mRNA_S-dermatodea_contig1273.1672.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1273.1672.1
Unique NamemRNA_S-dermatodea_contig1273.1672.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1273.1672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1273contigS-dermatodea_contig1273:16715..17168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size455
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924259.4852183-CDS-S-dermatodea_contig1273:16714..171671622924259.4852183-CDS-S-dermatodea_contig1273:16714..17167Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1273 16715..17167 +
1694079131.7807195-CDS-S-dermatodea_contig1273:16714..171671694079131.7807195-CDS-S-dermatodea_contig1273:16714..17167Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1273 16715..17167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1273.1672.1prot_S-dermatodea_contig1273.1672.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1273 16715..17167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1273.1672.1

>prot_S-dermatodea_contig1273.1672.1 ID=prot_S-dermatodea_contig1273.1672.1|Name=mRNA_S-dermatodea_contig1273.1672.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=151bp
SLSSSQTQPSTREPSPPPLSTQEGSSSADGENDKEEVDEFVTVHGDKGER
ARNDYSSAVERPRKTSGGAGNEPDTDGKGRDNAAIAMLAPADPTFASDLS
CFALRPPGRAVDGKAISAREGSAKQAAEAKRKQLGGDGQGVQLSIGGGSE
G
back to top

mRNA from alignment at S-dermatodea_contig1273:16715..17168+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1273.1672.1 ID=mRNA_S-dermatodea_contig1273.1672.1|Name=mRNA_S-dermatodea_contig1273.1672.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=454bp|location=Sequence derived from alignment at S-dermatodea_contig1273:16715..17168+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTTTGTCCTCCTCCCAGACACAGCCGTCGACGAGAGAGCCGTCTCCTCC
CCCGCTTTCAACCCAGGAAGGTTCCTCGTCAGCGGATGGGGAAAATGACA
AAGAGGAAGTCGACGAGTTCGTCACGGTCCACGGTGACAAGGGCGAGAGG
GCGCGAAACGACTACTCCTCGGCCGTCGAACGGCCGAGAAAAACGTCCGG
CGGGGCGGGAAATGAGCCCGATACTGATGGTAAAGGGAGAGATAACGCCG
CGATAGCGATGCTCGCCCCTGCGGATCCGACTTTCGCCTCGGACTTGTCG
TGTTTCGCACTTCGACCGCCAGGAAGAGCGGTAGACGGAAAAGCTATTTC
GGCGAGAGAGGGCTCCGCGAAGCAGGCAGCCGAAGCAAAACGGAAGCAAC
TTGGCGGAGATGGCCAAGGCGTGCAGCTATCGATCGGGGGTGGAAGTGAA
GGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1273:16715..17168+

>mRNA_S-dermatodea_contig1273.1672.1 ID=mRNA_S-dermatodea_contig1273.1672.1|Name=mRNA_S-dermatodea_contig1273.1672.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at S-dermatodea_contig1273:16715..17168+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCTTTGTCCTCCTCCCAGACACAGCCGTCGACGAGAGAGCCGTCTCCTCC
CCCGCTTTCAACCCAGGAAGGTTCCTCGTCAGCGGATGGGGAAAATGACA
AAGAGGAAGTCGACGAGTTCGTCACGGTCCACGGTGACAAGGGCGAGAGG
GCGCGAAACGACTACTCCTCGGCCGTCGAACGGCCGAGAAAAACGTCCGG
CGGGGCGGGAAATGAGCCCGATACTGATGGTAAAGGGAGAGATAACGCCG
CGATAGCGATGCTCGCCCCTGCGGATCCGACTTTCGCCTCGGACTTGTCG
TGTTTCGCACTTCGACCGCCAGGAAGAGCGGTAGACGGAAAAGCTATTTC
GGCGAGAGAGGGCTCCGCGAAGCAGGCAGCCGAAGCAAAACGGAAGCAAC
TTGGCGGAGATGGCCAAGGCGTGCAGCTATCGATCGGGGGTGGAAGTGAA
GGGTCTTTGTCCTCCTCCCAGACACAGCCGTCGACGAGAGAGCCGTCTCC
TCCCCCGCTTTCAACCCAGGAAGGTTCCTCGTCAGCGGATGGGGAAAATG
ACAAAGAGGAAGTCGACGAGTTCGTCACGGTCCACGGTGACAAGGGCGAG
AGGGCGCGAAACGACTACTCCTCGGCCGTCGAACGGCCGAGAAAAACGTC
CGGCGGGGCGGGAAATGAGCCCGATACTGATGGTAAAGGGAGAGATAACG
CCGCGATAGCGATGCTCGCCCCTGCGGATCCGACTTTCGCCTCGGACTTG
TCGTGTTTCGCACTTCGACCGCCAGGAAGAGCGGTAGACGGAAAAGCTAT
TTCGGCGAGAGAGGGCTCCGCGAAGCAGGCAGCCGAAGCAAAACGGAAGC
AACTTGGCGGAGATGGCCAAGGCGTGCAGCTATCGATCGGGGGTGGAAGT
GAAGGG
back to top