLMRNRADLGKPERD--------EMDHLEAFKSVWGAYRP 246
            F C+TLDDGV YLRADYS  C+ DTH A  +YAG+M+FVYP GIPA F  WL+ NR DL K + +         + +L+  + +W  Y+P
Sbjct:  183 FVCETLDDGVEYLRADYSLVCSTDTHTAMKVYAGLMIFVYPFGIPAFFTLWLVSNRHDLVKVDANGGSTATAKSLGNLQPMRDLWAPYKP 272          
BLAST of mRNA_S-dermatodea_contig1274.1677.1 vs. uniprot
Match: A0A6H5L0E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E1_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.470e-22
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 FGCDTLDDGVNYLRADYSKTCTNDTHRAYMIYAGVMVFVYPIGIPATFACWLMRNRADLGKPERDEMDHLEAFKSVWGAYRPS 249
            F CD LDDG++YLRADYS TC  +TH AY +YAG+M+ VYP+GIP  F  WL ++R +L +  R+    L+    +W  Y+PS
Sbjct:   39 FVCDPLDDGISYLRADYSLTCETETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELKQEGRERRAALKPAADLWEPYKPS 121          
BLAST of mRNA_S-dermatodea_contig1274.1677.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 6.460e-22
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 FGCDTLDDGVNYLRADYSKTCTNDTHRAYMIYAGVMVFVYPIGIPATFACWLMRNRADLGKPERD--------EMDHLEAFKSVWGAYRP 246
            F C+TLDDGV YLRADYS TC+   H A M YAG+M+ VYP+GIP  ++ WL+ NR DL K             +DHL+  + +W +Y+P
Sbjct:  859 FVCETLDDGVTYLRADYSLTCSTGVHTAMMAYAGLMILVYPVGIPTVYSWWLLSNRHDLVKVGTSGNCLGGAPRLDHLQPMRDLWSSYKP 948          
BLAST of mRNA_S-dermatodea_contig1274.1677.1 vs. uniprot
Match: D7FTU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU5_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 7.880e-21
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 FGCDTLDDGVNYLRADYSKTCTNDTHRAYMIYAGVMVFVYPIGIPATFACWLMRNRADLGKPERDEMDHLEAFKSVWGAYRPS 249
            F CD LDDG +YLR+DYS TC  +TH AY +YAG+M+ VYP+GIP  F  WL ++R +L +  R+    L+    +W  Y+PS
Sbjct:  833 FVCDPLDDGNSYLRSDYSLTCDTETHTAYRVYAGLMILVYPVGIPCVFGWWLFKHRHELKQEGRERRAVLKPAADLWEPYKPS 915          
BLAST of mRNA_S-dermatodea_contig1274.1677.1 vs. uniprot
Match: D7G8S0_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S0_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.220e-20
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 FGCDTLDDGVNYLRADYSKTCTNDTHRAYMIYAGVMVFVYPIGIPATFACWLMRNR---ADLGKPER-----DEMDHLEAFKSVWGAYRP 246
            F C+ LD G++YLRADYS TC    H+A M+YAG+M+FVYP+GIPA +A WL+  R     +G P        E+DHL+  + +W  Y+P
Sbjct:  148 FVCERLDTGMDYLRADYSLTCYTGVHKAMMVYAGLMIFVYPVGIPAFYAWWLLFIRHYLVKVGAPNNFLERVPELDHLQPMRDLWAPYKP 237          
BLAST of mRNA_S-dermatodea_contig1274.1677.1 vs. uniprot
Match: D7FUB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB5_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.030e-20
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    1 FGCDTLDDGVNYLRADYSKTCTNDTHRAYMIYAGVMVFVYPIGIPATFACWLMRNRADLGKPERDEM---DHLEAFKSVWGAYRP 246
            F C+TLDD V YLRADYS TC+  TH    +YAG+MV VYPIGIPA FA WL  NR DL +         ++L   K +W  Y+P
Sbjct:  141 FMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVRERSSGTATPENLRPMKDLWEPYKP 225          
BLAST of mRNA_S-dermatodea_contig1274.1677.1 vs. uniprot
Match: A0A6H5KHA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHA3_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 6.790e-20
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    1 FGCDTLDDGVNYLRADYSKTCTNDTHRAYMIYAGVMVFVYPIGIPATFACWLMRNRADLGKPERDEM---DHLEAFKSVWGAYRP 246
            F C+TLDD V YLRADYS TC+  TH    +YAG+MV VYPIGIPA FA WL  NR DL +         ++L   K +W  Y+P
Sbjct:  163 FMCETLDDEVEYLRADYSLTCSTSTHTIMEVYAGLMVLVYPIGIPAVFAWWLASNRKDLVQDRSGGTTTPENLRPMKDLWEPYKP 247          
BLAST of mRNA_S-dermatodea_contig1274.1677.1 vs. uniprot
Match: D7FM10_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM10_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 4.760e-17
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    1 FGCDTLDDGVNYLRADYSKTCTNDTHRAYMIYAGVMVFVYPIGIPATFACWLMRNRADLGKPERDEMDHLEAFKSVWGAYRP 246
