mRNA_S-dermatodea_contig12732.1674.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12732.1674.1
Unique NamemRNA_S-dermatodea_contig12732.1674.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12732.1674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12732contigS-dermatodea_contig12732:2..460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12732.1674.1prot_S-dermatodea_contig12732.1674.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12732 74..421 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924259.7707975-UTR-S-dermatodea_contig12732:1..731622924259.7707975-UTR-S-dermatodea_contig12732:1..73Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12732 2..73 +
1694079131.9742498-UTR-S-dermatodea_contig12732:1..731694079131.9742498-UTR-S-dermatodea_contig12732:1..73Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12732 2..73 +
1622924259.7880087-UTR-S-dermatodea_contig12732:421..4601622924259.7880087-UTR-S-dermatodea_contig12732:421..460Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12732 422..460 +
1694079132.0059915-UTR-S-dermatodea_contig12732:421..4601694079132.0059915-UTR-S-dermatodea_contig12732:421..460Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12732 422..460 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924259.779576-CDS-S-dermatodea_contig12732:73..4211622924259.779576-CDS-S-dermatodea_contig12732:73..421Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12732 74..421 +
1694079131.9926684-CDS-S-dermatodea_contig12732:73..4211694079131.9926684-CDS-S-dermatodea_contig12732:73..421Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12732 74..421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12732.1674.1

>prot_S-dermatodea_contig12732.1674.1 ID=prot_S-dermatodea_contig12732.1674.1|Name=mRNA_S-dermatodea_contig12732.1674.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
MGCNNFIFVRIARAHQRHPGDYRTYMGACGAILFVETWPEITWGVGLQRG
QLHSICVQQMYPDPAFSARPSWGFWIGGCPGASWCDTSKHTVLRRQDARL
AHDTTCLNYLQVLFG*
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mRNA from alignment at S-dermatodea_contig12732:2..460+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12732.1674.1 ID=mRNA_S-dermatodea_contig12732.1674.1|Name=mRNA_S-dermatodea_contig12732.1674.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=459bp|location=Sequence derived from alignment at S-dermatodea_contig12732:2..460+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCGTTCGGAGAGTCGCATGAAGGGTGAGCTGCACCCTGCTAAGAGTGTT
CGGCCTAGACCGAACTAATTTTATGGGTTGCAACAACTTCATATTCGTAC
GCATCGCTCGGGCTCATCAGAGACACCCCGGAGATTACAGGACGTACATG
GGCGCGTGCGGTGCGATCCTTTTCGTTGAAACCTGGCCCGAGATAACGTG
GGGTGTAGGTCTACAGCGGGGGCAACTTCACTCGATATGCGTCCAGCAGA
TGTATCCAGATCCTGCCTTTTCGGCTCGTCCTTCTTGGGGTTTTTGGATC
GGAGGTTGTCCTGGGGCCTCTTGGTGCGATACTTCGAAGCATACCGTGCT
CCGGCGTCAGGACGCCCGCCTCGCGCACGACACGACATGCCTCAACTACC
TCCAAGTTTTGTTCGGCTAGGTGGGGGAGGGCGAGAAGAGTGTCGAGCTT
CACGGTCGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12732:2..460+

>mRNA_S-dermatodea_contig12732.1674.1 ID=mRNA_S-dermatodea_contig12732.1674.1|Name=mRNA_S-dermatodea_contig12732.1674.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig12732:2..460+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGTTGCAACAACTTCATATTCGTACGCATCGCTCGGGCTCATCAGAG
ACACCCCGGAGATTACAGGACGTACATGGGCGCGTGCGGTGCGATCCTTT
TCGTTGAAACCTGGCCCGAGATAACGTGGGGTGTAGGTCTACAGCGGGGG
CAACTTCACTCGATATGCGTCCAGCAGATGTATCCAGATCCTGCCTTTTC
GGCTCGTCCTTCTTGGGGTTTTTGGATCGGAGGTTGTCCTGGGGCCTCTT
GGTGCGATACTTCGAAGCATACCGTGCTCCGGCGTCAGGACGCCCGCCTC
GCGCACGACACGACATGCCTCAACTACCTCCAAGTTTTGTTCGGCTAGAT
GGGTTGCAACAACTTCATATTCGTACGCATCGCTCGGGCTCATCAGAGAC
ACCCCGGAGATTACAGGACGTACATGGGCGCGTGCGGTGCGATCCTTTTC
GTTGAAACCTGGCCCGAGATAACGTGGGGTGTAGGTCTACAGCGGGGGCA
ACTTCACTCGATATGCGTCCAGCAGATGTATCCAGATCCTGCCTTTTCGG
CTCGTCCTTCTTGGGGTTTTTGGATCGGAGGTTGTCCTGGGGCCTCTTGG
TGCGATACTTCGAAGCATACCGTGCTCCGGCGTCAGGACGCCCGCCTCGC
GCACGACACGACATGCCTCAACTACCTCCAAGTTTTGTTCGGCTAG
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