            F CD+LDDG NYLRADY   CT   H A  +YAGVMV VYP+GIP  +A  L ++R  L     D+    +   S+W AY+P
Sbjct:  819 FACDSLDDGNNYLRADYRILCTTSKHLALQVYAGVMVVVYPVGIPLLYAILLFQHRDILANASADKAG-AQPIASLWEAYKP 899          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1274.1677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSF5_9PHAE5.350e-2359.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G021_ECTSI5.430e-2355.56Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
D7FPF7_ECTSI2.810e-2248.89Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5L0E1_9PHAE3.470e-2249.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI3_9PHAE6.460e-2247.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTU5_ECTSI7.880e-2148.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8S0_ECTSI1.220e-2046.67Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
D7FUB5_ECTSI3.030e-2051.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHA3_9PHAE6.790e-2051.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM10_ECTSI4.760e-1748.78Probable extracellular nuclease n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1274contigS-dermatodea_contig1274:17996..18245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue3.8e-19
Seed eggNOG ortholog2880.D7G021
EggNOG OGs2D43J@1,2STRI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size251
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924259.9354277-CDS-S-dermatodea_contig1274:17995..182441622924259.9354277-CDS-S-dermatodea_contig1274:17995..18244Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1274 17996..18244 +
1694079132.0980191-CDS-S-dermatodea_contig1274:17995..182441694079132.0980191-CDS-S-dermatodea_contig1274:17995..18244Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1274 17996..18244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1274.1677.1prot_S-dermatodea_contig1274.1677.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1274 17996..18244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1274.1677.1

>prot_S-dermatodea_contig1274.1677.1 ID=prot_S-dermatodea_contig1274.1677.1|Name=mRNA_S-dermatodea_contig1274.1677.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
FGCDTLDDGVNYLRADYSKTCTNDTHRAYMIYAGVMVFVYPIGIPATFAC
WLMRNRADLGKPERDEMDHLEAFKSVWGAYRPS
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mRNA from alignment at S-dermatodea_contig1274:17996..18245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1274.1677.1 ID=mRNA_S-dermatodea_contig1274.1677.1|Name=mRNA_S-dermatodea_contig1274.1677.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=250bp|location=Sequence derived from alignment at S-dermatodea_contig1274:17996..18245+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTGGTTGCGACACGCTTGACGACGGTGTGAATTACCTTCGTGCCGATTA CAGCAAGACCTGCACCAATGATACTCACCGTGCGTACATGATATACGCGG GTGTCATGGTGTTCGTTTACCCGATCGGTATACCCGCCACGTTTGCTTGT TGGCTCATGCGAAATCGTGCGGATCTCGGGAAGCCTGAAAGGGATGAAAT GGACCATCTCGAGGCGTTCAAGAGTGTTTGGGGCGCCTACCGACCGTCTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1274:17996..18245+

>mRNA_S-dermatodea_contig1274.1677.1 ID=mRNA_S-dermatodea_contig1274.1677.1|Name=mRNA_S-dermatodea_contig1274.1677.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig1274:17996..18245+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTGGTTGCGACACGCTTGACGACGGTGTGAATTACCTTCGTGCCGATTA
CAGCAAGACCTGCACCAATGATACTCACCGTGCGTACATGATATACGCGG
GTGTCATGGTGTTCGTTTACCCGATCGGTATACCCGCCACGTTTGCTTGT
TGGCTCATGCGAAATCGTGCGGATCTCGGGAAGCCTGAAAGGGATGAAAT
GGACCATCTCGAGGCGTTCAAGAGTGTTTGGGGCGCCTACCGACCGTCTT
TTGGTTGCGACACGCTTGACGACGGTGTGAATTACCTTCGTGCCGATTAC
AGCAAGACCTGCACCAATGATACTCACCGTGCGTACATGATATACGCGGG
TGTCATGGTGTTCGTTTACCCGATCGGTATACCCGCCACGTTTGCTTGTT
GGCTCATGCGAAATCGTGCGGATCTCGGGAAGCCTGAAAGGGATGAAATG
GACCATCTCGAGGCGTTCAAGAGTGTTTGGGGCGCCTACCGACCGTCT
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